HG10019553 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019553
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	double-stranded RNA-binding protein 1 isoform X2
Location	Chr04: 23109299 .. 23109682 (-)
RNA-Seq Expression	HG10019553
Synteny	HG10019553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGTAAATCTTACCAATTACCTGAATATTCCGTTGTTAAACAAGGTCAAGACCACGATCCACGCTTTGAAGCCACAGTCACCGTCGACGGCAAACAATTCCGCTCACCGCTTCCTTCTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCACCGCAACCGCCGCCGCAGCTGGAGCAATTCTGCCCTCAACCAATTTTGCCAGAATCATCTCCTCCGCTGAAACTAATTCCTTGCATTCCCCCATTTCCTCACCCGTCTCTAAATTTATCTTCTTTTCCTCAGCCCTCCTTGCCTTCGCAATTGGGTATGACTTAA

mRNA sequence

ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGTAAATCTTACCAATTACCTGAATATTCCGTTGTTAAACAAGGTCAAGACCACGATCCACGCTTTGAAGCCACAGTCACCGTCGACGGCAAACAATTCCGCTCACCGCTTCCTTCTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCACCGCAACCGCCGCCGCAGCTGGAGCAATTCTGCCCTCAACCAATTTTGCCAGAATCATCTCCTCCGCTGAAACTAATTCCTTGCATTCCCCCATTTCCTCACCCGTCTCTAAATTTATCTTCTTTTCCTCAGCCCTCCTTGCCTTCGCAATTGGGTATGACTTAA

Coding sequence (CDS)

ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCATCGTAAATCTTACCAATTACCTGAATATTCCGTTGTTAAACAAGGTCAAGACCACGATCCACGCTTTGAAGCCACAGTCACCGTCGACGGCAAACAATTCCGCTCACCGCTTCCTTCTAAGTCTTCCAAGCAAGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTCACCGCAACCGCCGCCGCAGCTGGAGCAATTCTGCCCTCAACCAATTTTGCCAGAATCATCTCCTCCGCTGAAACTAATTCCTTGCATTCCCCCATTTCCTCACCCGTCTCTAAATTTATCTTCTTTTCCTCAGCCCTCCTTGCCTTCGCAATTGGGTATGACTTAA

Protein sequence

MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDAAKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSLPSQLGMT

Homology

[Close]

BLAST of HG10019553 vs. NCBI nr
Match: XP_038904852.1 (double-stranded RNA-binding protein 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 210.3 bits (534), Expect = 9.7e-51
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKT+LQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQF S +P KSSKQAQN+A
Sbjct: 1   MFKTQLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFSSLVPCKSSKQAQNEA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AK+AFDFFSLPSSPQPP Q +  CPQP+LPESSPP KLIPCIPPF H SL++SSFPQP+L
Sbjct: 61  AKIAFDFFSLPSSPQPPLQPDHSCPQPLLPESSPPPKLIPCIPPFSHSSLDVSSFPQPTL 120

Query: 121 PSQLG 126
           PS LG
Sbjct: 121 PSHLG 125

[Close]

BLAST of HG10019553 vs. NCBI nr
Match: XP_038904854.1 (double-stranded RNA-binding protein 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 210.3 bits (534), Expect = 9.7e-51
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKT+LQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQF S +P KSSKQAQN+A
Sbjct: 1   MFKTQLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFSSLVPCKSSKQAQNEA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AK+AFDFFSLPSSPQPP Q +  CPQP+LPESSPP KLIPCIPPF H SL++SSFPQP+L
Sbjct: 61  AKIAFDFFSLPSSPQPPLQPDHSCPQPLLPESSPPPKLIPCIPPFSHSSLDVSSFPQPTL 120

Query: 121 PSQLG 126
           PS LG
Sbjct: 121 PSHLG 125

[Close]

BLAST of HG10019553 vs. NCBI nr
Match: XP_004141127.1 (double-stranded RNA-binding protein 1 [Cucumis sativus] >KAE8651270.1 hypothetical protein Csa_001302 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 8.2e-50
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF SP PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQPP   EQ CPQP+LP+SS P KLIP IPPFP PSLNLSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPP---EQLCPQPLLPQSSSPPKLIPSIPPFP-PSLNLSSFPQPSL 120

Query: 121 PSQLG 126
            SQLG
Sbjct: 121 TSQLG 121

[Close]

BLAST of HG10019553 vs. NCBI nr
Match: XP_008464954.1 (PREDICTED: double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSSTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP I PF  PSL+LSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPSQQL---CPQPVLPESSSPPKLIPSILPFSPPSLDLSSFPQPSL 120

Query: 121 PSQLG 126
           PSQLG
Sbjct: 121 PSQLG 122

[Close]

BLAST of HG10019553 vs. NCBI nr
Match: KAA0057205.1 (double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo var. makuwa] >TYK18757.1 double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSSTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP I PF  PSL+LSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPSQQL---CPQPVLPESSSPPKLIPSILPFSPPSLDLSSFPQPSL 120

Query: 121 PSQLG 126
           PSQLG
Sbjct: 121 PSQLG 122

[Close]

BLAST of HG10019553 vs. ExPASy Swiss-Prot
Match: Q5N8Z0 (Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-11
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPL-PSKSSKQAQND 60
          M+K++LQELC ++ +  PEY+    G  H P F ATV+V+G +FR+P   ++S+K+A N 
Sbjct: 1  MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 61 AAKLAFDFF-SLPSSPQPPPQLEQ 83
          AAK AFD   SLP  P PPP   Q
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQ 84

[Close]

BLAST of HG10019553 vs. ExPASy Swiss-Prot
Match: Q9SKN2 (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+ +++G DH PRF+ATV  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61 AKLAFDFFS 70
          A++A +  S
Sbjct: 61 AEVALNALS 69

[Close]

BLAST of HG10019553 vs. ExPASy Swiss-Prot
Match: B7E321 (Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB5 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y   ++G DH PRF+ATVT +G+ F  P    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60

Query: 61 AKLAFDFFSL--PSS 74
          A++A    SL  PSS
Sbjct: 61 AEVALARLSLRGPSS 75

[Close]

BLAST of HG10019553 vs. ExPASy Swiss-Prot
Match: Q9LJF5 (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-09
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61 AKLAFDFFS 70
          A++A    S
Sbjct: 61 AEVALSALS 69

[Close]

BLAST of HG10019553 vs. ExPASy Swiss-Prot
Match: Q8GY79 (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-09
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+ +++G DH PRF+A+V  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61 AKLAFDFFS 70
          A+++ +  S
Sbjct: 61 AEVSLNVLS 69

[Close]

BLAST of HG10019553 vs. ExPASy TrEMBL
Match: A0A0A0LI49 (DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G842040 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 109/124 (87.90%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF SP PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQPP   EQ CPQP+LP+SS P KLIP IPPFP PSLNLSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPP---EQLCPQPLLPQSSSPPKLIPSIPPFP-PSLNLSSFPQPSL 120

Query: 121 PSQL 125
            SQL
Sbjct: 121 TSQL 120

[Close]

BLAST of HG10019553 vs. ExPASy TrEMBL
Match: A0A5A7UUH6 (Double-stranded RNA-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00600 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.3e-48
Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSSTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP I PF  PSL+LSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPSQQL---CPQPVLPESSSPPKLIPSILPFSPPSLDLSSFPQPSL 120

Query: 121 PSQLG 126
           PSQLG
Sbjct: 121 PSQLG 122

[Close]

BLAST of HG10019553 vs. ExPASy TrEMBL
Match: A0A1S3CMT3 (double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502699 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.3e-48
Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSSTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP I PF  PSL+LSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPSQQL---CPQPVLPESSSPPKLIPSILPFSPPSLDLSSFPQPSL 120

Query: 121 PSQLG 126
           PSQLG
Sbjct: 121 PSQLG 122

[Close]

BLAST of HG10019553 vs. ExPASy TrEMBL
Match: A0A1S3CMN7 (double-stranded RNA-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502699 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.3e-48
Identity = 107/125 (85.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  PSKSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSSTPSKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPS PQP  QL   CPQP+LPESS P KLIP I PF  PSL+LSSFPQPSL
Sbjct: 61  AKLAFDFFSLPSLPQPSQQL---CPQPVLPESSSPPKLIPSILPFSPPSLDLSSFPQPSL 120

Query: 121 PSQLG 126
           PSQLG
Sbjct: 121 PSQLG 122

[Close]

BLAST of HG10019553 vs. ExPASy TrEMBL
Match: A0A6J1EVN0 (double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111436989 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 95/123 (77.24%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 1   MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
           MFKTKLQELCHRKSY+LP YSVVKQGQDHDPRFEATVTV G +F S  P KSSKQAQNDA
Sbjct: 1   MFKTKLQELCHRKSYELPVYSVVKQGQDHDPRFEATVTVAGNKFCSQTPCKSSKQAQNDA 60

Query: 61  AKLAFDFFSLPSSPQPPPQLEQFCPQPILPESSPPLKLIPCIPPFPHPSLNLSSFPQPSL 120
           AKLAFDFFSLPSS    P+LE F PQP  PESSPPL+ +   P F HPSL++SSFPQPSL
Sbjct: 61  AKLAFDFFSLPSS----PKLEPFHPQPSFPESSPPLEQLRYSPQFSHPSLHISSFPQPSL 119

Query: 121 PSQ 124
           PSQ
Sbjct: 121 PSQ 119

[Close]

BLAST of HG10019553 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+ +++G DH PRF+ATV  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61 AKLAFDFFS 70
          A++A +  S
Sbjct: 61 AEVALNALS 69

[Close]

BLAST of HG10019553 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61 AKLAFDFFS 70
          A++A    S
Sbjct: 61 AEVALSALS 69

[Close]

BLAST of HG10019553 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61 AKLAFDFFS 70
          A++A    S
Sbjct: 61 AEVALSALS 69

[Close]

BLAST of HG10019553 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MFKTKLQELCHRKSYQLPEYSVVKQGQDHDPRFEATVTVDGKQFRSPLPSKSSKQAQNDA 60
          M+K +LQEL  R  + LP Y+ +++G DH PRF+A+V  +G+ F SP    + +QA++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61 AKLAFDFFS 70
          A+++ +  S
Sbjct: 61 AEVSLNVLS 69

The following BLAST results are available for this feature:

BLAST of HG10019553 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904852.1	9.7e-51	84.00	double-stranded RNA-binding protein 1-like isoform X1 [Benincasa hispida]	[more]
XP_038904854.1	9.7e-51	84.00	double-stranded RNA-binding protein 1-like isoform X2 [Benincasa hispida]	[more]
XP_004141127.1	8.2e-50	88.00	double-stranded RNA-binding protein 1 [Cucumis sativus] >KAE8651270.1 hypothetic...	[more]
XP_008464954.1	1.7e-47	85.60	PREDICTED: double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo]	[more]
KAA0057205.1	1.7e-47	85.60	double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of HG10019553 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5N8Z0	6.0e-11	47.62	Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9SKN2	1.5e-09	42.03	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE...	[more]
B7E321	7.3e-09	44.00	Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9LJF5	9.6e-09	40.58	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE...	[more]
Q8GY79	9.6e-09	39.13	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE...	[more]

BLAST of HG10019553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI49	2.0e-49	87.90	DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G842040 PE=4 S...	[more]
A0A5A7UUH6	8.3e-48	85.60	Double-stranded RNA-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CMT3	8.3e-48	85.60	double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3CMN7	8.3e-48	85.60	double-stranded RNA-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1EVN0	2.6e-41	77.24	double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of HG10019553 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28380.1	1.0e-10	42.03	dsRNA-binding protein 2	[more]
AT3G26932.1	6.8e-10	40.58	dsRNA-binding protein 3	[more]
AT3G26932.2	6.8e-10	40.58	dsRNA-binding protein 3	[more]
AT5G41070.1	6.8e-10	39.13	dsRNA-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 2..69 e-value: 1.6E-13 score: 61.0
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 3..65 e-value: 1.3E-15 score: 57.8
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 1..70 score: 13.616169
None	No IPR available	GENE3D	3.30.160.20		coord: 1..69 e-value: 5.0E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..88
None	No IPR available	PANTHER	PTHR46031:SF16	DOUBLE-STRANDED RNA-BINDING PROTEIN 4	coord: 1..80
None	No IPR available	PANTHER	PTHR46031	FAMILY NOT NAMED	coord: 1..80
None	No IPR available	CDD	cd10845	DSRM_RNAse_III_family	coord: 2..68 e-value: 4.16759E-17 score: 68.2879
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 2..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019553.1	HG10019553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003725	double-stranded RNA binding