HG10019842 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019842
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Sigma factor binding protein 2
Location	Chr04: 26036641 .. 26037060 (+)
RNA-Seq Expression	HG10019842
Synteny	HG10019842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGAGTTTAGTGGTAAGTGAGCTGACGGCGACGATGAAGAAGAAGAAAACAACGACGCGAAAAAGGAAATCACGCGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCTAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTGACCGGGAGAGATGCAGAGTTTCCCGACCCGGCTAAATTCTATCCCGCCTCATGCGAGATCATGAATGATCTCGAGAAGAAAGTAGTAGCAGAAGAAGAAGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGTTCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTATGATCAATCCTTTGGTTTAG

mRNA sequence

ATGGATCAGAGTTTAGTGGTAAGTGAGCTGACGGCGACGATGAAGAAGAAGAAAACAACGACGCGAAAAAGGAAATCACGCGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCTAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTGACCGGGAGAGATGCAGAGTTTCCCGACCCGGCTAAATTCTATCCCGCCTCATGCGAGATCATGAATGATCTCGAGAAGAAAGTAGTAGCAGAAGAAGAAGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGTTCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTATGATCAATCCTTTGGTTTAG

Coding sequence (CDS)

ATGGATCAGAGTTTAGTGGTAAGTGAGCTGACGGCGACGATGAAGAAGAAGAAAACAACGACGCGAAAAAGGAAATCACGCGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCTAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTGACCGGGAGAGATGCAGAGTTTCCCGACCCGGCTAAATTCTATCCCGCCTCATGCGAGATCATGAATGATCTCGAGAAGAAAGTAGTAGCAGAAGAAGAAGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGTTCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTATGATCAATCCTTTGGTTTAG

Protein sequence

MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLLLDSSCDDDFFSSYESLEDILRRDMMENLGAISTSMINPLV

Homology

[Close]

BLAST of HG10019842 vs. NCBI nr
Match: XP_008443611.1 (PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sigma factor binding protein 2 [Cucumis melo var. makuwa] >TYK25522.1 sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 118/142 (83.10%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD++L+VSELT T  KKK TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESLED 120
           GRDAEFPDP+KFYPASCEI MNDLEKKVVA++ E+DEQ LL+DSSCDDDF+ SS+ESLED
Sbjct: 61  GRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLED 120

Query: 121 ILRRDMMENLGAISTSMINPLV 140
           ILRRD+MEN GAISTS+INPLV
Sbjct: 121 ILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of HG10019842 vs. NCBI nr
Match: XP_011652185.1 (uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 120/144 (83.33%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD+SL+VSELT TMKK   TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESL 120
           GRDAEFPDP KFYPA SCEIMN  D+EKKVVA E EEDEQ LL+DSSCDDDF  SSYESL
Sbjct: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120

Query: 121 EDILRRDMMENLGAISTSMINPLV 140
           EDILRRD+MEN GAISTS+ NPLV
Sbjct: 121 EDILRRDVMENFGAISTSLFNPLV 144

[Close]

BLAST of HG10019842 vs. NCBI nr
Match: KAE8651179.1 (hypothetical protein Csa_002123, partial [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 6.9e-34
Identity = 86/101 (85.15%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 43  MRVHTSASEFRALVQELTGRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQVL 102
           MRVHTSASEFRALVQELTGRDAEFPDP KFYPA SCEIMN  D+EKKVVA E EEDEQ L
Sbjct: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60

Query: 103 LLDSSCDDDFF-SSYESLEDILRRDMMENLGAISTSMINPL 139
           L+DSSCDDDF  SSYESLEDILRRD+MEN GAISTS+ NPL
Sbjct: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 101

[Close]

BLAST of HG10019842 vs. NCBI nr
Match: XP_022147780.1 (sigma factor binding protein 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-24
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD++L+VSE    M+  K  TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPASCEIMN-DLEKKVVAEEEED---EQVLLLDSSCDDDFFSSYESLE 120
           GRDAEFPDPAKF+ AS ++   +LEK    +++E+   +    ++ S DD   S YES E
Sbjct: 61  GRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTMEDSNDDFLESPYESFE 120

Query: 121 DILRRDM-MENLGAISTSM 135
           ++L R+M MEN    S S+
Sbjct: 121 EMLMREMLMENFAVPSRSV 135

[Close]

BLAST of HG10019842 vs. NCBI nr
Match: XP_023539403.1 (uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           M+ SLV  ++    K+++   RKRK  D K QPLKVVYISNPMRV  SA+EFR LVQ+LT
Sbjct: 1   MESSLVGRDVEEGRKERR---RKRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQQLT 60

Query: 61  GRDAEFPDPAKFYP-ASCEIMNDLEKKVVAEEEEDEQVLLL-------DSSCDDDFFSSY 120
           G+DA      KF P AS E      +K+  ++++D+Q LLL       + S DD    SY
Sbjct: 61  GQDA-----PKFPPSASVETPETNVRKIQDDDDDDDQQLLLHWAAAIMEDSSDDFLGGSY 120

Query: 121 ESLEDILRRDMMENLGA 130
           ESLE I  RDM++ L A
Sbjct: 121 ESLEGIFMRDMVDRLAA 129

[Close]

BLAST of HG10019842 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-08
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKK------QPLKVVYISNPMRVHTSASEFRA 60
           M+ S      T ++ KKK +   RKS  +KK      +P+KV YISNPMRV T AS+FR 
Sbjct: 1   MESSSSTFLTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRE 60

Query: 61  LVQELTGRDAEFPDPAKFYPASCEIMN------DLEKKVVAEEEEDEQVLLLDSSCDDDF 120
           LVQELTG+DA    P   Y  S +  N      +L  +V+ +E   E+    DS C    
Sbjct: 61  LVQELTGQDAVDLQPEPIYSPSSDDHNLSPPAENLAPRVLHQEPFGER----DSDC---- 120

Query: 121 FSSYESL--EDILRRDMM 125
              YE L  ED+   D M
Sbjct: 121 ---YEPLNAEDMFLPDQM 127

[Close]

BLAST of HG10019842 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.1e-05
Identity = 36/114 (31.58%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 1   MDQS---LVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQ 60
           MDQS   L++++  ++    +   ++++      +P+KV YISNPMRV T  S+FR LVQ
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQ 60

Query: 61  ELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLLLDSSCDDDFFSS 112
           ELTG+DA    P+     + ++    E ++  E  + E      S  D++ F++
Sbjct: 61  ELTGQDAADLPPSPTTFTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNA 114

[Close]

BLAST of HG10019842 vs. ExPASy TrEMBL
Match: A0A5D3DPQ4 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006730 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 118/142 (83.10%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD++L+VSELT T  KKK TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESLED 120
           GRDAEFPDP+KFYPASCEI MNDLEKKVVA++ E+DEQ LL+DSSCDDDF+ SS+ESLED
Sbjct: 61  GRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLED 120

Query: 121 ILRRDMMENLGAISTSMINPLV 140
           ILRRD+MEN GAISTS+INPLV
Sbjct: 121 ILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of HG10019842 vs. ExPASy TrEMBL
Match: A0A1S3B8H6 (uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 118/142 (83.10%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD++L+VSELT T  KKK TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPASCEI-MNDLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESLED 120
           GRDAEFPDP+KFYPASCEI MNDLEKKVVA++ E+DEQ LL+DSSCDDDF+ SS+ESLED
Sbjct: 61  GRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLED 120

Query: 121 ILRRDMMENLGAISTSMINPLV 140
           ILRRD+MEN GAISTS+INPLV
Sbjct: 121 ILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of HG10019842 vs. ExPASy TrEMBL
Match: A0A0A0LFH5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.3e-51
Identity = 120/144 (83.33%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD+SL+VSELT TMKK   TTRKRKS +E KQPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPA-SCEIMN--DLEKKVVAEE-EEDEQVLLLDSSCDDDFF-SSYESL 120
           GRDAEFPDP KFYPA SCEIMN  D+EKKVVA E EEDEQ LL+DSSCDDDF  SSYESL
Sbjct: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120

Query: 121 EDILRRDMMENLGAISTSMINPLV 140
           EDILRRD+MEN GAISTS+ NPLV
Sbjct: 121 EDILRRDVMENFGAISTSLFNPLV 144

[Close]

BLAST of HG10019842 vs. ExPASy TrEMBL
Match: A0A6J1D137 (sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016633 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           MD++L+VSE    M+  K  TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELT
Sbjct: 1   MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPAKFYPASCEIMN-DLEKKVVAEEEED---EQVLLLDSSCDDDFFSSYESLE 120
           GRDAEFPDPAKF+ AS ++   +LEK    +++E+   +    ++ S DD   S YES E
Sbjct: 61  GRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTMEDSNDDFLESPYESFE 120

Query: 121 DILRRDM-MENLGAISTSM 135
           ++L R+M MEN    S S+
Sbjct: 121 EMLMREMLMENFAVPSRSV 135

[Close]

BLAST of HG10019842 vs. ExPASy TrEMBL
Match: A0A6J1FKR4 (uncharacterized protein LOC111446639 OS=Cucurbita moschata OX=3662 GN=LOC111446639 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQELT 60
           M+ SLV  ++    K+++   R RK  D K QPLKVVYISNPMRV  SA+EFR LVQELT
Sbjct: 1   MESSLVGRDVEEGRKERR---RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELT 60

Query: 61  GRDA-EFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLL----LDSSCDDDFFSSYESL 120
           G+DA +FP  A    AS +      +K + ++++DEQ+LL    ++ S D     SYES 
Sbjct: 61  GQDAPKFPPSAS--SASVQTPETNVRK-IQDDDDDEQLLLHWAAMEDSSDGFLGGSYESS 120

Query: 121 EDILRRDMMENLGA 130
           E I  RDM++ L A
Sbjct: 121 EGIFMRDMVDKLAA 128

[Close]

BLAST of HG10019842 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MDQSLVVSELTATMKKKKTTTRKRKSRDEKK------QPLKVVYISNPMRVHTSASEFRA 60
           M+ S      T ++ KKK +   RKS  +KK      +P+KV YISNPMRV T AS+FR 
Sbjct: 1   MESSSSTFLTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRE 60

Query: 61  LVQELTGRDAEFPDPAKFYPASCEIMN------DLEKKVVAEEEEDEQVLLLDSSCDDDF 120
           LVQELTG+DA    P   Y  S +  N      +L  +V+ +E   E+    DS C    
Sbjct: 61  LVQELTGQDAVDLQPEPIYSPSSDDHNLSPPAENLAPRVLHQEPFGER----DSDC---- 120

Query: 121 FSSYESL--EDILRRDMM 125
              YE L  ED+   D M
Sbjct: 121 ---YEPLNAEDMFLPDQM 127

[Close]

BLAST of HG10019842 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-06
Identity = 36/114 (31.58%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 1   MDQS---LVVSELTATMKKKKTTTRKRKSRDEKKQPLKVVYISNPMRVHTSASEFRALVQ 60
           MDQS   L++++  ++    +   ++++      +P+KV YISNPMRV T  S+FR LVQ
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQ 60

Query: 61  ELTGRDAEFPDPAKFYPASCEIMNDLEKKVVAEEEEDEQVLLLDSSCDDDFFSS 112
           ELTG+DA    P+     + ++    E ++  E  + E      S  D++ F++
Sbjct: 61  ELTGQDAADLPPSPTTFTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNA 114

The following BLAST results are available for this feature:

BLAST of HG10019842 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443611.1	2.5e-52	83.10	PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sig...	[more]
XP_011652185.1	4.8e-51	83.33	uncharacterized protein LOC105434994 [Cucumis sativus]	[more]
KAE8651179.1	6.9e-34	85.15	hypothetical protein Csa_002123, partial [Cucumis sativus]	[more]
XP_022147780.1	2.9e-24	55.40	sigma factor binding protein 2, chloroplastic-like [Momordica charantia]	[more]
XP_023539403.1	2.5e-15	47.45	uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10019842 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	3.0e-08	39.13	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	4.1e-05	31.58	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of HG10019842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ4	1.2e-52	83.10	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B8H6	1.2e-52	83.10	uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=...	[more]
A0A0A0LFH5	2.3e-51	83.33	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=...	[more]
A0A6J1D137	1.4e-24	55.40	sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=367...	[more]
A0A6J1FKR4	1.1e-13	46.27	uncharacterized protein LOC111446639 OS=Cucurbita moschata OX=3662 GN=LOC1114466...	[more]

BLAST of HG10019842 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	2.2e-09	39.13	sigma factor binding protein 1	[more]
AT2G41180.1	2.9e-06	31.58	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..64 e-value: 6.7E-13 score: 47.9
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 15..131
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 15..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019842.1	HG10019842.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity