HG10019557 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019557
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGAST1 protein-like protein 5
LocationChr04: 23148471 .. 23149362 (-)
RNA-Seq ExpressionHG10019557
SyntenyHG10019557
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGGTAAAAACTAATAAAAGGATTGTTTTTTTTTATGTTTTAAGGGTAAAATATTGATTTACTGCCATGTTTGGTAACGGTTAGGTTTTTATTGGTTTTTAGTTTTTGAAAGTTTTAGTTTACAAACACTTTTTCCAGCTCTAAAATTCTGTTTACTATTTGGCTTTTGGTGAAGATTAAGTCTATTTTCCTCTCAAGTTCTTACGATGCATGGTTTGTATCTTTTTACTTAAAAGAGTTGAATTCTTAACCAAATTTCAAAAATAAACACAACTTTTTTTTAGTTTTCAAAACTTGGCTTGCAGGTTTTTAAAAATATTGGTAAAAAGTAGAGAACAAAGTTTATAGGCTTAATTTTCAAAAACTAAAAACCAAAAAAAACAAATGACTACCAAAGAGAGTTTGCATTTCTTTCTTTATTATCTATCTTTTTACCAATATTTTCAAAAACCAAGGTACATTTTGAAAATCAAAAGTTGCTTTTGTTTTTAGAATTGCGCTAAGATCAGTTCACCTCTCTTAGGTAAGAAAAAAGATGTGAACCATTATAAGAAATTGAGAGAAAATAAGTAGGCTTAATTTTCATAAAAAATAAATTAAATAATTACTCAATGGGATATTGGTGATTAATTGGTTTTAACTGAGTTGAGGGGGTTTGCAGAATGTGGAGGTAGATGCAAAGAGAGATGCTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGCTGTGCCAAATGCTTGTGTGTGCCTTATGGAACTTATGGCAACAAGCAATCTTGTCCTTGTTACAATGAATGGAAGACTAAAAGAGGAGGCCCAAAATGCCCTTGAATTTCAACCTTTGTGTTGA

mRNA sequence

ATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGAATGTGGAGGTAGATGCAAAGAGAGATGCTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGCTGTGCCAAATGCTTGTGTGTGCCTTATGGAACTTATGGCAACAAGCAATCTTGTCCTTGTTACAATGAATGGAAGACTAAAAGAGGAGGCCCAAAATGCCCTTGAATTTCAACCTTTGTGTTGA

Coding sequence (CDS)

ATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGAATGTGGAGGTAGATGCAAAGAGAGATGCTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGCTGTGCCAAATGCTTGTGTGTGCCTTATGGAACTTATGGCAACAAGCAATCTTGTCCTTGTTACAATGAATGGAAGACTAAAAGAGGAGGCCCAAAATGCCCTTGAATTTCAACCTTTGTGTTGA

Protein sequence

MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMNGRLKEEAQNALEFQPLC
Homology
BLAST of HG10019557 vs. NCBI nr
Match: KAA0057216.1 (GAST1 protein-like protein 5 [Cucumis melo var. makuwa] >TYK18745.1 GAST1 protein-like protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMN 60
          ME LKAAFNLKNV +DA+ D QRQHSRSHACSFVKS VPNACV LM LMAT+ LVL T+N
Sbjct: 1  MELLKAAFNLKNVGLDAQGDVQRQHSRSHACSFVKSVVPNACVFLMGLMATNKLVLATIN 60

Query: 61 GRLKEEAQNALE 73
          GRL+EEA NAL+
Sbjct: 61 GRLREEAPNALD 72

BLAST of HG10019557 vs. NCBI nr
Match: GAY48987.1 (hypothetical protein CUMW_115810 [Citrus unshiu])

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 5  KAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMNGRLK 64
          K  FNLK+ + DA++DAQR ++ SHACS VKSAVP+ACVCL++ M TSN  L T+ G+L+
Sbjct: 30 KEVFNLKSADHDARQDAQRHNTGSHACSSVKSAVPSACVCLLDFMETSNPALATITGKLR 89

Query: 65 EEAQNALE 73
          EE +NALE
Sbjct: 90 EEDRNALE 97

BLAST of HG10019557 vs. NCBI nr
Match: KAF5474215.1 (hypothetical protein F2P56_006130 [Juglans regia])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1  MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMN 60
          M S KAAFN KNV   A +DAQ+Q SRSHACS VKSAVP+ACV L+ELM T N  L T  
Sbjct: 21 MVSPKAAFNHKNVVHVAHKDAQKQRSRSHACSSVKSAVPSACVSLLELMGTRNSALATTI 80

Query: 61 GRLKEEAQNALE 73
          GR +EE  NAL+
Sbjct: 81 GRPREEDPNALD 92

BLAST of HG10019557 vs. NCBI nr
Match: GAV69370.1 (hypothetical protein CFOL_v3_12871 [Cephalotus follicularis])

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-11
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 8   FNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMNGRLKEEA 67
           F+  +V+ DA  D Q  ++RSHACSF KSAVP+ACVCL ELMATS   L TM GR +EE 
Sbjct: 92  FDPGSVDQDALEDVQIHNTRSHACSFAKSAVPSACVCLQELMATSKFALATMTGRPREED 151

Query: 68  QNALE 73
            NAL+
Sbjct: 152 PNALD 156

BLAST of HG10019557 vs. NCBI nr
Match: AFK39988.1 (unknown [Medicago truncatula])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 1  MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMN 60
          M SLKA FN KNV+ DA  DAQ  ++RSHA SF  S VP+ CVCL+ +MATS   L T  
Sbjct: 28 MASLKAVFNHKNVDHDALIDAQTHNTRSHAYSFATSVVPSVCVCLLAIMATSRFALATTT 87

Query: 61 GRLKEEAQNALE 73
          GR K E  NAL+
Sbjct: 88 GRPKGEDPNALK 99

BLAST of HG10019557 vs. ExPASy TrEMBL
Match: A0A5A7USS3 (GAST1 protein-like protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00480 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.9e-21
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMN 60
          ME LKAAFNLKNV +DA+ D QRQHSRSHACSFVKS VPNACV LM LMAT+ LVL T+N
Sbjct: 1  MELLKAAFNLKNVGLDAQGDVQRQHSRSHACSFVKSVVPNACVFLMGLMATNKLVLATIN 60

Query: 61 GRLKEEAQNALE 73
          GRL+EEA NAL+
Sbjct: 61 GRLREEAPNALD 72

BLAST of HG10019557 vs. ExPASy TrEMBL
Match: A0A2H5P9F1 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_115810 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 5  KAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMNGRLK 64
          K  FNLK+ + DA++DAQR ++ SHACS VKSAVP+ACVCL++ M TSN  L T+ G+L+
Sbjct: 30 KEVFNLKSADHDARQDAQRHNTGSHACSSVKSAVPSACVCLLDFMETSNPALATITGKLR 89

Query: 65 EEAQNALE 73
          EE +NALE
Sbjct: 90 EEDRNALE 97

BLAST of HG10019557 vs. ExPASy TrEMBL
Match: A0A2N9IL55 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54258 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.9e-12
Identity = 45/72 (62.50%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1  MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMN 60
          M S KAAFNLK+V   A +DAQ+Q SRSHACS  KS V NACV L ELM T N  L T+ 
Sbjct: 1  MVSPKAAFNLKSVLHAAPKDAQKQRSRSHACSSAKSVVLNACVFLRELMGTRNSALATIT 60

Query: 61 GRLKEEAQNALE 73
          GR +EE  NALE
Sbjct: 61 GRPREEDPNALE 72

BLAST of HG10019557 vs. ExPASy TrEMBL
Match: A0A1Q3BMX3 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12871 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 8   FNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMNGRLKEEA 67
           F+  +V+ DA  D Q  ++RSHACSF KSAVP+ACVCL ELMATS   L TM GR +EE 
Sbjct: 92  FDPGSVDQDALEDVQIHNTRSHACSFAKSAVPSACVCLQELMATSKFALATMTGRPREED 151

Query: 68  QNALE 73
            NAL+
Sbjct: 152 PNALD 156

BLAST of HG10019557 vs. ExPASy TrEMBL
Match: A0A371H337 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_20044 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.4e-11
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 1  MESLKAAFNLKNVEVDAKRDAQRQHSRSHACSFVKSAVPNACVCLMELMATSNLVLVTMN 60
          M S KA FN KNV   A+ DAQ  ++R+ ACS  KSAVP+ACVCL+ELMATS   L T N
Sbjct: 5  MASRKAVFNHKNVGHVAQLDAQTHNTRNPACSSAKSAVPSACVCLLELMATSRFALATTN 64

Query: 61 GRLKEEAQNALE 73
          GR K E  NA E
Sbjct: 65 GRPKGEDPNAPE 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0057216.11.8e-2077.78GAST1 protein-like protein 5 [Cucumis melo var. makuwa] >TYK18745.1 GAST1 protei... [more]
GAY48987.12.9e-1360.29hypothetical protein CUMW_115810 [Citrus unshiu][more]
KAF5474215.13.2e-1263.89hypothetical protein F2P56_006130 [Juglans regia][more]
GAV69370.17.8e-1160.00hypothetical protein CFOL_v3_12871 [Cephalotus follicularis][more]
AFK39988.11.7e-1056.94unknown [Medicago truncatula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7USS38.9e-2177.78GAST1 protein-like protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A2H5P9F11.4e-1360.29Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_115810 PE=4 SV=1[more]
A0A2N9IL559.9e-1262.50Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54258 PE=4 SV=1[more]
A0A1Q3BMX33.8e-1160.00Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12871 PE=4... [more]
A0A371H3378.4e-1159.72Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_20044 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019557.1HG10019557.1mRNA