HG10019481 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019481
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ABC transporter C family member 13 isoform X5
Location	Chr04: 22270317 .. 22274973 (+)
RNA-Seq Expression	HG10019481
Synteny	HG10019481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGGAGGGGACAGGGCTCATATTGGAGAAAGAGGGGTCAACTTATCTGGGGGCCAGAGAGCCCGATTAGCCATGGCAAGGTTATGGCATCTTCATGTGCTCCAATTTAAATTTTATCTGTAATAAAGTGACTTGTTTTTTATTATTATAAAACGTCATTTACACCTTTGCAACTCACAGGGCTCTTTATCATGGATTGGATATTCTTATGCTTGATGATGTTCTTAGTGCAGTGGATGCACAAGTTGCAGATTGGATATTGCGTAATGCCATTTTGGGTCCTTTGGCACAGAAAAAAACACGCATACTTAGTACCCATAATCATCAGGTTGTTCCCTTAACTGTTCACTGTTTACTTGAAAACCAGCTCATATAATTCTTTTTGAAGTAAATGAAATACTTATTTCAAATGTTGCTGGCATAGAACCACAGAGGTTGTATAATTTCATTATAAAAGTTTGCTATAACCATTTGAAAATTTTAATTTGGAATGTCTAGAACGCAAGACATTCTTAGGATTGCACATCAACACATACTAAATCTTCTTTCTAGATTAAATCAGGATCTTTTTCCCCATCTTCCACAGGCAATATATTCTGCTGATATGGTTATTGTGATGGATAAAGGAAAGGTAAAGTGGATTGGAAATCCAACCAACTTGTCGGGCTCATCTTATGTTGCATTTACCCTGTCGAATGAACTTGATACTACCCAATGTATTCAAGGACAAGACTGCCAAGTAATTGAGAGAACTGAAACTCATAAACATTTCCTTGATGAGAAAGAGGACACGAATGCTCCAAATGGAATAACTGAGACTGTTGATGATGAGATGCGGAAAGAGGGCAGAGTTCAACTCAGTGTATACAAGTAAGCATTCACAGCATATTCAACTTCAATGAACAGTGAGCAATTCTGAAAGCTGTTTTTTAGGATAACTTTTTTATTAATGATTAATTAATTATTGTCAGTACTCAGTAGTTTCTGAAATATTTGGTGGCAACAATTCCAGGAACTATGCAGCATTTTGTGGTTGGTTCATTGCAATCATTATTTGCATTTCTGCATTTTTAATGCAAGCTTCACGCAATGGGAATGATCTTTGGCTTTCTTTTTGGGTCGATACTACCGGAAGAAGTCAGATGGACAGTTCAACAACCTTTTACCTAGTAATCAGCACTTATATTTTTCTGTTCTGTTACTGCTCATACATCACCTATGTTTTTTCTAAAAAGAAACCAGACTTTTCATTGATTAAATGAAAAGAGACTAGCACTCAAAATACAATGAAACAAGATGAAAGAAAACATAGCAATTACAACCATTGTGGCCAAGTACATCACCTTATGTGGTTGGCATAGATTATATATTTTGATTTGATCAAATAATATTCTAATGTAGAATAGTTGTTAATTACTGAAATTGAAGAAATCTCAAGCTGTAGTTCCTCCCACGATTGATATAAGGGCGCATTTACTCTCTTGTAAACGTAGTCAGGGAATGGGAATCCATAATTGTGGGATGACCAAAACTTGTAGTTAGAATTAATTGTGAGTCCCACCATTTTTTATTACGCCAAACTCTTAAATTCAATTCCCCCAAAATAGGTGGTATTTTGATTACGTGGGACCCACCCTATTTTTTGTGTTCACTTTACACGATTTGCCCCTTTCTCTCTCATAAGTATTTTTTGTTTCTCTCTAATTGGCTTCCCCTCCTCTCGCTCTAGCTTTTTTTCCCCTCTTCTCTTGCTCTTTCCCTCTTTTCCTTTAGCTCTGCTTTTCCCTCTTCCTCTCATTCTAGTTTTGTAGCCCCCTCATTTTGGCTTGTCCCTCTTCCTCTCGTTCTGGCTTTTCCTTTTTCCTCTCCTTCTCTGTTTTCCAAATCATCTCCACCAAATTACACTTAGAATTCCACAAAATAAAATTAGAGGAAAAAAAACTAAAAATACCTTAGAGGAAGAAAAGCTCTGTGCTGGAGTATCTTGGCCAGCAAAACCAGCTCTCGCTTTGGTTCAAGATTGCAGAACGAAATCACTGTTATTTTTTAAACCAAAAAGCTTATATTATTCATTATATAGATTTTATAAAATTAAAAAAATTGTTTATATATATATATATAGTCATCTAAAAAAATCTCTATTAGAAATATTCATATTGAGATTATTTTTTAAAAAAATAAATCTACAACTTAATTTAAATTTGAATTAGATTAATGAAATCCATTGGAAATATATAAAGGCATTATGGTAATCATTCAAATTTCATTCCCATTACAGATGAAAGTAAACACCACCAAAAGTTATATGATTACCATTCCAACCAATTCCCTTTACAACTCAATCCAACAACGATTGCACCCTAAATCCCAGACGGATAGGTAGATGCACCCTAAGACTTTCTAATTAGCTACTCGGGCTTTCACTTTACTAAACCAACCACCAGAATCAGTTATTTAGTTTTAGGGACTGTTGTACCCTTCAGCTAATGGTTGGTTCTAATAACTGTTAGTTTGTTAAGGTTGATTACCATTATTATTATTATTATTTTTAAACAAGAAACAAGCTTTTCATTGTTATAATGGAAAGAGACTAGTATTCCGAAGATACAAACTCCGAAACAGAGTGAAATAAGCAAAAACATAAAAACATATTAAAAAACTAAATATACATAATTAATCATGATAGATAAAGGCGCTCTAATTTAGGCAAACATCTTGAATAGAAAGCCCCCAAATAATTTGGAAAGAGAGCACCAAGTAGACGCTTTCAAGCGAGCCAAGTCGAAGCATAGAAAACCGGTGAGAGACTTGTCATGGAAGATGTGTTGTTTTCTTTCAAACCATAATTCTAAAAGAATTGCTTTAATAGCATTTATCCGGATCAGTCTGGCTCTGGAATGTAGTAAGGGAACCACCAAACAATACTGAAATATTACCAGTATGAGACACTTGTAGAATACCAAAGGAGAATTGAAGATTGCAAACAAATGAGCCCAAATCTGTGCAGCATGGGGACAATTGAAGGTATGAAGAAGAGTTTCCTCAGCCGAATAACAAAATGGCATGAGACACTTTGTGGGATTCTTCTTTTGCAAAACCTCTAAGGTATTAAGATTGCCATTCAACATTATCCAAATCAAAATACTAATCCTTTCAGGGCTTTTAAACTTCCAGAGAGTCGAGACTTCCACCTTATCCAATATCCATTGGTTACGAAGACACCAAATGCTTGGTTAAAGATTTTACTGAAAGAATACTTGAAGGTTCAAAGAACAAACTCGTCGATCATCACTAAGACCAAACAAGACAGTGGATATGGTAGATAATGAAGACTGAAAGTTAAATACTTTTCTTTCTTCAAAGATCTTGTAAAGAAAATTTTGAAGCACCTATTTGGCCGTCCCAATGATCTAAAACAGTCCCATTATGAGATAAGCAAACAAGAAACAGCCTGGGAAAGGAAGATTGTAAAGAAGAGTTGCCGAACCAAATATCCTTCTAAAATACAACCCAATACAACACTTTCTAATGATAATCAAAACGTACAAACAAAAAAGCAACCAAGTCTTCCAGAACATGCTGGATAGAGTGTTTTAAAAAGCTCTCCTGGTTGCGCACCTAGGCTCAAGGCGCAGGTCTGGCGCCTTGCCTTGAAAAGACACGCCTCATGCACGCGCCTTTTGTGAAGCCCAAGCCTCAAAGTCCTGCACCTGAGGGATTTTCTCATTATTTTTAAAAACTAGTAATAATTAGGGGTTTTCCTTCTTTATTAACCAAAAAAATCAAATTTACTCTAAGCTTAAATGCAAAATTTCTTGTGTTTAGGGGTCTTTTTTTTCATATTTCCACTTCAACTATGTTTTCTCTTCTTAATGTAGTACTTTTATATATAGTGTCCCTCACAAAAAGAGGCCCACACCTTTTTTTGCGCCTTGCACTTAAGCCCTAGAAGAATATTGCGCTTTATTATTGCGCCTTGAGCTTTATAAAACACTGTTGGATACCAAGGAAAGGATACCAAATAAAATAGTTATATGAAGGAGAAATATTATATAAATATTTGGAATGTCACACAAACTCACATTTAAAATACGACTAACATGTAAGTTGATTAGAGTGTATGGTCATATTTCTAAGTTTACTGGAAATATCTTATTGTAGGAGAGCATGAAAGTTTGCTGACTCAACATTTTCATTTTTTGAAGCTCTTAATATTAAGGTGTGCCTTTGACATATCTTCTTTCATTTTGATACCATACAAATTTTTGCAGGTTACCCTCTGCATCTTTTGCATCATAAATTCATTCTTTACTTTGCTGAGAGCATTCTCATTTGCATTTGGTGGCTTACAAGCTGCAGTTAAGGTGCATGATACATTATTGAATAAGCTTATTCATGCACCTATCCAGTTTTTTTATCAAACACCTGGTGGGCGAATCCTGAATAGGTTAGTTGAGGACAATGAGAAACATAGAACTCCTTCCTTCTCCCCATGCCTTGCATAATTGTTTCTTATTGCAGGTTGTCTTCTGATCTCTATACCATTGACGATTCTCTTCCATTCATCCTCAACATCCTCCTGGCAAATTTTGTTGGCTTGTTGGGAATTGCAGTAGTCCTGTCATATGTACAGGTGCCTTTCAAATTTGTTTAG

mRNA sequence

ATGCCTGGAGGGGACAGGGCTCATATTGGAGAAAGAGGGGTCAACTTATCTGGGGGCCAGAGAGCCCGATTAGCCATGGCAAGATTAAATCAGGATCTTTTTCCCCATCTTCCACAGGCAATATATTCTGCTGATATGGTTATTGTGATGGATAAAGGAAAGGTAAAGTGGATTGGAAATCCAACCAACTTGTCGGGCTCATCTTATGTTGCATTTACCCTGTCGAATGAACTTGATACTACCCAATGTATTCAAGGACAAGACTGCCAAGTAATTGAGAGAACTGAAACTCATAAACATTTCCTTGATGAGAAAGAGGACACGAATGCTCCAAATGGAATAACTGAGACTGTTGATGATGAGATGCGGAAAGAGGGCAGAGTTCAACTCAGTGTATACAAGTTGTCTTCTGATCTCTATACCATTGACGATTCTCTTCCATTCATCCTCAACATCCTCCTGGCAAATTTTGTTGGCTTGTTGGGAATTGCAGTAGTCCTGTCATATGTACAGGTGCCTTTCAAATTTGTTTAG

Coding sequence (CDS)

ATGCCTGGAGGGGACAGGGCTCATATTGGAGAAAGAGGGGTCAACTTATCTGGGGGCCAGAGAGCCCGATTAGCCATGGCAAGATTAAATCAGGATCTTTTTCCCCATCTTCCACAGGCAATATATTCTGCTGATATGGTTATTGTGATGGATAAAGGAAAGGTAAAGTGGATTGGAAATCCAACCAACTTGTCGGGCTCATCTTATGTTGCATTTACCCTGTCGAATGAACTTGATACTACCCAATGTATTCAAGGACAAGACTGCCAAGTAATTGAGAGAACTGAAACTCATAAACATTTCCTTGATGAGAAAGAGGACACGAATGCTCCAAATGGAATAACTGAGACTGTTGATGATGAGATGCGGAAAGAGGGCAGAGTTCAACTCAGTGTATACAAGTTGTCTTCTGATCTCTATACCATTGACGATTCTCTTCCATTCATCCTCAACATCCTCCTGGCAAATTTTGTTGGCTTGTTGGGAATTGCAGTAGTCCTGTCATATGTACAGGTGCCTTTCAAATTTGTTTAG

Protein sequence

MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQCIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYKLSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVPFKFV

Homology

[Close]

BLAST of HG10019481 vs. NCBI nr
Match: XP_038903957.1 (ABC transporter C family member 13 isoform X4 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 7.9e-59
Identity = 156/323 (48.30%), Postives = 162/323 (50.15%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
           MPGGD AHIGERGVNLSGGQRARLA+AR                                
Sbjct: 537 MPGGDMAHIGERGVNLSGGQRARLALARALYHGLDILMLDDVLSAVDAQVADWILRNAIL 596

Query: 61  -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                   + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYVAFTLSNELDT +
Sbjct: 597 GPLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVAFTLSNELDTAK 656

Query: 121 CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
           CIQGQ CQVIERTETHK+FLDEKEDTNAPNG+TETVDDEMRKEGRVQLSVYK        
Sbjct: 657 CIQGQGCQVIERTETHKYFLDEKEDTNAPNGVTETVDDEMRKEGRVQLSVYKNYAAFCGW 716

[Close]

BLAST of HG10019481 vs. NCBI nr
Match: XP_038903953.1 (ABC transporter C family member 13 isoform X1 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 7.9e-59
Identity = 156/323 (48.30%), Postives = 162/323 (50.15%), Query Frame = 0


Query: 1    MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
            MPGGD AHIGERGVNLSGGQRARLA+AR                                
Sbjct: 727  MPGGDMAHIGERGVNLSGGQRARLALARALYHGLDILMLDDVLSAVDAQVADWILRNAIL 786

Query: 61   -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                    + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYVAFTLSNELDT +
Sbjct: 787  GPLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVAFTLSNELDTAK 846

Query: 121  CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
            CIQGQ CQVIERTETHK+FLDEKEDTNAPNG+TETVDDEMRKEGRVQLSVYK        
Sbjct: 847  CIQGQGCQVIERTETHKYFLDEKEDTNAPNGVTETVDDEMRKEGRVQLSVYKNYAAFCGW 906

[Close]

BLAST of HG10019481 vs. NCBI nr
Match: XP_038903958.1 (ABC transporter C family member 13 isoform X5 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 7.9e-59
Identity = 156/323 (48.30%), Postives = 162/323 (50.15%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
           MPGGD AHIGERGVNLSGGQRARLA+AR                                
Sbjct: 536 MPGGDMAHIGERGVNLSGGQRARLALARALYHGLDILMLDDVLSAVDAQVADWILRNAIL 595

Query: 61  -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                   + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYVAFTLSNELDT +
Sbjct: 596 GPLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVAFTLSNELDTAK 655

Query: 121 CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
           CIQGQ CQVIERTETHK+FLDEKEDTNAPNG+TETVDDEMRKEGRVQLSVYK        
Sbjct: 656 CIQGQGCQVIERTETHKYFLDEKEDTNAPNGVTETVDDEMRKEGRVQLSVYKNYAAFCGW 715

[Close]

BLAST of HG10019481 vs. NCBI nr
Match: XP_038903954.1 (ABC transporter C family member 13 isoform X2 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 7.9e-59
Identity = 156/323 (48.30%), Postives = 162/323 (50.15%), Query Frame = 0


Query: 1    MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
            MPGGD AHIGERGVNLSGGQRARLA+AR                                
Sbjct: 726  MPGGDMAHIGERGVNLSGGQRARLALARALYHGLDILMLDDVLSAVDAQVADWILRNAIL 785

Query: 61   -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                    + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYVAFTLSNELDT +
Sbjct: 786  GPLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVAFTLSNELDTAK 845

Query: 121  CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
            CIQGQ CQVIERTETHK+FLDEKEDTNAPNG+TETVDDEMRKEGRVQLSVYK        
Sbjct: 846  CIQGQGCQVIERTETHKYFLDEKEDTNAPNGVTETVDDEMRKEGRVQLSVYKNYAAFCGW 905

[Close]

BLAST of HG10019481 vs. NCBI nr
Match: XP_038903956.1 (ABC transporter C family member 13 isoform X3 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 7.9e-59
Identity = 156/323 (48.30%), Postives = 162/323 (50.15%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
           MPGGD AHIGERGVNLSGGQRARLA+AR                                
Sbjct: 672 MPGGDMAHIGERGVNLSGGQRARLALARALYHGLDILMLDDVLSAVDAQVADWILRNAIL 731

Query: 61  -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                   + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYVAFTLSNELDT +
Sbjct: 732 GPLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVAFTLSNELDTAK 791

Query: 121 CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
           CIQGQ CQVIERTETHK+FLDEKEDTNAPNG+TETVDDEMRKEGRVQLSVYK        
Sbjct: 792 CIQGQGCQVIERTETHKYFLDEKEDTNAPNGVTETVDDEMRKEGRVQLSVYKNYAAFCGW 851

[Close]

BLAST of HG10019481 vs. ExPASy Swiss-Prot
Match: Q9SKX0 (ABC transporter C family member 13 OS=Arabidopsis thaliana OX=3702 GN=ABCC13 PE=2 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 99/325 (30.46%), Postives = 118/325 (36.31%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMAR-------------------------------- 60
           M GGD A IG++G+NLSGGQRAR A+AR                                
Sbjct: 677 MVGGDMACIGDKGLNLSGGQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALL 736

Query: 61  ---LNQD---LFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
              LN+    +  H  QAI  ADM++VMDKGKV W G+ T++  S    F+L+NE D   
Sbjct: 737 GPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFD--- 796

Query: 121 CIQGQDCQVIERTETHKHFLDEKED--TNAPNGITETVDDEMRKEGRVQLSVY------- 175
                   + +R ET    L  KED          + V  E RKEGRV++ VY       
Sbjct: 797 --MSSPNHLTKRKET----LSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFS 856

[Close]

BLAST of HG10019481 vs. ExPASy Swiss-Prot
Match: Q5T3U5 (ATP-binding cassette sub-family C member 10 OS=Homo sapiens OX=9606 GN=ABCC10 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 45/176 (25.57%), Postives = 75/176 (42.61%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMAR-----------------LNQDLFPHL------ 60
           +P GD+  +GE+GV LSGGQRAR+A+AR                 ++ D+  HL      
Sbjct: 711 LPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHLLHRCIL 770

Query: 61  --------------PQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQC 120
                          + +  AD V++M+ G++   G P+ +         L   +     
Sbjct: 771 GMLSYTTRLLCTHRTEYLERADAVLLMEAGRLIRAGPPSEI-------LPLVQAVPKAWA 830

Query: 121 IQGQD-----CQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK 135
             GQ+      Q ++  E  K  L+E++ T+        + +E +KEG V L VY+
Sbjct: 831 ENGQESDSATAQSVQNPEKTKEGLEEEQSTSG-----RLLQEESKKEGAVALHVYQ 874

HSP 2 Score: 43.1 bits (100), Expect = 3.8e-03
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 134  KLSSDLYTIDDSLPFILNILLANFVGLLGIAVVL 168
            + SSD+   DDSLPFILNILLAN  GLLG+  VL
Sbjct: 1027 RFSSDVACADDSLPFILNILLANAAGLLGLLAVL 1060

[Close]

BLAST of HG10019481 vs. ExPASy Swiss-Prot
Match: Q9VL32 (ATP-binding cassette sub-family C member Sur OS=Drosophila melanogaster OX=7227 GN=Sur PE=1 SV=4)

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-05
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMD 52
           MP GD + IGERG+N+SGGQR R+A+AR           AIYS+  V++MD
Sbjct: 899 MPRGDLSIIGERGINISGGQRQRIAIAR-----------AIYSSANVVIMD 938

[Close]

BLAST of HG10019481 vs. ExPASy Swiss-Prot
Match: Q8R4P9 (ATP-binding cassette sub-family C member 10 OS=Mus musculus OX=10090 GN=Abcc10 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 8.9e-05
Identity = 44/171 (25.73%), Postives = 72/171 (42.11%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMAR-----------------LNQDLFPHL------ 60
           +P GD+  +GE+GV LSGGQRAR+A+AR                 ++ D+  HL      
Sbjct: 712 LPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCIL 771

Query: 61  --------------PQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQC 120
                          + +  AD+V++M+ G++   G P+ +        T   E +    
Sbjct: 772 GVLSHTTRLLCTHRTEYLERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWAEKEQV-A 831

Query: 121 IQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK 135
             GQ   V +   T +  L+ ++ T         V +E + EG V L VY+
Sbjct: 832 TSGQSPSVCDLERTTEEELEVEQSTCGC-----LVQEESKSEGAVALHVYR 876

HSP 2 Score: 45.4 bits (106), Expect = 7.6e-04
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 134  KLSSDLYTIDDSLPFILNILLANFVGLLGIAVVL 168
            + SSD+  +DDSLPF+LNILLAN VGLLG+  VL
Sbjct: 1032 RFSSDVACVDDSLPFLLNILLANSVGLLGLLAVL 1065

[Close]

BLAST of HG10019481 vs. ExPASy Swiss-Prot
Match: Q9C8G9 (ABC transporter C family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMD 52
           +PGGD   IGERGVN+SGGQ+ R++MAR           A+YS   V ++D
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMAR-----------AVYSNSDVCILD 764

[Close]

BLAST of HG10019481 vs. ExPASy TrEMBL
Match: A0A1S3CN39 (ABC transporter C family member 13 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502816 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 9.4e-58
Identity = 151/290 (52.07%), Postives = 155/290 (53.45%), Query Frame = 0


Query: 1    MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
            MPGGD AHIGERGVNLSGGQRARLAMAR                                
Sbjct: 724  MPGGDMAHIGERGVNLSGGQRARLAMARALYHGLDIIMLDDVLSAVDAQVADWILHHAIL 783

Query: 61   -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                    + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYV FT  NELD+TQ
Sbjct: 784  GSLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVTFTPLNELDSTQ 843

Query: 121  CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
            CIQ QDCQVIERTET K FLDEKEDTNAPN +TETVD EMR EGRVQLSVYK        
Sbjct: 844  CIQRQDCQVIERTETCKPFLDEKEDTNAPNEVTETVDGEMRNEGRVQLSVYKNYAAFCGR 903

[Close]

BLAST of HG10019481 vs. ExPASy TrEMBL
Match: A0A1S3CNK9 (ABC transporter C family member 13 isoform X7 OS=Cucumis melo OX=3656 GN=LOC103502816 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.3e-54
Identity = 151/323 (46.75%), Postives = 155/323 (47.99%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
           MPGGD AHIGERGVNLSGGQRARLAMAR                                
Sbjct: 584 MPGGDMAHIGERGVNLSGGQRARLAMARALYHGLDIIMLDDVLSAVDAQVADWILHHAIL 643

Query: 61  -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                   + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYV FT  NELD+TQ
Sbjct: 644 GSLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVTFTPLNELDSTQ 703

Query: 121 CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
           CIQ QDCQVIERTET K FLDEKEDTNAPN +TETVD EMR EGRVQLSVYK        
Sbjct: 704 CIQRQDCQVIERTETCKPFLDEKEDTNAPNEVTETVDGEMRNEGRVQLSVYKNYAAFCGW 763

[Close]

BLAST of HG10019481 vs. ExPASy TrEMBL
Match: A0A1S3CN77 (ABC transporter C family member 13 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502816 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.3e-54
Identity = 151/323 (46.75%), Postives = 155/323 (47.99%), Query Frame = 0


Query: 1    MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
            MPGGD AHIGERGVNLSGGQRARLAMAR                                
Sbjct: 697  MPGGDMAHIGERGVNLSGGQRARLAMARALYHGLDIIMLDDVLSAVDAQVADWILHHAIL 756

Query: 61   -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                    + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYV FT  NELD+TQ
Sbjct: 757  GSLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVTFTPLNELDSTQ 816

Query: 121  CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
            CIQ QDCQVIERTET K FLDEKEDTNAPN +TETVD EMR EGRVQLSVYK        
Sbjct: 817  CIQRQDCQVIERTETCKPFLDEKEDTNAPNEVTETVDGEMRNEGRVQLSVYKNYAAFCGW 876

[Close]

BLAST of HG10019481 vs. ExPASy TrEMBL
Match: A0A1S3CN71 (ABC transporter C family member 13 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502816 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.3e-54
Identity = 151/323 (46.75%), Postives = 155/323 (47.99%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
           MPGGD AHIGERGVNLSGGQRARLAMAR                                
Sbjct: 585 MPGGDMAHIGERGVNLSGGQRARLAMARALYHGLDIIMLDDVLSAVDAQVADWILHHAIL 644

Query: 61  -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                   + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYV FT  NELD+TQ
Sbjct: 645 GSLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVTFTPLNELDSTQ 704

Query: 121 CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
           CIQ QDCQVIERTET K FLDEKEDTNAPN +TETVD EMR EGRVQLSVYK        
Sbjct: 705 CIQRQDCQVIERTETCKPFLDEKEDTNAPNEVTETVDGEMRNEGRVQLSVYKNYAAFCGW 764

[Close]

BLAST of HG10019481 vs. ExPASy TrEMBL
Match: A0A1S3CPQ0 (ABC transporter C family member 13 isoform X8 OS=Cucumis melo OX=3656 GN=LOC103502816 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.3e-54
Identity = 151/323 (46.75%), Postives = 155/323 (47.99%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARL------------------------------- 60
           MPGGD AHIGERGVNLSGGQRARLAMAR                                
Sbjct: 581 MPGGDMAHIGERGVNLSGGQRARLAMARALYHGLDIIMLDDVLSAVDAQVADWILHHAIL 640

Query: 61  -------NQDLFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
                   + L  H  QAIYSADMVIVMD+GKVKWIGNP NLSGSSYV FT  NELD+TQ
Sbjct: 641 GSLAQKRTRILSTHNHQAIYSADMVIVMDRGKVKWIGNPANLSGSSYVTFTPLNELDSTQ 700

Query: 121 CIQGQDCQVIERTETHKHFLDEKEDTNAPNGITETVDDEMRKEGRVQLSVYK-------- 175
           CIQ QDCQVIERTET K FLDEKEDTNAPN +TETVD EMR EGRVQLSVYK        
Sbjct: 701 CIQRQDCQVIERTETCKPFLDEKEDTNAPNEVTETVDGEMRNEGRVQLSVYKNYAAFCGW 760

[Close]

BLAST of HG10019481 vs. TAIR 10
Match: AT2G07680.1 (multidrug resistance-associated protein 11 )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 99/325 (30.46%), Postives = 118/325 (36.31%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMAR-------------------------------- 60
           M GGD A IG++G+NLSGGQRAR A+AR                                
Sbjct: 671 MVGGDMACIGDKGLNLSGGQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALL 730

Query: 61  ---LNQD---LFPHLPQAIYSADMVIVMDKGKVKWIGNPTNLSGSSYVAFTLSNELDTTQ 120
              LN+    +  H  QAI  ADM++VMDKGKV W G+ T++  S    F+L+NE D   
Sbjct: 731 GPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFD--- 790

Query: 121 CIQGQDCQVIERTETHKHFLDEKED--TNAPNGITETVDDEMRKEGRVQLSVY------- 175
                   + +R ET    L  KED          + V  E RKEGRV++ VY       
Sbjct: 791 --MSSPNHLTKRKET----LSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFS 850

[Close]

BLAST of HG10019481 vs. TAIR 10
Match: AT1G30400.1 (multidrug resistance-associated protein 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMD 52
           +PGGD   IGERGVN+SGGQ+ R++MAR           A+YS   V ++D
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMAR-----------AVYSNSDVCILD 764

[Close]

BLAST of HG10019481 vs. TAIR 10
Match: AT1G30400.2 (multidrug resistance-associated protein 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMD 52
           +PGGD   IGERGVN+SGGQ+ R++MAR           A+YS   V ++D
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMAR-----------AVYSNSDVCILD 764

[Close]

BLAST of HG10019481 vs. TAIR 10
Match: AT2G34660.1 (multidrug resistance-associated protein 2 )

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMD 52
           +PGGD   IGERGVN+SGGQ+ R++MAR           A+YS   V + D
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMAR-----------AVYSNSDVYIFD 764

[Close]

BLAST of HG10019481 vs. TAIR 10
Match: AT2G34660.2 (multidrug resistance-associated protein 2 )

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 1   MPGGDRAHIGERGVNLSGGQRARLAMARLNQDLFPHLPQAIYSADMVIVMD 52
           +PGGD   IGERGVN+SGGQ+ R++MAR           A+YS   V + D
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMAR-----------AVYSNSDVYIFD 764

The following BLAST results are available for this feature:

BLAST of HG10019481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903957.1	7.9e-59	48.30	ABC transporter C family member 13 isoform X4 [Benincasa hispida]	[more]
XP_038903953.1	7.9e-59	48.30	ABC transporter C family member 13 isoform X1 [Benincasa hispida]	[more]
XP_038903958.1	7.9e-59	48.30	ABC transporter C family member 13 isoform X5 [Benincasa hispida]	[more]
XP_038903954.1	7.9e-59	48.30	ABC transporter C family member 13 isoform X2 [Benincasa hispida]	[more]
XP_038903956.1	7.9e-59	48.30	ABC transporter C family member 13 isoform X3 [Benincasa hispida]	[more]

BLAST of HG10019481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKX0	1.4e-18	30.46	ABC transporter C family member 13 OS=Arabidopsis thaliana OX=3702 GN=ABCC13 PE=...	[more]
Q5T3U5	1.4e-05	25.57	ATP-binding cassette sub-family C member 10 OS=Homo sapiens OX=9606 GN=ABCC10 PE...	[more]
Q9VL32	6.8e-05	50.98	ATP-binding cassette sub-family C member Sur OS=Drosophila melanogaster OX=7227 ...	[more]
Q8R4P9	8.9e-05	25.73	ATP-binding cassette sub-family C member 10 OS=Mus musculus OX=10090 GN=Abcc10 P...	[more]
Q9C8G9	2.6e-04	47.06	ABC transporter C family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCC1 PE=1 ...	[more]

BLAST of HG10019481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CN39	9.4e-58	52.07	ABC transporter C family member 13 isoform X5 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CNK9	6.3e-54	46.75	ABC transporter C family member 13 isoform X7 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CN77	6.3e-54	46.75	ABC transporter C family member 13 isoform X4 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CN71	6.3e-54	46.75	ABC transporter C family member 13 isoform X6 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CPQ0	6.3e-54	46.75	ABC transporter C family member 13 isoform X8 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of HG10019481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07680.1	1.0e-19	30.46	multidrug resistance-associated protein 11	[more]
AT1G30400.1	1.8e-05	47.06	multidrug resistance-associated protein 1	[more]
AT1G30400.2	1.8e-05	47.06	multidrug resistance-associated protein 1	[more]
AT2G34660.1	3.1e-05	47.06	multidrug resistance-associated protein 2	[more]
AT2G34660.2	3.1e-05	47.06	multidrug resistance-associated protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..30 e-value: 3.2E-5 score: 25.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..68
None	No IPR available	PANTHER	PTHR24223:SF330	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7	coord: 4..134
None	No IPR available	PANTHER	PTHR24223:SF330	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7	coord: 134..169
None	No IPR available	PANTHER	PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	coord: 4..134 coord: 134..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019481.1	HG10019481.1	mRNA