HG10019426 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019426
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 21746621 .. 21746824 (+)
RNA-Seq ExpressionHG10019426
SyntenyHG10019426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCTATGAGATTCTCTCCTTCTGCTGCTGTTGTTTTGGTACTTGCAATGGTGTGCTTAGAAATGAAGAAGGTTCATGGCATTGAGGATGAGATAGCTCCAATGCCTGCTATGGCTGCTGGGTCTGCATTTCCTTATACTGTTCCCTTTGATTTTAATTCTGTTTTCCCTCTTTTGCTCTGTATTTTTGGTGTATAA

mRNA sequence

ATGGCTTCCTCTATGAGATTCTCTCCTTCTGCTGCTGTTGTTTTGGTACTTGCAATGGTGTGCTTAGAAATGAAGAAGGTTCATGGCATTGAGGATGAGATAGCTCCAATGCCTGCTATGGCTGCTGGGTCTGCATTTCCTTATACTGTTCCCTTTGATTTTAATTCTGTTTTCCCTCTTTTGCTCTGTATTTTTGGTGTATAA

Coding sequence (CDS)

ATGGCTTCCTCTATGAGATTCTCTCCTTCTGCTGCTGTTGTTTTGGTACTTGCAATGGTGTGCTTAGAAATGAAGAAGGTTCATGGCATTGAGGATGAGATAGCTCCAATGCCTGCTATGGCTGCTGGGTCTGCATTTCCTTATACTGTTCCCTTTGATTTTAATTCTGTTTTCCCTCTTTTGCTCTGTATTTTTGGTGTATAA

Protein sequence

MASSMRFSPSAAVVLVLAMVCLEMKKVHGIEDEIAPMPAMAAGSAFPYTVPFDFNSVFPLLLCIFGV
Homology
[Close]
BLAST of HG10019426 vs. NCBI nr
Match: KGN58599.1 (hypothetical protein Csa_001638 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 1  MASSMRFS--PSAAVVLVLAMVCLEMKKVHGIEDEIAPMPAMAAGSAFPYTVPFDFNSVF 60
          MASSMRF      AVVLVLAMV +EMKKV  IEDE+APMPAMAAG AFP +V   FN V 
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCIFGV 68
          PLLLC+FGV
Sbjct: 61 PLLLCVFGV 69

[Close]
BLAST of HG10019426 vs. NCBI nr
Match: KAG6581583.1 (hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 1  MASSMRFSP--SAAVVLVLAMVCLEMKKVHGIEDEIAPMPAMAAGSAFPYTVPFDFNSVF 60
          MA SMR     + A VL LAMVC EMKKVHGIE EI+PMPAMAAGSA P TV + FN+VF
Sbjct: 1  MAPSMRLPHYYATAAVLALAMVCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNAVF 60

Query: 61 PLLLCIFG 67
          P LLC FG
Sbjct: 61 P-LLCTFG 67

[Close]
BLAST of HG10019426 vs. ExPASy TrEMBL
Match: A0A0A0LCE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 1  MASSMRFS--PSAAVVLVLAMVCLEMKKVHGIEDEIAPMPAMAAGSAFPYTVPFDFNSVF 60
          MASSMRF      AVVLVLAMV +EMKKV  IEDE+APMPAMAAG AFP +V   FN V 
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCIFGV 68
          PLLLC+FGV
Sbjct: 61 PLLLCVFGV 69

The following BLAST results are available for this feature:
BLAST of HG10019426 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58599.11.5e-1371.01hypothetical protein Csa_001638 [Cucumis sativus][more]
KAG6581583.12.7e-1269.12hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of HG10019426 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10019426 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCE57.1e-1471.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1[more]
BLAST of HG10019426 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019426.1HG10019426.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane