HG10019635 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019635
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 23991967 .. 23992302 (-)
RNA-Seq Expression	HG10019635
Synteny	HG10019635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGCAAACAGAAGCTGGGCTTCACAGCTTCATTATCCCAAGAAGCCTTCAAATTTGTTTCCAATCATTTTCTCCCCTCTTTCCCCCTCTTCACCTTCCTCCTAACACACCCACAATACTCTCTTTCACCCAACCTTCATCCTATTGACAGCTTCAACTTCAAAGCAATTCTCTCCCACAGGTTCCTGATCTCAACTCTTCTATTCTCAGCAATCATCTTCTTCCTTGACCTTCTCTGCACAATCTCAACAGTCTCAATATCAGCAGCATTGTATGGAGAAAACACCCTAATGGGTTTCAAAGAGATTCTGGTTCAAGTCAGCATACTGTAG

mRNA sequence

ATGGCTGGCAAACAGAAGCTGGGCTTCACAGCTTCATTATCCCAAGAAGCCTTCAAATTTGTTTCCAATCATTTTCTCCCCTCTTTCCCCCTCTTCACCTTCCTCCTAACACACCCACAATACTCTCTTTCACCCAACCTTCATCCTATTGACAGCTTCAACTTCAAAGCAATTCTCTCCCACAGGTTCCTGATCTCAACTCTTCTATTCTCAGCAATCATCTTCTTCCTTGACCTTCTCTGCACAATCTCAACAGTCTCAATATCAGCAGCATTGTATGGAGAAAACACCCTAATGGGTTTCAAAGAGATTCTGGTTCAAGTCAGCATACTGTAG

Coding sequence (CDS)

ATGGCTGGCAAACAGAAGCTGGGCTTCACAGCTTCATTATCCCAAGAAGCCTTCAAATTTGTTTCCAATCATTTTCTCCCCTCTTTCCCCCTCTTCACCTTCCTCCTAACACACCCACAATACTCTCTTTCACCCAACCTTCATCCTATTGACAGCTTCAACTTCAAAGCAATTCTCTCCCACAGGTTCCTGATCTCAACTCTTCTATTCTCAGCAATCATCTTCTTCCTTGACCTTCTCTGCACAATCTCAACAGTCTCAATATCAGCAGCATTGTATGGAGAAAACACCCTAATGGGTTTCAAAGAGATTCTGGTTCAAGTCAGCATACTGTAG

Protein sequence

MAGKQKLGFTASLSQEAFKFVSNHFLPSFPLFTFLLTHPQYSLSPNLHPIDSFNFKAILSHRFLISTLLFSAIIFFLDLLCTISTVSISAALYGENTLMGFKEILVQVSIL

Homology

[Close]

BLAST of HG10019635 vs. NCBI nr
Match: XP_023521726.1 (uncharacterized protein LOC111785557 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 67/145 (46.21%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFKFVSNH-------FLPSFPLFTFLLTH------------------ 63
           K KLGF+AS  +EAFK + NH        + SFPLF  LL H                  
Sbjct: 9   KSKLGFSASF-REAFKILFNHPNFISLVLISSFPLFASLLAHHILLHPTFIQLLKLLSEE 68

Query: 64  ------PQYSLSPNL---------HPIDSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                 P+Y +   L            D  NFKA LSH+FLISTL+ SA+IFFLDLL TI
Sbjct: 69  NPSDPSPRYIIRCRLDGSTACISQRSSDDNNFKATLSHKFLISTLISSALIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. NCBI nr
Match: XP_022935546.1 (uncharacterized protein LOC111442387 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 67/145 (46.21%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFKFVSNH-------FLPSFPLFTFLLTH------------------ 63
           K KLGF+AS  +EAFK + NH        + SFPLF  LL H                  
Sbjct: 9   KSKLGFSASF-REAFKILFNHPKFISLVLISSFPLFASLLAHHILLHPTFIQLLKLLSEE 68

Query: 64  ------PQYSLSPNL---------HPIDSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                 P+Y +   L            D  NFKA LSH+FLISTL+ SA+IFFLDLL TI
Sbjct: 69  NPFDPSPRYIIRCRLDGSTACISQRSSDDNNFKATLSHKFLISTLISSALIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. NCBI nr
Match: XP_022983226.1 (uncharacterized protein LOC111481872 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-14
Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFKFVSNH-------FLPSFPLFTFLLTH------------------ 63
           K KLGF+AS  +EAFK + NH        + SFPLF  LL H                  
Sbjct: 9   KPKLGFSASF-REAFKILFNHPNFISLVLIFSFPLFASLLAHHILLHPTFIQLLKLLSEE 68

Query: 64  ------PQYSLSPNL---------HPIDSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                 P+Y +   L            D  NFK  LSH+FLISTL+ SA+IFFLDLL TI
Sbjct: 69  NPVDPSPRYIIRCQLGGSTACISQRSPDDDNFKPTLSHKFLISTLISSALIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. NCBI nr
Match: XP_011652270.1 (uncharacterized protein LOC105435005 [Cucumis sativus] >KGN59647.1 hypothetical protein Csa_000758 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-13
Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFK-------FVSNHFLPSFPLFTFLLT-----HPQY---------- 63
           KQKLGF+ASL +EAFK       F+S   + SFP F  LL      HP +          
Sbjct: 9   KQKLGFSASL-REAFKIFFHCPNFISLVIVFSFPFFASLLAHHILLHPTFVQLLKLLSQE 68

Query: 64  -------------SLSPNLHPI-----DSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                         L    H +     D++N K  LSHRFLISTLL S +IFFLDLL TI
Sbjct: 69  NPFDPSQRYIIRCQLGDTRHCLSQRSSDNYNLKETLSHRFLISTLLSSVLIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. NCBI nr
Match: XP_038904923.1 (uncharacterized protein LOC120091133 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-13
Identity = 67/145 (46.21%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFK-------FVSNHFLPSFPLFTFLLTH----------------PQ 63
           KQKLGF+ASL +EAFK       F+    + SFPLF  LL H                 +
Sbjct: 20  KQKLGFSASL-REAFKILFDCPNFIFLIVVISFPLFAALLAHHVLLHPTFLQLLKLLSQE 79

Query: 64  YSLSPNLHPI-----------------DSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
               P+   I                 D+ NF A LSHRFLISTLL S +IFFLDLL TI
Sbjct: 80  NPYDPSQRFIIRCQLDDGTDCFSQRSSDNDNFTANLSHRFLISTLLSSTLIFFLDLLSTI 139

[Close]

BLAST of HG10019635 vs. ExPASy TrEMBL
Match: A0A6J1F4Z1 (uncharacterized protein LOC111442387 OS=Cucurbita moschata OX=3662 GN=LOC111442387 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 67/145 (46.21%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFKFVSNH-------FLPSFPLFTFLLTH------------------ 63
           K KLGF+AS  +EAFK + NH        + SFPLF  LL H                  
Sbjct: 9   KSKLGFSASF-REAFKILFNHPKFISLVLISSFPLFASLLAHHILLHPTFIQLLKLLSEE 68

Query: 64  ------PQYSLSPNL---------HPIDSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                 P+Y +   L            D  NFKA LSH+FLISTL+ SA+IFFLDLL TI
Sbjct: 69  NPFDPSPRYIIRCRLDGSTACISQRSSDDNNFKATLSHKFLISTLISSALIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. ExPASy TrEMBL
Match: A0A6J1J1I2 (uncharacterized protein LOC111481872 OS=Cucurbita maxima OX=3661 GN=LOC111481872 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFKFVSNH-------FLPSFPLFTFLLTH------------------ 63
           K KLGF+AS  +EAFK + NH        + SFPLF  LL H                  
Sbjct: 9   KPKLGFSASF-REAFKILFNHPNFISLVLIFSFPLFASLLAHHILLHPTFIQLLKLLSEE 68

Query: 64  ------PQYSLSPNL---------HPIDSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                 P+Y +   L            D  NFK  LSH+FLISTL+ SA+IFFLDLL TI
Sbjct: 69  NPVDPSPRYIIRCQLGGSTACISQRSPDDDNFKPTLSHKFLISTLISSALIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. ExPASy TrEMBL
Match: A0A0A0LG51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G835840 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFK-------FVSNHFLPSFPLFTFLLT-----HPQY---------- 63
           KQKLGF+ASL +EAFK       F+S   + SFP F  LL      HP +          
Sbjct: 9   KQKLGFSASL-REAFKIFFHCPNFISLVIVFSFPFFASLLAHHILLHPTFVQLLKLLSQE 68

Query: 64  -------------SLSPNLHPI-----DSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
                         L    H +     D++N K  LSHRFLISTLL S +IFFLDLL TI
Sbjct: 69  NPFDPSQRYIIRCQLGDTRHCLSQRSSDNYNLKETLSHRFLISTLLSSVLIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. ExPASy TrEMBL
Match: A0A5D3CUB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00110 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFK-------FVSNHFLPSFPLFTFLLT-----HPQY----SLSPNL 63
           KQKLGF+A+L +EAFK       F+S   + S PLF  LL      HP +     L    
Sbjct: 9   KQKLGFSAAL-REAFKIFFHCPNFISLVIIFSLPLFASLLAYHILLHPTFVQLLKLLSQE 68

Query: 64  HPI------------------------DSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
           +P                         D++NFK  LSHRFLISTLL S +IFFLDLL TI
Sbjct: 69  NPFDPSQGYIIRCQLGDTTDCFSQRSSDNYNFKETLSHRFLISTLLSSVLIFFLDLLSTI 128

[Close]

BLAST of HG10019635 vs. ExPASy TrEMBL
Match: A0A1S4DUQ5 (uncharacterized protein LOC103487071 OS=Cucumis melo OX=3656 GN=LOC103487071 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 4   KQKLGFTASLSQEAFK-------FVSNHFLPSFPLFTFLLT-----HPQY----SLSPNL 63
           KQKLGF+A+L +EAFK       F+S   + S PLF  LL      HP +     L    
Sbjct: 30  KQKLGFSAAL-REAFKIFFHCPNFISLVIIFSLPLFASLLAYHILLHPTFVQLLKLLSQE 89

Query: 64  HPI------------------------DSFNFKAILSHRFLISTLLFSAIIFFLDLLCTI 109
           +P                         D++NFK  LSHRFLISTLL S +IFFLDLL TI
Sbjct: 90  NPFDPSQGYIIRCQLGDTTDCFSQRSSDNYNFKETLSHRFLISTLLSSVLIFFLDLLSTI 149

The following BLAST results are available for this feature:

BLAST of HG10019635 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521726.1	2.0e-15	46.21	uncharacterized protein LOC111785557 [Cucurbita pepo subsp. pepo]	[more]
XP_022935546.1	2.6e-15	46.21	uncharacterized protein LOC111442387 [Cucurbita moschata]	[more]
XP_022983226.1	2.9e-14	45.52	uncharacterized protein LOC111481872 [Cucurbita maxima]	[more]
XP_011652270.1	4.1e-13	45.52	uncharacterized protein LOC105435005 [Cucumis sativus] >KGN59647.1 hypothetical ...	[more]
XP_038904923.1	9.2e-13	46.21	uncharacterized protein LOC120091133 [Benincasa hispida]	[more]

BLAST of HG10019635 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4Z1	1.2e-15	46.21	uncharacterized protein LOC111442387 OS=Cucurbita moschata OX=3662 GN=LOC1114423...	[more]
A0A6J1J1I2	1.4e-14	45.52	uncharacterized protein LOC111481872 OS=Cucurbita maxima OX=3661 GN=LOC111481872...	[more]
A0A0A0LG51	2.0e-13	45.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G835840 PE=4 SV=1	[more]
A0A5D3CUB1	5.8e-13	45.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DUQ5	5.8e-13	45.52	uncharacterized protein LOC103487071 OS=Cucumis melo OX=3656 GN=LOC103487071 PE=...	[more]

BLAST of HG10019635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019635.1	HG10019635.1	mRNA