HG10019606 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019606
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	Chr04: 23715904 .. 23716479 (+)
RNA-Seq Expression	HG10019606
Synteny	HG10019606

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCACCCTCTCCACTGCGTCTCTCCGATTTCCATCTTCTTCTTCAACCTCTTATCCATCAAATTTCTCCCATTCCCTCAAATCCACTCCTCTCAATTTTCCCTTTTCATTCTCCTCCACCAATCTCTCTCTTCGCCTCGTTCATCACCGCCCAATCTCCGCCGTTGCTGTGCCGGAAAAAGTTTCAGAAATCGGCGATGTCATCTCCAAATTGACTCTAGAAGAGGCTCGAACCCTTGTTGATTACCTCCAAGAGAAACTTGGCGTTTCCGCTGCCTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGCGACGATGCGGCCGCTGCTGTCGAGGAGAAAACGGAGTTCGATGTTGTTATTGAGGAAGTGCCGAGTAATGCGAGGATTGCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAAGAGCTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGAATTTCGAAGGAAGAGGCGGAAGATGCTAAGAAGCAGCTTGAAGAGGCTGGTGCAAAGATTGCCATAGTTTGA

mRNA sequence

ATGTCTTCCACCCTCTCCACTGCGTCTCTCCGATTTCCATCTTCTTCTTCAACCTCTTATCCATCAAATTTCTCCCATTCCCTCAAATCCACTCCTCTCAATTTTCCCTTTTCATTCTCCTCCACCAATCTCTCTCTTCGCCTCGTTCATCACCGCCCAATCTCCGCCGTTGCTGTGCCGGAAAAAGTTTCAGAAATCGGCGATGTCATCTCCAAATTGACTCTAGAAGAGGCTCGAACCCTTGTTGATTACCTCCAAGAGAAACTTGGCGTTTCCGCTGCCTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGCGACGATGCGGCCGCTGCTGTCGAGGAGAAAACGGAGTTCGATGTTGTTATTGAGGAAGTGCCGAGTAATGCGAGGATTGCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAAGAGCTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGAATTTCGAAGGAAGAGGCGGAAGATGCTAAGAAGCAGCTTGAAGAGGCTGGTGCAAAGATTGCCATAGTTTGA

Coding sequence (CDS)

ATGTCTTCCACCCTCTCCACTGCGTCTCTCCGATTTCCATCTTCTTCTTCAACCTCTTATCCATCAAATTTCTCCCATTCCCTCAAATCCACTCCTCTCAATTTTCCCTTTTCATTCTCCTCCACCAATCTCTCTCTTCGCCTCGTTCATCACCGCCCAATCTCCGCCGTTGCTGTGCCGGAAAAAGTTTCAGAAATCGGCGATGTCATCTCCAAATTGACTCTAGAAGAGGCTCGAACCCTTGTTGATTACCTCCAAGAGAAACTTGGCGTTTCCGCTGCCTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGCGACGATGCGGCCGCTGCTGTCGAGGAGAAAACGGAGTTCGATGTTGTTATTGAGGAAGTGCCGAGTAATGCGAGGATTGCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAAGAGCTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGAATTTCGAAGGAAGAGGCGGAAGATGCTAAGAAGCAGCTTGAAGAGGCTGGTGCAAAGATTGCCATAGTTTGA

Protein sequence

MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of HG10019606 vs. NCBI nr
Match: XP_038903222.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 5.9e-84
Identity = 185/191 (96.86%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSSTLSTASLR PSSS +SYPSNFSHSLK TPLNFPFSFSSTNLSLRLVHHRPISAVAVP
Sbjct: 1   MSSTLSTASLRSPSSSLSSYPSNFSHSLKPTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKVSEIGDVIS+LTLEEARTLVDYLQEKLGVSAASFAPA VAVAPGAAAGGDDAAAAVEE
Sbjct: 61  EKVSEIGDVISQLTLEEARTLVDYLQEKLGVSAASFAPAVVAVAPGAAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of HG10019606 vs. NCBI nr
Match: XP_008443526.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053661.1 50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK00831.1 50S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 315.8 bits (808), Expect = 2.5e-82
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLR--FPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVA 60
           MSSTLSTASLR   PSSSS+SYPSNFSHSLK TPL FPFSF+ TNLSLRL+HHRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 192
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of HG10019606 vs. NCBI nr
Match: XP_004141094.1 (50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN59676.1 hypothetical protein Csa_002198 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 3.6e-81
Identity = 178/191 (93.19%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSSTLSTASLR PSSSS+SYPSNFSHSLK TPL FPFSF+ TNLSLRL+HHRPISAVAVP
Sbjct: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPA   VAPG AAGGDDAAAAVEE
Sbjct: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKI+IV
Sbjct: 181 LEEAGAKISIV 191

[Close]

BLAST of HG10019606 vs. NCBI nr
Match: XP_022934872.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 301.6 bits (771), Expect = 4.8e-78
Identity = 175/191 (91.62%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSS LSTASLRFPS SS+SYPSNFSHSL+ST + FPFSFSSTNLSLR VH RP+SA AVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAAAGGDD AAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDD-AAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of HG10019606 vs. NCBI nr
Match: XP_022983181.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 299.7 bits (766), Expect = 1.8e-77
Identity = 174/191 (91.10%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSS LSTASLR PS SS+SYPSNFSHSL+ST + FPFSFSSTNLSLR VH RP+SA AVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAA+GGDD AAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDD-AAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of HG10019606 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.9e-51
Identity = 129/198 (65.15%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRL--VHH------R 60
           M+STLST +LR PS S+ S          ST  + PF   +    +R   +HH      R
Sbjct: 1   MASTLSTITLRSPSPSTAS----------STHASIPFPKKALEFPIRTPKLHHRRATFLR 60

Query: 61  PISAVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGD 120
           P++AV  PEKV ++GD IS LTL +A+ LV+YLQ+KLGV+AASFAPAAVA APGAAA   
Sbjct: 61  PLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA--- 120

Query: 121 DAAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKE 180
           +A A VEEKTEFDVVI+EVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+
Sbjct: 121 EAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKD 180

Query: 181 EAEDAKKQLEEAGAKIAI 191
           EAEDAKKQLEEAGAK++I
Sbjct: 181 EAEDAKKQLEEAGAKVSI 185

[Close]

BLAST of HG10019606 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 3.4e-50
Identity = 124/194 (63.92%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSL---RLVHHRPISAV 60
           M++T + A+L  P  S TS+P++ +      PL FPF  ++  +SL   R    RPI+AV
Sbjct: 1   MAATTTMATLNLP--SLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  AVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAA 120
             PEK+ ++G  +S LTLEEAR LVD+LQ+KLGVSAASFAPAA   APGA A   DAA A
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPA---DAAPA 120

Query: 121 VEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDV I+EVPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKIAIV 192
           KKQLE+AGAK++IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]

BLAST of HG10019606 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-49
Identity = 126/190 (66.32%), Postives = 147/190 (77.37%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           M+STLST +LR P S ST+  ++ S       L FP        + R    RP++AV  P
Sbjct: 1   MASTLSTITLRSP-SPSTATSTHASIPFPKKTLEFPIRTPKLQ-NRRATFLRPLAAVEAP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKV ++GD IS LTL +A+ LV+YLQ+KLGV+AASFAPAAV  APGAAA   +A A VEE
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVI+EVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQ
Sbjct: 121 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQ 180

Query: 181 LEEAGAKIAI 191
           LEEAGAK++I
Sbjct: 181 LEEAGAKVSI 185

[Close]

BLAST of HG10019606 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 122/190 (64.21%), Postives = 142/190 (74.74%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           M+ST  + +    SSS  +  S      K T + FPF  SS++ S R ++ RPISAV  P
Sbjct: 1   MASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVEAP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   AAA VEE
Sbjct: 61  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAVVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           +TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK 
Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180

Query: 181 LEEAGAKIAI 191
           LEEAGAK++I
Sbjct: 181 LEEAGAKVSI 186

[Close]

BLAST of HG10019606 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-45
Identity = 124/195 (63.59%), Postives = 148/195 (75.90%), Query Frame = 0


Query: 2   SSTLSTASLRFPSSSSTSYP--SNFSH-SLKSTPLNFPFSF---SSTNLSLRLVHHRPIS 61
           S+TLS A+    +  S+SYP  ++ +H   ++T + FP  F   SS+ L+ R  H RPI+
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  AVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAA 121
           AV  PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   AA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AA 122

Query: 122 AAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
           A VEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE
Sbjct: 123 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 182

Query: 182 DAKKQLEEAGAKIAI 191
           +AKK LEEAGAK++I
Sbjct: 183 EAKKTLEEAGAKVSI 190

[Close]

BLAST of HG10019606 vs. ExPASy TrEMBL
Match: A0A5A7UJJ4 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00330 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLR--FPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVA 60
           MSSTLSTASLR   PSSSS+SYPSNFSHSLK TPL FPFSF+ TNLSLRL+HHRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 192
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of HG10019606 vs. ExPASy TrEMBL
Match: A0A1S3B8B3 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487096 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLR--FPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVA 60
           MSSTLSTASLR   PSSSS+SYPSNFSHSLK TPL FPFSF+ TNLSLRL+HHRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 192
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of HG10019606 vs. ExPASy TrEMBL
Match: A0A0A0LHZ4 (Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 178/191 (93.19%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSSTLSTASLR PSSSS+SYPSNFSHSLK TPL FPFSF+ TNLSLRL+HHRPISAVAVP
Sbjct: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPA   VAPG AAGGDDAAAAVEE
Sbjct: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKI+IV
Sbjct: 181 LEEAGAKISIV 191

[Close]

BLAST of HG10019606 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.3e-78
Identity = 175/191 (91.62%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSS LSTASLRFPS SS+SYPSNFSHSL+ST + FPFSFSSTNLSLR VH RP+SA AVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAAAGGDD AAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDD-AAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of HG10019606 vs. ExPASy TrEMBL
Match: A0A6J1J1D9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481837 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.9e-78
Identity = 174/191 (91.10%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           MSS LSTASLR PS SS+SYPSNFSHSL+ST + FPFSFSSTNLSLR VH RP+SA AVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAA+GGDD AAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDD-AAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of HG10019606 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-47
Identity = 122/190 (64.21%), Postives = 142/190 (74.74%), Query Frame = 0


Query: 1   MSSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60
           M+ST  + +    SSS  +  S      K T + FPF  SS++ S R ++ RPISAV  P
Sbjct: 1   MASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVEAP 60

Query: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEE 120
           EK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   AAA VEE
Sbjct: 61  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAVVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           +TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK 
Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180

Query: 181 LEEAGAKIAI 191
           LEEAGAK++I
Sbjct: 181 LEEAGAKVSI 186

[Close]

BLAST of HG10019606 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-46
Identity = 124/195 (63.59%), Postives = 148/195 (75.90%), Query Frame = 0


Query: 2   SSTLSTASLRFPSSSSTSYP--SNFSH-SLKSTPLNFPFSF---SSTNLSLRLVHHRPIS 61
           S+TLS A+    +  S+SYP  ++ +H   ++T + FP  F   SS+ L+ R  H RPI+
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  AVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAA 121
           AV  PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   AA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AA 122

Query: 122 AAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
           A VEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE
Sbjct: 123 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 182

Query: 182 DAKKQLEEAGAKIAI 191
           +AKK LEEAGAK++I
Sbjct: 183 EAKKTLEEAGAKVSI 190

[Close]

BLAST of HG10019606 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 161.0 bits (406), Expect = 9.5e-40
Identity = 109/195 (55.90%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 2   SSTLSTASLRFPSSSSTSYPSNFSHSLKSTPLN--FPFSF---SSTNLSLRLVHHRPISA 61
           ++TLS A+    SS S+   S  +H   S PL+  FPFSF   SS+ LS R ++  PISA
Sbjct: 3   ATTLSIATTIRSSSFSSGLAS--AHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISA 62

Query: 62  VAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAA 121
           V  P+K+ +IG  IS LTLEE+R LVDY+Q+K GVS    APAA A+ P    GG  A A
Sbjct: 63  VKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATA 122

Query: 122 AVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
           +VE +T FDVVI +VP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+
Sbjct: 123 SVERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEE 182

Query: 182 AKKQLEEAGAKIAIV 192
            K QLEEAGAK++IV
Sbjct: 183 DKTQLEEAGAKVSIV 193

[Close]

BLAST of HG10019606 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-16
Identity = 68/179 (37.99%), Postives = 101/179 (56.42%), Query Frame = 0


Query: 22  SNFSHSLKSTPLNFPFSFSSTNLSLRLVHHRPISAVAV-PEKVSEIGDVISKLTLEEART 81
           S+FS  LKST         S+++ L  +  R  S+ A   E VS+I + +S LTL E   
Sbjct: 9   SHFSRVLKSTETR------SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMD 68

Query: 82  LVDYLQEKLGVSAASFAPAAVAVAPG---------AAAGGDDAAAAVEEKTEFDVVIEEV 141
           L + L++KL +S     P   A+ PG          +AGG+      E KT FDV+++  
Sbjct: 69  LTEILRQKLNISE---LPVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAY 128

Query: 142 PSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 191
            + ++I VIK VR +T+L LKEAK+L+E  P   K+G+SKEEAE   ++L+  GAK+A+
Sbjct: 129 DAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of HG10019606 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-10
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 52  RPISAVAVPE----KVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGA 111
           R + AVA PE    K+  I D + KL   E          K+G++    A A       A
Sbjct: 27  RHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVAVTGSVGDA 86

Query: 112 AAGGDDAAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKE 171
           +A  +   A   EKT FDV +E+  + ++I VIK +RA T L LKEAK L+E  P   K 
Sbjct: 87  SASTETKTA---EKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKN 146

Query: 172 GISKEEAEDAKKQLEEAGAKIAI 191
           G++KEEAE   ++L+  GA +A+
Sbjct: 147 GLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of HG10019606 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903222.1	5.9e-84	96.86	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
XP_008443526.1	2.5e-82	95.34	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053...	[more]
XP_004141094.1	3.6e-81	93.19	50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN59676.1 hypotheti...	[more]
XP_022934872.1	4.8e-78	91.62	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata]	[more]
XP_022983181.1	1.8e-77	91.10	50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of HG10019606 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24929	8.9e-51	65.15	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P02398	3.4e-50	63.92	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36688	2.9e-49	66.32	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P36212	3.0e-46	64.21	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	1.9e-45	63.59	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of HG10019606 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJJ4	1.2e-82	95.34	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B8B3	1.2e-82	95.34	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LHZ4	1.7e-81	93.19	Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1	[more]
A0A6J1F403	2.3e-78	91.62	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J1D9	8.9e-78	91.10	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of HG10019606 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	2.1e-47	64.21	ribosomal protein L12-C	[more]
AT3G27830.1	1.4e-46	63.59	ribosomal protein L12-A	[more]
AT3G27840.1	9.5e-40	55.90	ribosomal protein L12-B	[more]
AT4G36420.1	2.5e-16	37.99	Ribosomal protein L12 family protein	[more]
AT4G37660.1	3.5e-10	37.06	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 174..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..190
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 62..110 e-value: 3.1E-14 score: 52.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 62..119 e-value: 4.8E-14 score: 54.1
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 62..126
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 120..190 e-value: 1.4E-25 score: 91.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 119..190
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 64..190 e-value: 4.2E-33 score: 112.4
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..190
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 58..191 score: 22.959446
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 61..190 e-value: 3.88542E-40 score: 131.124
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 124..190 e-value: 4.7E-24 score: 84.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019606.1	HG10019606.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome