HG10019888 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019888
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 26547292 .. 26548845 (+)
RNA-Seq Expression	HG10019888
Synteny	HG10019888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTGGTGGTAGAAAAATTGTTGGAAATAGGGGAGAGACAGGCAATGATGGAGACGAAAATGGAGGAACAGCTCAGGGAGGCCAAGGCGGCTAGGGACAAGAAAAATGGTCAGATGAGTTTGATTCTTTCACGATTGGATGCGATGGGAGGAACGGGCTCAACGTCACCGGAAAGAGCAATGACCGATAAAGGAAAAGGAGACATGGGTGCGGAAGTAACGGAGTCAAAGAAGAGTGATCACCAACAGGAGGAGGAAGGCATTCACACACTTGGGAGTAAAGAAGTTCCTCTGTTTGATATGAGATTGAGGAAGTTGGAGGTGAAGCTTCGGAGAAGGAGCCGACGATTGCTGGAATGGTCGAAGAAAATGACCTGGTGGAGATGGGGAACAAATAGTTAATGTAGTCTATCGCTGGCGACAATCGCAGAGATAAATCGAGAAAAATATTTGGGGAAGGTGTTGCAAGTTTCATAAAAAAATTAGGGGACAAATGGCTGCCGGAGACCATCACCAGCCAAGAGTGCACTGGCGGATAGAGATGCAGACTTGGGGAAGACACTGCTGGAAATTTCGTGGGGATGAGGGGGAGAGATTCCTAATCCACGTGAAGTGTCAGGATGTAGGGCCATGGTCATGGAAAAAATGCAGCTTAATTCTGGATGGACTTTTTAGGCTAAGTTTACATAAAAGGGTGAAGGCCCATTTCTTTCTGGAGCTAAATAATGAAGCAGCAAGTTGTTGGGTCATGGCCTGGGCTGCCTCATTCTGTTTGGTTCCCAACAGCGATAGCCCACCACCTAAGCTACTGCCACCGCCGATCTCCGTTTGCAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGGTATCCACACCTTGAGGACAGGGTGTGTTTTAGGGGGCTGGTAATGATAGGAATCGTATTAGAGGGATAGTATTAGTAATTAGTTAAGTAGTTTGTTATGGAAGTTGGTTATAAATAGAGGGATAGGGAAATGGAGAAGAGAAGCAATATTTAGGAATATGAATTAGGGCTTGAGAGTGATCTCAAGATTGGGAGGGTCCAAATACCTCGAACACTTAGTTTATCTTGTAATTTTCGTTCTCGTTTATCTTTTAATATATTTGGGTTCTATCATTATCCTGTCATTAAGCGGATTCAAAAGATCAACAGGTTTAAGTTTCCACTATTATTTGTAAGTTTTCTAAGTAATCAAATATCTTACATCAAACTTATGAATAACGCCAAAATCAAATGTGCCCACATAATTATGCACTTCAAACAAGTTCATTCAGTCTGATTTTTCTCCTTTACGTTTCTTGCTACTTCCCAAAAAAAAGTGGATGATCTTACCTGCAACTGATTGCGAACTAGTTCCAGCTTTGATTCCTGTAATTTTCCAAAGAGAAATCAACTTCATAATGAAAGTATCTCAACAATATAGAGAAGACTTGCAATCGGGTTAAATTATTGGAGGAAATAAAAAAAGATGAAGGAAAGTTACTTGGTCCTGAAGCGCTTCTACAAGCAAGGAAACCAAAGAAGCCCTAG

mRNA sequence

ATGATAGTGGTGGTAGAAAAATTGTTGGAAATAGGGGAGAGACAGGCAATGATGGAGACGAAAATGGAGGAACAGCTCAGGGAGGCCAAGGCGGCTAGGGACAAGAAAAATGGTCAGATGAGTTTGATTCTTTCACGATTGGATGCGATGGGAGGAACGGGCTCAACGTCACCGGAAAGAGCAATGACCGATAAAGGAAAAGGAGACATGGGTGCGGAAGTAACGGAGTCAAAGAAGAGTGATCACCAACAGGAGGAGGAAGGCATTCACACACTTGGGAAGAAGACTTGCAATCGGGTTAAATTATTGGAGGAAATAAAAAAAGATGAAGGAAAGTTACTTGGTCCTGAAGCGCTTCTACAAGCAAGGAAACCAAAGAAGCCCTAG

Coding sequence (CDS)

ATGATAGTGGTGGTAGAAAAATTGTTGGAAATAGGGGAGAGACAGGCAATGATGGAGACGAAAATGGAGGAACAGCTCAGGGAGGCCAAGGCGGCTAGGGACAAGAAAAATGGTCAGATGAGTTTGATTCTTTCACGATTGGATGCGATGGGAGGAACGGGCTCAACGTCACCGGAAAGAGCAATGACCGATAAAGGAAAAGGAGACATGGGTGCGGAAGTAACGGAGTCAAAGAAGAGTGATCACCAACAGGAGGAGGAAGGCATTCACACACTTGGGAAGAAGACTTGCAATCGGGTTAAATTATTGGAGGAAATAAAAAAAGATGAAGGAAAGTTACTTGGTCCTGAAGCGCTTCTACAAGCAAGGAAACCAAAGAAGCCCTAG

Protein sequence

MIVVVEKLLEIGERQAMMETKMEEQLREAKAARDKKNGQMSLILSRLDAMGGTGSTSPERAMTDKGKGDMGAEVTESKKSDHQQEEEGIHTLGKKTCNRVKLLEEIKKDEGKLLGPEALLQARKPKKP

Homology

The following BLAST results are available for this feature:

BLAST of HG10019888 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019888 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019888 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019888 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019888.1	HG10019888.1	mRNA