HG10019707 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019707
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionamino acid transporter AVT1I isoform X2
LocationChr04: 24738962 .. 24742937 (+)
RNA-Seq ExpressionHG10019707
SyntenyHG10019707
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGAATCTCTCCATCGCACATTATCAGGCAACCTCCATGCGCCGCTTCTAAACGGAGACAAGCAAAACGACGTCGAACAGCAACGAATCACCGCCACCAATGGCGGTGGCGCCACCTCCTTCATCAAAACCTGCTTCAATGGACTCAACGCTCTTTCAGGTTCTAATTTTCTCTCTCTATATATATATTTTTTGTTTGATTTTGTTTGTTGTTGCCGCCACCGCTTCTCCGCCGCCTATGGTTTTCCTTTTCTTCTAGGGTTTCCAAATGCTTGGATTTGATCTTATCTTCTCTCTGTTTTATTCACCAAGTGAAATTGAGAGTTTACAGATAAGAATGCTAGTTGAATCTTATTTTAGACACATGTTTAGGAATTAAAAAAGAATAATAATAGACCCAAGTTGAGAATTTAATACATATTAATGGATCTGCATCTTAAATTACCGTCGAGCTAAACTAACTTAAAAAAAAAAAAGATAGTAATGCCTCTTATTTCAATGATGTAATTTATATATTAATTTTTTTCTTAAGTAGAAAAGTTAAGCTTTTAACTTCAAAATTGATAGTACAAATAGGAAGATATTTGTTTTCTCACTAGCTGCTGATCTTACGAGGCTCGTCTCTTCAAAGATTACAGTCCTTCTACTATAGCAATAAATTTATAAGCTTGTTGTAACAATTAGATCGTTGGGGTTTTTTCTTCTAGTCCTTTTGTGTACTTATCCTACTCTTTTCATGCTTATTGAATATCAATGTAAAGGGAGATGATGAGGGTGCTAAGATGGTGTCTACCTAGTGGAGATAATTAGGTGCACTTTTGTTCTAATGTATCTTTTTTTTAAAAAAAAAAAAATACAGCCTAGAGAGCACTAAGTATACTAGTAGAAATAGATTTTTAAAATATTACAACTAAAATTACTTTTTGTTTAGAAATAGATTAAACAGGTGTTTTGGAAAAATTACCTGGTGTAGCTAGATAAATAATTAGAGACATATTAGAATGTTCTTAGTGTGGTTTCAAGGTAATGGTGTGAATTTATTAACCACTTTAATTATTTCAGTCTCTTCAAATAATTGATACCTAATTCTACTGATTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTGTCTACCATGTTCTATGAAAACAAATTTTTCTAACCACATTATTACGCAGAAGAATCTAGAAAATGAAGAAAAAAAATTACTAAATAGATTTTTATTGGAATTTCTCAAAAGCTTTTGAAAAATTATAAAGAAAACATTAAATCAAATTAGGATAAAAAAACAAGAAGCATCGTTTTTTGAATGAGTTGATTCTTAGCGGTCGGACTCTACTTTTTTGCTTTCTCAGAGCTCTGGAGTTTCTGAATAAAAAACGAGAAAATGACAAGAGGAAAAACAAAATAGTTTCTGTACTAGAGTTCTTTATTTCTTTTCTAAAATAAAAAATAAAAATATATATAATAAAACAGAAATAGTAACAAAAAAGCTTTAGTTATACATTTTCCTAAAAAGTAAACGACTTGCAATCATTTTGCTTTTTCTATTACTAGATTTTATAACAAAATTCAAAAAAATTTAGAACCTTTTGTTAAGGTTTCCTAATTAACAAAAAAAAAAAATAACTAAGTAAATAATCAGTAATCAATAATCAATAATTATTTTTAGTAAGAATTAAGACTTGGAAGTTAGTTCCGATGTGAATGTCTACGGAAAAACGATATAGTTGAAAAATATAAAACAATAAGAATTAAATTAAAAAGTTTATTATACTAGAGATTAAATTGAAAAAAAATGTCCAATTATTATAAACGAAAATATTTATTTAAAAAATTATTATAAATAGAAAAAATATCAAACTATTTATAAATGTAGAAAAAATTCACTAGAAGTTTATTGTGTCTTCAAAACTTTTTTTAAAAAAACCTATTTATTTTGTCTAAAAACTTTAGAAACATTCATAATTTAGTATTAGTTTAAGAGAGAGAAAAAAAAAGAGAAATCGAACTCTAAATATGAAAATAGAAGCGAAAAAAATTAGAAAAGAAAGAACATATTTGTTCCTTATTGATTTGAATTTATAATTTCTTTAGTATGAAATACGAGTCTAAAATAATTGAGGGGAAGACAAAGGAAAAATAGACAAAACTTTGTAGAATAATTTTTGTCGATAGCCAAAATTTTGATAAAGTGATGGCTTTAGGGAAAGTCATACGTGCCAAACAAGGCTCTAGTGAAATTGTCAATAATGGAGCTTCCCAATCCAACGAGACCTTTTGTTTTTCTTTTTTCCAAATATTTGATTTAAGCTTACTTTTTTGCTTCTCATGATCAAGCTAAATGGACGATGATCTTCATTTGGCTTTTTCTACTTGGTTGAGTTTCTTTAAAATTCTTTTATTGTTACGTGTTCAATTGCTATATGATTACTATTTTGTTTTACTTTATGATTATGTGGATAAGAATTCACTTTTCTTTTATGATTATTATTAGCTTAAGTTATCAGTTTGGTAAATAAACTTTTAAAGTTCTTAATAGGTAAGCATTTTCATTCGGTTGGGTTTGGTTGTTTTGGATTGGTTCAAACAAGTATAAATTGGGAGTCACTCCAAACTAATGTCTAGTGAGCATAAGACACTATTCAAGCCAAATGACTTTAATTGATCTCTCAAATATGAAATTAAATTTTGTGTGGAAAAAGCTTTCAACAACTGAGAATGAACACTACCTACAATAGTCTTATGGATTAATTTTTTTTTTTTTTTTTTGATATCCGTGAGTGTCTAGGTCAACTTACGCACACCTCGATTAATCTCAATTTCTCCGTAGGATATTAAATCTTAAGAAAGTGGCCACCATGGATTGAACCCACAACCCTTTAGCCCTCGCCTTTTTTAAATGTTCCCACCACCACTAGGTCAACCCATGATGGTTATAGATTAACCCTTTTTGAAGGATGATTAATGAAAAATAAGTAATTCAACTGCCAAACTAGCTCAAGTGTGTTTAGGAAGGAATAAAGGTGCCTAACCCACTTTCAAATCCTTTAAAACTAATTTTGTGCGCCAAACTAGCAACACCCAAATTAGAGGACTTAAAGTTAGTTTCAAAACTAATTTTATCTATACTAAAGTAAGCATAACTCAACTGACATAAATTAGATCAACTTCAATGTGAAATGTTCAAATCTCCAACTCTATATTAAACTCAAAAAATAAAAATAAAAAATAAAAAATCTAATTCTATTGGTCATTTAGATTTGAGCACAGTGCATCGGTAATTGACATGTGCTTCTTTTCTTGATATTGGAAGTTAGTCTCACATAATTTTCTATTATCAATTACTATATAATAAATAGAATCTGTCTCGTTTTTTAACCTTTTGGTCTTTTATTTTTTTTATTTTTTAATAGTTAAGCTCAGAGATGTCCAATTAATTCGTGGAATTAGGGCCCTGCCCCAAATGGGGTGGGCAATTCCCAATTAGACGGGGAATGGGGAGGAAATTTTCTCCATTAGCTAAATGGGAAAGGGGACGGGATTATATTCTCCGCCTTTGTCCCCATCTCCGCCCTGCCCCACTTCGCTTAAATATATATATATTAATTAAACATAATTATAATTATAATTTCTTATTTGATATATATTTTTTAATTAAGTTGAGATTATGATAGGTTGGTGTTATATTTAAAATTTAATTTTTAGAAATTATGAAAATTAAACATTTTAATTATATCTTTGTTATATATGAGTGAGATATTTAACTATTTAAGTAAAAAAAATTCATAGTAGTGATTTAAGTTAATTAATTTTTTTTAAAAAAAAATCCAAACGGAGAAAATTTTTTCGTGAGGAATCCTTGCACAGATCCTTATGGGAAATTTAGCGAGGATGGAGAATGAAATTGGTAGCGAGAACGGGGATGGAGAAGCCATCCTCGGTCCCACCCTACCGCGTGGACATCTCTAG

mRNA sequence

ATGGATGATGAATCTCTCCATCGCACATTATCAGGCAACCTCCATGCGCCGCTTCTAAACGGAGACAAGCAAAACGACGTCGAACAGCAACGAATCACCGCCACCAATGGCGGTGGCGCCACCTCCTTCATCAAAACCTGCTTCAATGGACTCAACGCTCTTTCAGGAATCCTTGCACAGATCCTTATGGGAAATTTAGCGAGGATGGAGAATGAAATTGGTAGCGAGAACGGGGATGGAGAAGCCATCCTCGGTCCCACCCTACCGCGTGGACATCTCTAG

Coding sequence (CDS)

ATGGATGATGAATCTCTCCATCGCACATTATCAGGCAACCTCCATGCGCCGCTTCTAAACGGAGACAAGCAAAACGACGTCGAACAGCAACGAATCACCGCCACCAATGGCGGTGGCGCCACCTCCTTCATCAAAACCTGCTTCAATGGACTCAACGCTCTTTCAGGAATCCTTGCACAGATCCTTATGGGAAATTTAGCGAGGATGGAGAATGAAATTGGTAGCGAGAACGGGGATGGAGAAGCCATCCTCGGTCCCACCCTACCGCGTGGACATCTCTAG

Protein sequence

MDDESLHRTLSGNLHAPLLNGDKQNDVEQQRITATNGGGATSFIKTCFNGLNALSGILAQILMGNLARMENEIGSENGDGEAILGPTLPRGHL
Homology
[Close]
BLAST of HG10019707 vs. NCBI nr
Match: XP_038905111.1 (amino acid transporter AVT1J-like isoform X2 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 1  MDDESLHRTLSGNLHAPLL-NGDKQNDVEQQRITATNGGGATSFIKTCFNGLNALSGI 58
          MDD+S+H  LSG+L APLL NGDKQNDVEQQR TA NGGGATSFIK CFNGLNALSG+
Sbjct: 1  MDDDSVHHVLSGHLLAPLLNNGDKQNDVEQQRTTAANGGGATSFIKACFNGLNALSGV 58

[Close]
BLAST of HG10019707 vs. NCBI nr
Match: XP_004147475.1 (amino acid transporter AVT1J isoform X2 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 6.3e-15
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MDDESLHRTLSGNLHAPLLNGDKQ-NDVEQQRITATNGGGATSFIKTCFNGLNALSGI 58
          MDDE +HRTLSG+LHAPLLNG KQ NDVE Q  T  N GG TSF+KTCFNGLNALSG+
Sbjct: 1  MDDEFVHRTLSGHLHAPLLNGHKQNNDVEHQPTTIVNAGGTTSFVKTCFNGLNALSGV 58

[Close]
BLAST of HG10019707 vs. NCBI nr
Match: XP_008443410.1 (PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-14
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 1  MDDESLHRTLSGNLHAPLLNGDKQN-DVEQQ-RITATNGGGATSFIKTCFNGLNALSGI 58
          MDDE +HRTLSG+LHAPLLNG KQN DVE Q   T  N GGATSF+KTCFNGLNALSG+
Sbjct: 1  MDDEFVHRTLSGHLHAPLLNGHKQNDDVEHQPTTTIVNAGGATSFVKTCFNGLNALSGV 59

[Close]
BLAST of HG10019707 vs. NCBI nr
Match: KAG6588368.1 (Amino acid transporter AVT1J, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022217.1 Amino acid transporter AVT1J [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 4  ESLHRTLSGNLHAPLLNGDKQNDVEQQRITATNGGGATSFIKTCFNGLNALSGI 58
          ES+  TL G+LH PLL+GDKQNDVE Q   A  G GAT+FIKTCFNGLNALSG+
Sbjct: 3  ESVDTTLPGHLHEPLLDGDKQNDVELQPTAAAYGAGATNFIKTCFNGLNALSGV 56

[Close]
BLAST of HG10019707 vs. NCBI nr
Match: XP_022933849.1 (amino acid transporter AVT1I isoform X2 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 4  ESLHRTLSGNLHAPLLNGDKQNDVEQQRITATNGGGATSFIKTCFNGLNALSGI 58
          ES+  TL G+LH PLL+GDKQNDVE Q   A  G GAT+FIKTCFNGLNALSG+
Sbjct: 3  ESVDTTLPGHLHEPLLDGDKQNDVELQPTAAAYGAGATNFIKTCFNGLNALSGV 56

[Close]
BLAST of HG10019707 vs. ExPASy TrEMBL
Match: A0A1S3B7X7 (vacuolar amino acid transporter 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487001 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 1  MDDESLHRTLSGNLHAPLLNGDKQN-DVEQQ-RITATNGGGATSFIKTCFNGLNALSGI 58
          MDDE +HRTLSG+LHAPLLNG KQN DVE Q   T  N GGATSF+KTCFNGLNALSG+
Sbjct: 1  MDDEFVHRTLSGHLHAPLLNGHKQNDDVEHQPTTTIVNAGGATSFVKTCFNGLNALSGV 59

[Close]
BLAST of HG10019707 vs. ExPASy TrEMBL
Match: A0A6J1F0W3 (amino acid transporter AVT1I isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441142 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 4  ESLHRTLSGNLHAPLLNGDKQNDVEQQRITATNGGGATSFIKTCFNGLNALSGI 58
          ES+  TL G+LH PLL+GDKQNDVE Q   A  G GAT+FIKTCFNGLNALSG+
Sbjct: 3  ESVDTTLPGHLHEPLLDGDKQNDVELQPTAAAYGAGATNFIKTCFNGLNALSGV 56

[Close]
BLAST of HG10019707 vs. ExPASy TrEMBL
Match: A0A6J1L1M9 (amino acid transporter AVT1I-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499028 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-11
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 4  ESLHRTLSGNLHAPLLNGDKQNDVE-QQRITATNGGGATSFIKTCFNGLNALSGI 58
          ES+ RTL G+LH PLL GDKQNDVE Q    A  G GAT+FIKTCFNGLNALSG+
Sbjct: 3  ESVDRTLPGHLHEPLLYGDKQNDVELQPTAAAAYGAGATNFIKTCFNGLNALSGV 57

[Close]
BLAST of HG10019707 vs. ExPASy TrEMBL
Match: A0A6J1E227 (amino acid transporter AVT1I-like OS=Momordica charantia OX=3673 GN=LOC111025280 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.2e-04
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 14 LHAPLLNGDKQN-DVEQQRITATNGGGATSFIKTCFNGLNALSGI 58
          + APLL  +KQN DVE Q+ +A   G ATSF+KTCFNGLNALSG+
Sbjct: 1  MDAPLLIEEKQNDDVELQQSSA--NGSATSFVKTCFNGLNALSGV 43

The following BLAST results are available for this feature:
BLAST of HG10019707 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905111.12.6e-1681.03amino acid transporter AVT1J-like isoform X2 [Benincasa hispida][more]
XP_004147475.16.3e-1575.86amino acid transporter AVT1J isoform X2 [Cucumis sativus][more]
XP_008443410.14.1e-1476.27PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cucumis melo][more]
KAG6588368.11.9e-1170.37Amino acid transporter AVT1J, partial [Cucurbita argyrosperma subsp. sororia] >K... [more]
XP_022933849.11.9e-1170.37amino acid transporter AVT1I isoform X2 [Cucurbita moschata][more]
BLAST of HG10019707 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10019707 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B7X72.0e-1476.27vacuolar amino acid transporter 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1F0W39.2e-1270.37amino acid transporter AVT1I isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1L1M95.9e-1170.91amino acid transporter AVT1I-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1E2279.2e-0464.44amino acid transporter AVT1I-like OS=Momordica charantia OX=3673 GN=LOC111025280... [more]
BLAST of HG10019707 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019707.1HG10019707.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006865 amino acid transport
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015293 symporter activity