HG10019803 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019803
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein SRC1
Location	Chr04: 25645975 .. 25646289 (+)
RNA-Seq Expression	HG10019803
Synteny	HG10019803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGATTCATCGAGAAAATTGGTGAGAAGCTCCATATTGGAGGAGATCACAACAAAGCCGAGCATAAAGGTGAGCATCACGATGCCCACAAAGGCGACCATCACGATGAACACAAGAAGCACGGCAAATCGGAGGAGCACCATGGAGAAGGCCATAAGGAAGGGCTGATTGACAAGATCAAGGACAAGATCCATGGCGATCATGATGAGAAAGGTGAGAAAGCCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGGTGAGCACCACCACCACGACGGCGGCCATAGCAGCAGCGATAGCGACAGCGACTGA

mRNA sequence

ATGTCAGGATTCATCGAGAAAATTGGTGAGAAGCTCCATATTGGAGGAGATCACAACAAAGCCGAGCATAAAGGTGAGCATCACGATGCCCACAAAGGCGACCATCACGATGAACACAAGAAGCACGGCAAATCGGAGGAGCACCATGGAGAAGGCCATAAGGAAGGGCTGATTGACAAGATCAAGGACAAGATCCATGGCGATCATGATGAGAAAGGTGAGAAAGCCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGGTGAGCACCACCACCACGACGGCGGCCATAGCAGCAGCGATAGCGACAGCGACTGA

Coding sequence (CDS)

ATGTCAGGATTCATCGAGAAAATTGGTGAGAAGCTCCATATTGGAGGAGATCACAACAAAGCCGAGCATAAAGGTGAGCATCACGATGCCCACAAAGGCGACCATCACGATGAACACAAGAAGCACGGCAAATCGGAGGAGCACCATGGAGAAGGCCATAAGGAAGGGCTGATTGACAAGATCAAGGACAAGATCCATGGCGATCATGATGAGAAAGGTGAGAAAGCCGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGGTGAGCACCACCACCACGACGGCGGCCATAGCAGCAGCGATAGCGACAGCGACTGA

Protein sequence

MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDKIKDKIHGDHDEKGEKAEKKKKKEKKKGEHHHHDGGHSSSDSDSD

Homology

[Close]

BLAST of HG10019803 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 3.1e-39
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           MSGFIEKIGEKLHIGGDHN    KGEHHD HKG+HHDEHKKHGKSEEHHGEGHKEGLI+K
Sbjct: 1   MSGFIEKIGEKLHIGGDHN----KGEHHDGHKGEHHDEHKKHGKSEEHHGEGHKEGLIEK 60

Query: 61  IKDKIHGDHDEKGEKAEKKKKKEKKKGEHHHHDGGHSSSDSDSD 105
           IKDKIHGDHDEKGEK +K+KK++KKKGEHHHHDGGHSSSDSDSD
Sbjct: 61  IKDKIHGDHDEKGEKKKKEKKEKKKKGEHHHHDGGHSSSDSDSD 100

[Close]

BLAST of HG10019803 vs. NCBI nr
Match: XP_008443295.1 (PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucumis melo var. makuwa] >TYK25548.1 zinc transporter ZIP6 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           MSGFIEKIGEKLHIGGD     HKGEHHDAHKG+HHDEHKKH K EEHHGEGHKEG+I+K
Sbjct: 1   MSGFIEKIGEKLHIGGD-----HKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEK 60

Query: 61  IKDKIHGDHDEKGEKAEKKKKKEKKKGEH-HHHDGGHSSSDSDSD 105
           IKDKIHG      EK EKKKK++KKKGEH H H GG SSSDSDSD
Sbjct: 61  IKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of HG10019803 vs. NCBI nr
Match: XP_011652200.1 (protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 9.8e-25
Identity = 84/111 (75.68%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDA----HKGDHHDEHKKHGKSEEHHGEG-HKE 60
           MSGFIEKIGEKLHIGGD     HKGEHHDA    HKG+HHDEHKKH   EEHHGEG HKE
Sbjct: 1   MSGFIEKIGEKLHIGGD-----HKGEHHDAHKGEHKGEHHDEHKKH---EEHHGEGAHKE 60

Query: 61  GLIDKIKDKIH-GDHDEKGEKAEKKKKKEKKKGEH-HHHDGGHSSSDSDSD 105
           G++DKIKDKIH GDH E  EK EKKKK++KKKGEH H H+GG SSSDSDSD
Sbjct: 61  GIMDKIKDKIHGGDHHE--EKGEKKKKEKKKKGEHGHKHEGGDSSSDSDSD 101

[Close]

BLAST of HG10019803 vs. NCBI nr
Match: XP_022942109.1 (protein SRC1-like [Cucurbita moschata])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 78/106 (73.58%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           M+G +EKIGEKLHIGGDH K EHKGEHH+    D H+  KKHG+  EHHGEGHKEGL++K
Sbjct: 1   MAGIMEKIGEKLHIGGDH-KGEHKGEHHEK---DKHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGD-HDEKGEKAEKKKKKEKKKGEHHHHDGGH-SSSDSDSD 105
           IKDKIHGD HDEKGEK  KKKK++KKKGE  HH+GGH SSSDSDSD
Sbjct: 61  IKDKIHGDHHDEKGEK--KKKKEKKKKGE--HHEGGHSSSSDSDSD 98

[Close]

BLAST of HG10019803 vs. NCBI nr
Match: KAG6596975.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           M+G +EKIGEKLHIGGDH K EHKGEHH+  K +H  E KKHG+  EHHGEGHKEGL++K
Sbjct: 1   MAGIMEKIGEKLHIGGDH-KGEHKGEHHEKDKHEHEHE-KKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGD-HDEKGEKAEKKKKKEKKKGEHHHHDGGH-SSSDSDSD 105
           IKDKIHGD HD+KGEK  KKKK++KKKGE  HH+GGH SSSDSDSD
Sbjct: 61  IKDKIHGDHHDDKGEK--KKKKEKKKKGE--HHEGGHSSSSDSDSD 100

[Close]

BLAST of HG10019803 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-21
Identity = 72/108 (66.67%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHH----DAHKGDHHDEHKKHGKSEEHHGEGHKEG 60
           MSG I KI E LH+GG H K EHKGEHH      HKG+HH EHK   K E+HHGE HKEG
Sbjct: 1   MSGIIHKIEETLHVGG-HKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGE-HKEG 60

Query: 61  LIDKIKDKIHGDHDEKGEKAEKKKKKEKKKGEHHHHDGGHSSSDSDSD 105
           L+DKIKDKIHGD  +KG   EKKKKK+KKK EH H   GHSSS SDSD
Sbjct: 61  LVDKIKDKIHGDGHDKG---EKKKKKDKKKKEHGHDHHGHSSS-SDSD 102

[Close]

BLAST of HG10019803 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-13
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           M+G I KIG+ LHIGG + + EHK E          +EHKKH   +EH    HKEG++DK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKE----------EEHKKH--VDEHKSGEHKEGIVDK 60

Query: 61  IKDKIHG----DHDEKGEKAEKKKKKEKKKGEHHHHDGGHSSSDSDSD 105
           IKDKIHG     HD +G+  + +KKK+K K E  HHD GH SS SDSD
Sbjct: 61  IKDKIHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSD 96

[Close]

BLAST of HG10019803 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           MSGFIEKIGEKLHIGGD     HKGEHHDAHKG+HHDEHKKH K EEHHGEGHKEG+I+K
Sbjct: 1   MSGFIEKIGEKLHIGGD-----HKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEK 60

Query: 61  IKDKIHGDHDEKGEKAEKKKKKEKKKGEH-HHHDGGHSSSDSDSD 105
           IKDKIHG      EK EKKKK++KKKGEH H H GG SSSDSDSD
Sbjct: 61  IKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of HG10019803 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           MSGFIEKIGEKLHIGGD     HKGEHHDAHKG+HHDEHKKH K EEHHGEGHKEG+I+K
Sbjct: 1   MSGFIEKIGEKLHIGGD-----HKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEK 60

Query: 61  IKDKIHGDHDEKGEKAEKKKKKEKKKGEH-HHHDGGHSSSDSDSD 105
           IKDKIHG      EK EKKKK++KKKGEH H H GG SSSDSDSD
Sbjct: 61  IKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of HG10019803 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 78/106 (73.58%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           M+G +EKIGEKLHIGGDH K EHKGEHH+    D H+  KKHG+  EHHGEGHKEGL++K
Sbjct: 1   MAGIMEKIGEKLHIGGDH-KGEHKGEHHEK---DKHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGD-HDEKGEKAEKKKKKEKKKGEHHHHDGGH-SSSDSDSD 105
           IKDKIHGD HDEKGEK  KKKK++KKKGE  HH+GGH SSSDSDSD
Sbjct: 61  IKDKIHGDHHDEKGEK--KKKKEKKKKGE--HHEGGHSSSSDSDSD 98

[Close]

BLAST of HG10019803 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           MSG +EKIGEKLHIGGDH K EHKGEHH+    D H+  KKHG+  EHHGEGHKEGL++K
Sbjct: 1   MSGIMEKIGEKLHIGGDH-KGEHKGEHHEK---DKHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGDHDEKGEKAEKKKKKEKKKGEHHHHDGGH-SSSDSDSD 105
           IKDKIHG  D   EK EKKKKK++KK +  H +GGH SSSDSDSD
Sbjct: 61  IKDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of HG10019803 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22
Identity = 71/105 (67.62%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           MSG +EKIGEKLHIGGDH K EHKG+HH+    D H+  KKHG+  EHHGEGHKEGL++K
Sbjct: 1   MSGIMEKIGEKLHIGGDH-KGEHKGDHHEK---DKHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGDHDEKGEKAEKKKKKEKKKGEHHHHDGGH-SSSDSDSD 105
           IKDKIHG  D   EK EKKKKK++KK +  H +GGH SSSDSDSD
Sbjct: 61  IKDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of HG10019803 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKAEHKGEHHDAHKGDHHDEHKKHGKSEEHHGEGHKEGLIDK 60
           M+G I KIG+ LHIGG + + EHK E          +EHKKH   +EH    HKEG++DK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKE----------EEHKKH--VDEHKSGEHKEGIVDK 60

Query: 61  IKDKIHG----DHDEKGEKAEKKKKKEKKKGEHHHHDGGHSSSDSDSD 105
           IKDKIHG     HD +G+  + +KKK+K K E  HHD GH SS SDSD
Sbjct: 61  IKDKIHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSD 96

The following BLAST results are available for this feature:

BLAST of HG10019803 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903205.1	3.1e-39	88.46	protein SRC1 [Benincasa hispida]	[more]
XP_008443295.1	2.3e-29	78.10	PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucu...	[more]
XP_011652200.1	9.8e-25	75.68	protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cu...	[more]
XP_022942109.1	1.1e-23	73.58	protein SRC1-like [Cucurbita moschata]	[more]
KAG6596975.1	1.4e-23	73.58	Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10019803 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	4.0e-21	66.67	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	2.4e-13	50.93	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of HG10019803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF86	1.1e-29	78.10	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	1.1e-29	78.10	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]
A0A6J1FQD3	5.2e-24	73.58	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]
A0A6J1IAZ2	2.2e-22	68.57	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A6J1I7B7	4.9e-22	67.62	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]

BLAST of HG10019803 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	1.7e-14	50.93	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..78
None	No IPR available	PANTHER	PTHR34941:SF4	PROTEIN SRC1	coord: 1..104
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019803.1	HG10019803.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding