HG10019604 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019604
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ADP-ribosylation factor
Location	Chr04: 23683388 .. 23683974 (+)
RNA-Seq Expression	HG10019604
Synteny	HG10019604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTGCAGCTACTGTAGCAGTGGGATTAATGGTTGGAGTAGCAGCAGTGGACTGGCCAATGGTAGCTGGTTTCACCTGCAACCATTGGATATTCTGTTCATCTGTTGCCAAGTTGGGGTGAGAAAGGAAGGACAGCCTGGCACTGATATTTTGGAGTGAGAAAAGGAATGATTGATATATGCATTGAGATACGCATTGAGATACAAACCTAGAGAGCCAGGGTAAGGCTTTGTGTAAACAGAACCAACGAAAAGATAGGAGAAACAGTGGGCCCAGTATTTGAAGCCTTTATGTGTACAATTAGTTAATGAACTAGAACATAAAGATCAGTATATGCGTTGCCTAATATTAAACAATAATATTCGTACCGTTCTGTTTTCCTGTATGGCTGTATCATTTTGCATTTTCTTGCATGAGTACAGCCTGATGGGGTGGTATTCTAAATTCTAATCGTTGCAGGATGAGCTTAGAGATGCTGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAGCTTGGTCTTCACTCTCTTCGTCAACGCCACTGGTAA

mRNA sequence

ATGGTTGCTGCAGCTACTGTAGCAGTGGGATTAATGGTTGGAGTAGCAGCAGTGGACTGGCCAATGGATGAGCTTAGAGATGCTGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAGCTTGGTCTTCACTCTCTTCGTCAACGCCACTGGTAA

Coding sequence (CDS)

ATGGTTGCTGCAGCTACTGTAGCAGTGGGATTAATGGTTGGAGTAGCAGCAGTGGACTGGCCAATGGATGAGCTTAGAGATGCTGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAGCTTGGTCTTCACTCTCTTCGTCAACGCCACTGGTAA

Protein sequence

MVAAATVAVGLMVGVAAVDWPMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW

Homology

[Close]

BLAST of HG10019604 vs. NCBI nr
Match: KAE8651256.1 (hypothetical protein Csa_002144 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-16
Identity = 56/97 (57.73%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 4  AATVAVGLMVGVAAVDWPM--------------------------------------DEL 63
          A   AVGLMVGVAAVDWPM                                      DEL
Sbjct: 2  AVVAAVGLMVGVAAVDWPMAAGFICEQWILCAAKLGLERKDGLPGGDIIQFYLYLLQDEL 61

[Close]

BLAST of HG10019604 vs. NCBI nr
Match: XP_020524686.1 (ADP-ribosylation factor 2-like, partial [Amborella trichopoda])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 20 WPMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
          W  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 6  WCQDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 48

[Close]

BLAST of HG10019604 vs. NCBI nr
Match: OAP15945.1 (hypothetical protein AXX17_AT1G53510 [Arabidopsis thaliana])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 21 PMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
          P+DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 23 PLDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 64

[Close]

BLAST of HG10019604 vs. NCBI nr
Match: OVA20730.1 (Small GTPase superfamily [Macleaya cordata])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 13 VGVAAVDWP-MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
          +G+  + W  MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 1  MGLLLLSWEFMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 51

[Close]

BLAST of HG10019604 vs. NCBI nr
Match: THF98357.1 (hypothetical protein TEA_027383 [Camellia sinensis var. sinensis])

HSP 1 Score: 87.4 bits (215), Expect = 4.6e-14
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 7   VAVGLMVGVAAVDWPMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           + + L+   A +D  +DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 48  IVLSLIFRFAVLDPYLDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 103

[Close]

BLAST of HG10019604 vs. ExPASy Swiss-Prot
Match: P36397 (ADP-ribosylation factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. ExPASy Swiss-Prot
Match: P51821 (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii OX=3055 GN=ARF1 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. ExPASy Swiss-Prot
Match: Q06396 (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. ExPASy Swiss-Prot
Match: O48649 (ADP-ribosylation factor 1 OS=Salix bakko OX=72444 GN=ARF1 PE=2 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. ExPASy Swiss-Prot
Match: P51824 (ADP-ribosylation factor 1 OS=Solanum tuberosum OX=4113 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. ExPASy TrEMBL
Match: A0A0E0N3Z4 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-15
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 19  DWPMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           +W  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 116 NWKKDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 159

[Close]

BLAST of HG10019604 vs. ExPASy TrEMBL
Match: A0A178WEN8 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g53510 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 21 PMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
          P+DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 23 PLDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 64

[Close]

BLAST of HG10019604 vs. ExPASy TrEMBL
Match: A0A200RDE8 (Small GTPase superfamily OS=Macleaya cordata OX=56857 GN=BVC80_887g10 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 13 VGVAAVDWP-MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
          +G+  + W  MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 1  MGLLLLSWEFMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 51

[Close]

BLAST of HG10019604 vs. ExPASy TrEMBL
Match: A0A4S4D7L4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_027383 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 7   VAVGLMVGVAAVDWPMDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           + + L+   A +D  +DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 48  IVLSLIFRFAVLDPYLDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 103

[Close]

BLAST of HG10019604 vs. ExPASy TrEMBL
Match: A0A151U4P9 (ADP-ribosylation factor 2 OS=Cajanus cajan OX=3821 GN=KK1_006932 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 22  MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 140 MDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 180

[Close]

BLAST of HG10019604 vs. TAIR 10
Match: AT1G70490.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. TAIR 10
Match: AT1G23490.1 (ADP-ribosylation factor 1 )

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. TAIR 10
Match: AT1G10630.1 (ADP-ribosylation factor A1F )

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. TAIR 10
Match: AT1G70490.3 (Ras-related small GTP-binding family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

[Close]

BLAST of HG10019604 vs. TAIR 10
Match: AT1G70490.2 (Ras-related small GTP-binding family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 23  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 63
           DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153

The following BLAST results are available for this feature:

BLAST of HG10019604 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651256.1	2.2e-16	57.73	hypothetical protein Csa_002144 [Cucumis sativus]	[more]
XP_020524686.1	2.1e-14	95.35	ADP-ribosylation factor 2-like, partial [Amborella trichopoda]	[more]
OAP15945.1	2.1e-14	97.62	hypothetical protein AXX17_AT1G53510 [Arabidopsis thaliana]	[more]
OVA20730.1	2.7e-14	84.31	Small GTPase superfamily [Macleaya cordata]	[more]
THF98357.1	4.6e-14	76.79	hypothetical protein TEA_027383 [Camellia sinensis var. sinensis]	[more]

BLAST of HG10019604 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36397	3.0e-16	100.00	ADP-ribosylation factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2	[more]
P51821	3.0e-16	100.00	ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii OX=3055 GN=ARF1 PE=2 SV=2	[more]
Q06396	3.0e-16	100.00	ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g08134...	[more]
O48649	3.0e-16	100.00	ADP-ribosylation factor 1 OS=Salix bakko OX=72444 GN=ARF1 PE=2 SV=3	[more]
P51824	3.0e-16	100.00	ADP-ribosylation factor 1 OS=Solanum tuberosum OX=4113 PE=2 SV=2	[more]

BLAST of HG10019604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0N3Z4	5.9e-15	93.18	Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1	[more]
A0A178WEN8	1.0e-14	97.62	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g53510 PE=4 ...	[more]
A0A200RDE8	1.3e-14	84.31	Small GTPase superfamily OS=Macleaya cordata OX=56857 GN=BVC80_887g10 PE=4 SV=1	[more]
A0A4S4D7L4	2.2e-14	76.79	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0273...	[more]
A0A151U4P9	2.9e-14	100.00	ADP-ribosylation factor 2 OS=Cajanus cajan OX=3821 GN=KK1_006932 PE=3 SV=1	[more]

BLAST of HG10019604 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70490.1	2.1e-17	100.00	Ras-related small GTP-binding family protein	[more]
AT1G23490.1	2.1e-17	100.00	ADP-ribosylation factor 1	[more]
AT1G10630.1	2.1e-17	100.00	ADP-ribosylation factor A1F	[more]
AT1G70490.3	2.1e-17	100.00	Ras-related small GTP-binding family protein	[more]
AT1G70490.2	2.1e-17	100.00	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 22..62 e-value: 1.6E-10 score: 40.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 18..62 e-value: 7.0E-13 score: 50.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 23..62
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 22..62
None	No IPR available	PANTHER	PTHR11711:SF392	ADP-RIBOSYLATION FACTOR 1	coord: 22..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019604.1	HG10019604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding