HG10019833 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019833
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	Chr04: 25923783 .. 25925000 (+)
RNA-Seq Expression	HG10019833
Synteny	HG10019833

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCCCAACAGTCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCAGCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCGCCCTCTACTGCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCATTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGACATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCCAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTCGATGATTATGCGGATTATCAGCGTCCTCGACGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCATTCTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAGGACGAGCAAATGCGTGCGTCGCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCACCAGATGCTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAGTGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGACGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

mRNA sequence

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCCCAACAGTCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCAGCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCGCCCTCTACTGCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCATTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGACATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCCAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTCGATGATTATGCGGATTATCAGCGTCCTCGACGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCATTCTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAGGACGAGCAAATGCGTGCGTCGCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCACCAGATGCTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAGTGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGACGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCCCAACAGTCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCAGCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCGCCCTCTACTGCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCATTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGACATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCCAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTCGATGATTATGCGGATTATCAGCGTCCTCGACGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCATTCTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAGGACGAGCAAATGCGTGCGTCGCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCACCAGATGCTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAGTGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGACGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

Protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Homology

[Close]

BLAST of HG10019833 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 731.1 bits (1886), Expect = 5.2e-207
Identity = 388/409 (94.87%), Postives = 396/409 (96.82%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSPST+LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVK KDDAENES CS  TTVASQL+LSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCS--TTVASQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEP    P DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMA+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD
Sbjct: 301 LSNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLRP+A PGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of HG10019833 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] >KAA0047287.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 722.2 bits (1863), Expect = 2.4e-204
Identity = 387/409 (94.62%), Postives = 393/409 (96.09%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVKT+  AENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of HG10019833 vs. NCBI nr
Match: XP_004142109.1 (mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN54188.1 hypothetical protein Csa_017920 [Cucumis sativus])

HSP 1 Score: 714.1 bits (1842), Expect = 6.6e-202
Identity = 385/409 (94.13%), Postives = 391/409 (95.60%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRR KT+ DAENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----PDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP    PDANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L   AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 L---AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of HG10019833 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 712.2 bits (1837), Expect = 2.5e-201
Identity = 379/410 (92.44%), Postives = 393/410 (95.85%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSS+LLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQT SSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADY+RP+RVKTKDD EN+S CS  TTVASQL+LSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS--TTVASQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP 300
           GQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEP    P DANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVD 360

Query: 361 EP-QLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EP QLRP+ALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of HG10019833 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 689.1 bits (1777), Expect = 2.3e-194
Identity = 368/409 (89.98%), Postives = 387/409 (94.62%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQT S+PST LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY++RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQ  +RVKT DD ENES CS +TTVASQL+LSDILSYAH+ISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCS-STTVASQLKLSDILSYAHKISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP 300
           GQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEKTIEPMIEP    P DANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+ +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLR +ALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 EPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of HG10019833 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 7.5e-140
Identity = 284/431 (65.89%), Postives = 342/431 (79.35%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+   SS+LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A +I+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDAE---NESFCSTTTTVASQ 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++P+R K ++D E   NES  S++TTV+SQ
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNES-SSSSTTVSSQ 240

Query: 241 LRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK 300
           L+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Sbjct: 241 LKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPK 300

Query: 301 AVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPG 360
            VE+ EK +E +IEPPP    + +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPG
Sbjct: 301 TVENMEKKVEALIEPPPPPEAM-DISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPPPG 360

Query: 361 WKPGDPVPLPPMDSLPVTRVDEPQ-LRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDY 406
           WKPGDPV LPP++S+   R ++ Q +RPS   GLH+PP+ IQVR VQLDIL +DDDSSDY
Sbjct: 361 WKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDSSDY 420

[Close]

BLAST of HG10019833 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-04
Identity = 58/189 (30.69%), Postives = 82/189 (43.39%), Query Frame = 0


Query: 114 STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYDIRAKDAALRAFANK 173
           S  +T   +L L N L    ++++  + +L++   +Q    +I  +I  KD  +   A  
Sbjct: 60  SNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQKEIEEKDKLISTLALN 119

Query: 174 LKDAEQVLD-VLFDDYADYQRPRR-----------VKTKDDAENESFCSTTTTVASQLRL 233
           LKD E  L+  L  D  +                 +K  DDA      S    V  ++  
Sbjct: 120 LKDIESFLENELSQDNVNINNGNASDGIVNEVLIDLKQPDDA-----ASMDNIVNREVSP 179

Query: 234 SDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YN 275
            D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y 
Sbjct: 180 EDLISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRSSVLFTKPPPHVLKYYG 239

[Close]

BLAST of HG10019833 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 722.2 bits (1863), Expect = 1.2e-204
Identity = 387/409 (94.62%), Postives = 393/409 (96.09%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVKT+  AENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of HG10019833 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 722.2 bits (1863), Expect = 1.2e-204
Identity = 387/409 (94.62%), Postives = 393/409 (96.09%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVKT+  AENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of HG10019833 vs. ExPASy TrEMBL
Match: A0A0A0KXB7 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 714.1 bits (1842), Expect = 3.2e-202
Identity = 385/409 (94.13%), Postives = 391/409 (95.60%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRR KT+ DAENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----PDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP    PDANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L   AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 L---AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of HG10019833 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 712.2 bits (1837), Expect = 1.2e-201
Identity = 379/410 (92.44%), Postives = 393/410 (95.85%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSS+LLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQT SSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADY+RP+RVKTKDD EN+S CS  TTVASQL+LSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS--TTVASQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP 300
           GQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEP    P DANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVD 360

Query: 361 EP-QLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EP QLRP+ALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 EPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of HG10019833 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 685.3 bits (1767), Expect = 1.6e-193
Identity = 367/409 (89.73%), Postives = 384/409 (93.89%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSS+LLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQT S+PST LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY++RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQ  +RVKT DD ENES CS TTTVASQL+LSDILSYAH+ISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCS-TTTVASQLKLSDILSYAHKISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP 300
           GQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE     P DANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+ +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVD 360

Query: 361 EPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 406
           EPQLR +ALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 EPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of HG10019833 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 498.4 bits (1282), Expect = 5.3e-141
Identity = 284/431 (65.89%), Postives = 342/431 (79.35%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+   SS+LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A +I+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDAE---NESFCSTTTTVASQ 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++P+R K ++D E   NES  S++TTV+SQ
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNES-SSSSTTVSSQ 240

Query: 241 LRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK 300
           L+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Sbjct: 241 LKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPK 300

Query: 301 AVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPG 360
            VE+ EK +E +IEPPP    + +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPG
Sbjct: 301 TVENMEKKVEALIEPPPPPEAM-DISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPPPG 360

Query: 361 WKPGDPVPLPPMDSLPVTRVDEPQ-LRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDY 406
           WKPGDPV LPP++S+   R ++ Q +RPS   GLH+PP+ IQVR VQLDIL +DDDSSDY
Sbjct: 361 WKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDSSDY 420

The following BLAST results are available for this feature:

BLAST of HG10019833 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882754.1	5.2e-207	94.87	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_008449288.1	2.4e-204	94.62	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] ...	[more]
XP_004142109.1	6.6e-202	94.13	mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN5418...	[more]
XP_022143910.1	2.5e-201	92.44	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_023518528.1	2.3e-194	89.98	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]

BLAST of HG10019833 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	7.5e-140	65.89	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	3.5e-04	30.69	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of HG10019833 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZC1	1.2e-204	94.62	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	1.2e-204	94.62	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KXB7	3.2e-202	94.13	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]
A0A6J1CQ51	1.2e-201	92.44	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A6J1HH73	1.6e-193	89.73	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]

BLAST of HG10019833 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	5.3e-141	65.89	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..271 e-value: 5.3E-7 score: 29.5
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 51..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019833.1	HG10019833.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity