HG10019385 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019385
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L44
LocationChr04: 21204930 .. 21212889 (-)
RNA-Seq ExpressionHG10019385
SyntenyHG10019385
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACGACACCGACGATCAGTCTCTCCTAATTCGTTTGGGCTTTATACAACGTAAGCTCTCCCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTATGAATCTACCATGATTCCAATGCGGATTACTATGTTCCCTCTCCCATTGCGAGACCTCGAAGATCCTTTGCTCTGCCATATTTACGTCGTTCGATTGCTCGCTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGATATCACGTCTGTCGTTCGTGAACTATTGGCCGCCGGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTACTGGAGTGACCAGATCGGTGAAAGTAGGCGCGGTGTTGTGGCGGAGGAGACGGTGATTCTGGAAGAAGCTCCGGCGAGGAGAACGGCGGCGGAGACGGCGATTGAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGGGGGAGAAGAGTTGGGAGATTGCTGTGTTTGTTATGAAGAATTGAAGGAAGGGGAGAAGGAGGTGAGTAGGATCGGGTGCGGTCATGTCTATCATAAGTCATGTATTCTCACTTGGGTTCAAAGGAACGATTCTTGTCCTCTGTGCAGAATGAAAATAGAATAAGAAATTTAAGACATTATTCTATTTTAGTTAAAAAAACATTTTAGTAAAATAAGAATTTAGTCATTCAACTTTATATTTAATCCTATGTATTTCTTTTTTTTTTTGTAAGTTGAAATACATTTGTTGTATGGTTACGGTGAAATTTATTAAATAATGATTTTTGTCTTCTATCATAATTAAATCTTTAATAAAAAATTTGTACATGTGACTTTGAGTATATGTATTAGTATACTGATAAGGGTATGTATCAATATTATAGAGTCTGCTTGTAGTGAATATTATGTGATAAAATAATAACAATAATTAAAATGATTGTTTAATTAAATCTTAAAATAGACATTTTGTAAATGTTGGGATCGAAATTGTTATTTGTTGTAATTTTTTTTCTTCTTGTTTGTTCGTTTTGAAAGAAAAAAAAACTCTTGTGAAAACACCTAAATAAACATAATTATTATTAAATAGTATAAAATATAAGTCTCTTAATAATTATGATTATATACTAAAATAAATTAAAATATATACTTTTAAATTTTTATTAACCATAATAATATAAATTTTAATTTTATGGATCAAAATAAAGAGCTAACTAAAATTTAAAATAGCACACTATCTCAAAGATGGGTACTTAACAATCAATCTAAATATATAACTTAGTGAAAAAAAAAATATCAATTATCTATTTAAAGATCAATAGTTTTCGATCATTTACTCTACCATTGTTGAATAAAAAATAAAATACTAAAGAACAAAAAAAAGACGACTTGTATCTAAAAACAATAACAATAAATAAAAATAAAACATCAAAGACTTTGATTAATTATGTACATTAACTAATCTACATTTCAACTATTTTCAATTGCCCATTTGACTTATATTACTATAATTAGAATTATAATTAAAAATGCAATATTTAGCGTGTAAAACCATCACACATTAGGAAAAATGGATTGTATATAGAAATTGAGATGCACTAACAAACGGATTATATCTCAAAAATAGAGATAATTTCGAATTAAATAATATACATACACTAAATACAACAATAAATTTCTTAAACTTAAGAAGTAAACTATATGGAATTACATAAACATTATAAATTACAATAACCTCAAACGAATAATTGAAAATTCAATAGATAGTCGAGGCACACTTTCAAAGTGTTATTCTAATAACAATTATTCATTATACATGAGTTGTCAATTGACTATGGGTGATCATCTTAGTAGGATACAATGATTAATCCTAGTAAAATATCAAACCTTGAACTATCCAAATTTGCAAAAGTATTGGATATTTAACTCGAGATTAAGAAAAAAAAAAAAAAAAAAAAAAAGGAAGAAGAGAGGAGGAGTACTCTTCAAAATGCAAGAGATGCTCTAAATGAAGAAATAAACGACTATTTTACAGACTAGAAACTTAGTATTTCTTTAAAAAAAAAAAAAATCATTGAAACTTATGTCAAACATAACTCAATGATTAGTTACTTGACAAATTGCAACTACATATTTCAAATGAAACATCATTCATTTTGATGTTTCTAATCTAATTTAGGTGTCTTGACATTAAACAACAAATTAGATGTAACTACGAATTTAATTTACATTAATTTTTCACTTCTTTCCCAAAATGGTAATAACATCTAATACCTTCTGTCAACTTGAGCATAGTTCAATTAATTAAGACATATATCTCAGATTAAGAGATTAAAAGTTCACATCTCTCGTTTCCTACATACCGTTGAAAAAAAAATAGAACCATTTTTTTTTTCAACTTTGTTATTATTATGCACAAATATCCGTTCATTTAAATGAATAATCAATTTTCATCAACTTTAAGCATATGTTAACTAATCAGAAGATGTCAAATTGAGCTTTGTGGTAATTGATTTGTCCTCTTTTATTTTGAAATTTGATTTTACTTCTTATAATATATTAAAAATATACATCTTTTAGAAAAATATTAATTGTAAACTAGGCCGATTTTACTCTTGAACTAAATCGATCATGCTTGATTATAATCTAGACCACTAATTCACTTGATTATAAACGCCTGAACTAATTATTCAGTTCATAATCATTTTGAGGTTTTCACTATTATCTATTATTCTATTACCAATCACAGTTGGCTTCTAGTTATTGATTTACATACTTAAAGTCATAGTTTATTGTTTAATTAAGTTTGTTCTAAAATTTCACTAAAAAATTCATAGTATTATTAATTTCCGTGATACTCGTAATTTTTTCCAGAATATCAATCGATATATCCATAAATCTTAGTTATCGATATTTACATCAATAACGATATTTTCGTCTTTAGAAGAAATAATATTTTGAATGGGTGTTGGTATGTTGGCCTTGACGTGGATTTTCTCTTGGTTGGTTGGAAATCTTTATAAAATTGCAAATTTATTTCATTTGATAAACATTTGATTTTTGACATTTAAAAATTAAGCTTATACCAAAAATCAAGTTAAAGTTTTGAAAGAAAAAAAAACAATTTCCAATTTCTTTTTGTTTCTAAAATTTTACATAGGAGTTTAAGGGGTGTTTGGGCCCCTAAACTTCAAGATAGCTCACTCCATATTTGAAGCTCTAATTATAATACGCGTGTTTCCAATTATTATTACATATAATTACCTACATTATTACTATTTCAAACTAAAATAGTCTGTACCTTAAACATATACTATTATAACTCATAGACTATAATAACCAACTTAGCACCCCTAACACCTTCTAAGTATTTTTTTTTTTTTAAAGATATGTGAAAACCATAATAGAGAAATTGAGAGGAAACAAACATAAATTTCAAAACACAAAATGGTTATCAAATACAAGACCTAATTAATTTTCGGTTTATACTTTTTGAAAATTGTGCTTGTTTTCTCACAAATTCTTTACCATTTATATTTTCATCTTTTTCTAAGTATATATATGAATTCTTAGCCAAATTCAAAAAACAAAAACAAATTTTGAAAAAACTATTTATTAATTTTTAAAACTTAACTTGGTCGTTAAAAATACTCCTAAAAAATATAACAAAACAAACAAATCAAACCGTGGAACCAATACTATTTATAAGCTTGATTTTTTAATACCAATATTTTGTTTAATAATCATTTTAACTTTTTGTTTTTTAAAAATCATACTTATAAATATTACTTCCCAAAATAGTTTCTTTGTCTTATATATACTTCTTATCCATGTTTCAAAATTCAATCTAAGTTTTAAAAACTTTTATATATATATCATTTTTATTTTTGGAATTTAAAGGAAAATCAAATTGTTAAAAGAGGTAAAATAACGTGAATACGTTGTTTATATCAGCTCAGCTATTTAGAGGAATTACAATTCTACCAGCTATTCAAACAAAAAGTTTAAAGTTTAAACTAATGTTTCTTTCAACGAAAAAAAATTAACTAATGTAATTAGACATTTTTAATTAGATTTGATTTACTATGGGTAGAAAATAAAAACAAAAACGTTTTTTTCCAATATTTTACCACGAAAGCCCTCGAATTAAAAGGGTGTAATGCTAAGAAAATGACCAATATGCATACATTTCAAAAAAAAAAACATGAATATGTTCTTTTTGTCTTTATTGTATTTGTTTTTTTAATGAATCTTTTAAAATATTTAATTTAATTTCTTATGTATTAAGTTTCAGCCAAGTTTCTTATCCTCAAGTAATGTTGACAAAATATGTTTTGGAAATTTAATATTTTCATTCTTTTTAAGGAAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAATTTCACTGTCTATCAGGGATAGATCGCGATAGAATTCTATTGCTTTCTATCGTTCAAGCAAATAAATTCTATCGCTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCTATCATTGATTGACTGTAAAATTTTTCTATATTTGTAAATAGTTTGGCTTATTTTTTTATATTTGAAAATAACCCTTCTTTTAATGAGTCCGTAAATTTTTAACTAACCATAATGACGTTTGAATAAATTATTGTCTTTTGGAGACTTGGTTTTCATTCTGTTGGCAGAGTGAATTATGCAAAAATTGAGGGCCAACGTGTATTTTCTTCCTAAATATTAGACGTTTGAATTTTTACTGATATATTATTGAACTAAAAAAAGACGCGTGCAAGGAATAAAAATGATTGTGAATCATATAAGAAAAAAATTCAAAGATTCAATAATCTCTATAAAGTAATTATATATTTTAGTAGTAAATGAAGCTCACAACTAGTTACAACACATAACTTTAACTGAGAGTTCAAAAGAATTCTCGAGACTACGTTCAGTCTTCTACAACCGTAGGTACTACTATGAGCTTTATCCAATCTATGAGTTTTATCTTATCTCCATTTGGAATAATTTATGCTGAAATTTTTAATTTGTTAAGTAAGGTTAATGTTGTGTGTCACGCTCGTAGAGCTTGTAATCAGGTGGCCCATCAATTGGTCACCCATACTTTTAATGTTTCGATGTGTTGTCGTTGGATTGATTCTCTTCCCCGTTGGATTTCGGCCTTTGTTGGAAAATAGATGGTGGCTTATGGGCCTTTGGTGCCGTGTTAATCGTTATCCTACTTTTTCTCAAAAAAAAAAAAAAAATCAAATTGTAGGTACTACTATGATGGAGATTATAAATGACCCTCAAACTTATGCTACAAATCATTCTTCAAATAATTCAACATAAAACTATCGACAGCCAAGTTCCACAACGTGGTAGCTTGGGATAAACAACCGAATAAACTTTCAACACAACTAACAATAGTTATTGATACTATTTGCAACTTACCCAAACAAAACATGAAATTTAGAGGTAAAAATGTGTTTATAGACTTAATTTTTGAAAACTAAAATCCAAAACGGCCCAAATTTCTCAAAGGACAATTGCAAATATAGCAATCAGGCCCAAAATATTTGCAAGTATAGCACAATGTAAAAGAATTTGCAGATCTAACAAAATTTAGATTATGTTTTCGAAGTCTATCAATGATAAACTATGTCACTAGTAGGGACCTATTAGTGACAAACCGTATTGCTAGTAGGAGTTTATTAGTGATAGACCATATCTCTGGTAGGAGTTTATCAGTGATAAAGTCTATTGCAGATAGATTCTGCAATATTTATAATTTTCTAAAAATCTTGCTATACAATTAATTATAATCCTAAAAGTGCTACCCAATACAATTCTACATTCCTTTCTCAAACCAACCTTATAAAGTTTAATTGGGCCGTGAACGATTTTATTGGGCCCAAATCCACAAACAGCAAACGTGGATCTCTTGGTTCTCTTCTCCAGTTCAACATATATATAACTATCATTCCTCTTTTCAATTCCTACTTTGCCACTAATTAGGGTTTTTCAAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTACTTCTTCCCCTTCCTCCATTTTCTGCAATTTTAATGTCTTTTACTTCTTCTCATGATTCCCTCATGGGTCTACCTGTGTTCTACATCTCTGATTTCTTTCACGATTTGTTCTATTTGGTTGCCGTCAATTAGTTCTGTGATGGAGAAGCCAATAGTCGTAGTTACGTTTTGAAAGTTTAGCGTTTAATGAAGAGCATTGACGTTGTACTGTTTATGTCCTTCGTTTTCTATTGCGTGTTTTTTTTTGTCATACCATCACTTGATCTGGGACTGTGCTTAGAAGTCTACTGGTTTATCTGTTGCAGTCGAGATTAGTTAGGCTTAGTTAGCGAGGTGAGAATCGAAGTTCTATGGAGCTAGTTGTAGAATAGAACACCTGAATTATCTGGCAGCTCGTGCCGTGATCACGTCGATTTTGGAAGTATTTTTGTTGCACGGACTGCAAGAGGATGAATTAAAGGACTACTGATATTCGTAGCTTATGCAATCTGGATCCTGGATTTAGTAAATGAAGATTGCTGCATATGAGTGAAATCTGTAGTGTCACTAAACTTTTTTTTTGGGGGGATTTCATTGATGGTATGAAATTTAAAAGGGGAACCCCAATAAGACTAATTGCATAAGCCCTCTCCAGTTGGAGAGGAGGGAGGAATAACTTTAGTGATGGAAGAGAGGGGGTGTCACTGAAGAACTTTTGAACGCCTAGGATTGAGTGAGATTGGAGTGTTTCTTCCTAAATTGCTTAAAGGGTACTTTCACAAGGTAAACATTGCACATAGTGTGGATTATAAATTCTGGAGCTTTGATTATAATAAGTTCATTGATTGGCCCTCCGAAAGAACTTTAAGCCATGGAATCAAACTGTAGTAGTGGGTTTGCAGTATTTGTGTCTTTTTTGTCATTACAGCTTGTAGCGTCGTGGTTTAAGATTTGATTTGTGGATATGGTAATGTGAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTATGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGTTAGTTAATTTTCTCATTTCCAGTCAAATTATTACTTTATCCTTTTCCAAGGTGCCATTTAGATTAGAACTGAATTGTAACTCCTGAATTTCACAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACACGTATCCCAGCACCCAATCAAGGTTAGAATGCAAAGTATTTTATTATTTTCTGATTATTGCCTCTCTCTATGAAGTATCTAGTCTATTGCATTTTCGGGAGAAAAAAATCTTTCAAGCATTCAGTGGTTCTCATACTAGATATTTAAGGCTGTTGGTCCAATCAGCGTTAATCCATTTTCCTCCCCTTAGAGTAAATATCCATGTGACTGCTCTGCTATGCTAGTGAAGACAGTTGATACTTGATTCTAGGTTTTAAATGCCTTTACCTTTGGTGTACTTTTGTTTTCTCCATTCCTGTGCTTGAGTACGGTTTCGTAATTGAGTATTGAATTGGTACTCGGTGCTGAAATTGCAGTATTTGAATTAATTGTTTGCTCTTTTAGAAAATATGCAAGTTCAAATGAGGAACTCTAATTGTTAGTTATTATCTGGTGGGTATTGTGTGGTTCCCTCATCACATTTCTAAATTTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAG

mRNA sequence

ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACGACACCGACGATCAGTCTCTCCTAATTCGTTTGGGCTTTATACAACGTAAGCTCTCCCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTATGAATCTACCATGATTCCAATGCGGATTACTATGTTCCCTCTCCCATTGCGAGACCTCGAAGATCCTTTGCTCTGCCATATTTACGTCGTTCGATTGCTCGCTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGATATCACGTCTGTCGTTCGTGAACTATTGGCCGCCGGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTACTGGAGTGACCAGATCGGTGAAAGTAGGCGCGGTGTTGTGGCGGAGGAGACGGTGATTCTGGAAGAAGCTCCGGCGAGGAGAACGGCGGCGGAGACGGCGATTGAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGGGGGAGAAGAGTTGGGAGATTGCTGTGTTTGTTATGAAGAATTGAAGGAAGGGGAGAAGGAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTATGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACACGTATCCCAGCACCCAATCAAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAG

Coding sequence (CDS)

ATGTCTTCTCCCGGAACCGCTTCCACCTTCCGCTTCACTCTCCGCCGCCACGACGACACCGACGATCAGTCTCTCCTAATTCGTTTGGGCTTTATACAACGTAAGCTCTCCCGATCGCCGTCCGCTGGACTTCCGTACGAAATCCTCTATGAATCTACCATGATTCCAATGCGGATTACTATGTTCCCTCTCCCATTGCGAGACCTCGAAGATCCTTTGCTCTGCCATATTTACGTCGTTCGATTGCTCGCTTACTTGGACCTCACCGCCGTAACCTGCGATATAATCGCTAAGGATATCACGTCTGTCGTTCGTGAACTATTGGCCGCCGGAAACGTCGAGGTTAAGTTCCGCATTGTGGCGGAAATCGATCACATCCAAATGTACTGGAGTGACCAGATCGGTGAAAGTAGGCGCGGTGTTGTGGCGGAGGAGACGGTGATTCTGGAAGAAGCTCCGGCGAGGAGAACGGCGGCGGAGACGGCGATTGAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGGGGGAGAAGAGTTGGGAGATTGCTGTGTTTGTTATGAAGAATTGAAGGAAGGGGAGAAGGAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTATGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACACGTATCCCAGCACCCAATCAAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAG

Protein sequence

MSSPGTASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDITSVVRELLAAGNVEVKFRIVAEIDHIQMYWSDQIGESRRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELGDCCVCYEELKEGEKEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Homology
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BLAST of HG10019385 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 3.5e-83
Identity = 165/208 (79.33%), Postives = 182/208 (87.50%), Query Frame = 0 

Query: 1   MSSPGTASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRIT 60
           MSS  TASTFRF+LRRHDD+DDQSLLIRLGF+ R+LSRSPSAGLPYEIL+ES  IPMRI 
Sbjct: 1   MSSLQTASTFRFSLRRHDDSDDQSLLIRLGFMHRQLSRSPSAGLPYEILHESNSIPMRIN 60

Query: 61  MFPLPLRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDITSVVRELLAAGNVEVKFRIV 120
           MFPLPLRDLEDPLLC +YV+RLL+YLDL AV CDIIA DITS + E+LAAGN EVKFRIV
Sbjct: 61  MFPLPLRDLEDPLLCRVYVLRLLSYLDLNAVACDIIAHDITSFICEVLAAGNFEVKFRIV 120

Query: 121 AEIDHIQMYWSDQIGESRRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEELG 180
           A+IDHI+M+W +QIGESRRGVVAEETVILEEAP RRTAA+TAIERLK EKFDGF GEELG
Sbjct: 121 ADIDHIRMFWREQIGESRRGVVAEETVILEEAPTRRTAAKTAIERLKREKFDGFRGEELG 180

Query: 181 DCCVCYEELKEGEKEVNVPKTKKTYCKS 209
           DCCVC EELKEG+KEV+       Y KS
Sbjct: 181 DCCVCCEELKEGKKEVSRIGCGHVYHKS 208

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BLAST of HG10019385 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-55
Identity = 126/210 (60.00%), Postives = 151/210 (71.90%), Query Frame = 0 

Query: 6   TASTFRFTLRRHDDTDDQSLLIRLGFIQRKLSRSPSAGLPYEILYESTMIPMRITMFPLP 65
           TASTFR++LRR+D   DQSL IRLGF+ R LSRSPS+GLPYEILYE      R T FPL 
Sbjct: 5   TASTFRYSLRRNDGV-DQSLHIRLGFLWRLLSRSPSSGLPYEILYEIPSSSPRETTFPLS 64

Query: 66  LRDLEDPLLCHIYVVRLLAYLDLTAVTCDIIAKDITSVVRELLAAGNVEVKFRIVAEIDH 125
           LRDLEDPL C  Y+ +LL  LDL AVTCDI+A+ ITSVV E+L +GN +VKF+I AEIDH
Sbjct: 65  LRDLEDPLFCEAYIAQLLHSLDLGAVTCDIVARKITSVVVEVLESGNYDVKFQIAAEIDH 124

Query: 126 IQMYWSDQIGES-------RRGVVAEETVILEEAPARRTAAETAIERLKMEKFDGFGGEE 185
           +QM+W+++   S       RRG+V EE  +LEEAPARR AAE   +RLKMEKFD     E
Sbjct: 125 VQMFWAEEERSSVPVENGERRGIVVEERAVLEEAPARRRAAERESKRLKMEKFDELKRAE 184

Query: 186 LGDCCVCYEELKEGEKEVNVPKTKKTYCKS 209
           +GDCCVCYEEL +  KEV+  +    Y KS
Sbjct: 185 MGDCCVCYEELNDVRKEVSRIRCGHIYHKS 213

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BLAST of HG10019385 vs. NCBI nr
Match: PHT62729.1 (60S ribosomal protein L44 [Capsicum annuum])

HSP 1 Score: 219.2 bits (557), Expect = 4.9e-53
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 194 KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 253
           KEVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 17  KEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 76

Query: 254 KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 77  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 122

[Close]
BLAST of HG10019385 vs. NCBI nr
Match: PIN00418.1 (60S ribosomal protein L44 [Handroanthus impetiginosus])

HSP 1 Score: 218.4 bits (555), Expect = 8.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 195 EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 254
           EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 21  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 80

Query: 255 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 81  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 125

[Close]
BLAST of HG10019385 vs. NCBI nr
Match: OMO65938.1 (Ribosomal protein L44e [Corchorus olitorius])

HSP 1 Score: 218.4 bits (555), Expect = 8.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 195 EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 254
           EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 3   EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 62

Query: 255 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 63  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 107

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BLAST of HG10019385 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 3.2e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of HG10019385 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-51
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of HG10019385 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.6 bits (436), Expect = 6.9e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 299
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]
BLAST of HG10019385 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-41
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 299
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]
BLAST of HG10019385 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-41
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 299
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]
BLAST of HG10019385 vs. ExPASy TrEMBL
Match: A0A2G2XZ44 (60S ribosomal protein L44 OS=Capsicum annuum OX=4072 GN=T459_33392 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.4e-53
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 194 KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 253
           KEVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 17  KEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 76

Query: 254 KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 77  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 122

[Close]
BLAST of HG10019385 vs. ExPASy TrEMBL
Match: A0A0B0PY50 (60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108478075 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 195 EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 254
           EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 6   EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 65

Query: 255 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 66  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 110

[Close]
BLAST of HG10019385 vs. ExPASy TrEMBL
Match: A0A1R3H6E5 (Ribosomal protein L44e OS=Corchorus olitorius OX=93759 GN=COLO4_30903 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 195 EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 254
           EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 3   EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 62

Query: 255 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 63  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 107

[Close]
BLAST of HG10019385 vs. ExPASy TrEMBL
Match: A0A2G9G523 (60S ribosomal protein L44 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27076 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 195 EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 254
           EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 21  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 80

Query: 255 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 81  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 125

[Close]
BLAST of HG10019385 vs. ExPASy TrEMBL
Match: A0A6A1V215 (60S ribosomal protein L44 OS=Morella rubra OX=262757 GN=CJ030_MR7G011797 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.1e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 195 EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 254
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 2   QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 61

Query: 255 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106

[Close]
BLAST of HG10019385 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 204.9 bits (520), Expect = 9.0e-53
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of HG10019385 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 204.9 bits (520), Expect = 9.0e-53
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 300
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of HG10019385 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 180.3 bits (456), Expect = 2.4e-45
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 196 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 255
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 256 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 288
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:
BLAST of HG10019385 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905732.13.5e-8379.33E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida][more]
XP_038876865.11.1e-5560.00putative RING-H2 finger protein ATL53 [Benincasa hispida][more]
PHT62729.14.9e-5399.0660S ribosomal protein L44 [Capsicum annuum][more]
PIN00418.18.4e-53100.0060S ribosomal protein L44 [Handroanthus impetiginosus][more]
OMO65938.18.4e-53100.00Ribosomal protein L44e [Corchorus olitorius][more]
BLAST of HG10019385 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q964993.2e-55100.0060S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3[more]
O232901.3e-5193.2760S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3[more]
O598706.9e-4277.6760S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3[more]
P0CQ511.2e-4177.6760S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
P0CQ501.2e-4177.6760S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
BLAST of HG10019385 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G2XZ442.4e-5399.0660S ribosomal protein L44 OS=Capsicum annuum OX=4072 GN=T459_33392 PE=3 SV=1[more]
A0A0B0PY504.1e-53100.0060S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108478075 PE=3 SV=1[more]
A0A1R3H6E54.1e-53100.00Ribosomal protein L44e OS=Corchorus olitorius OX=93759 GN=COLO4_30903 PE=3 SV=1[more]
A0A2G9G5234.1e-53100.0060S ribosomal protein L44 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27076... [more]
A0A6A1V2159.1e-5399.0560S ribosomal protein L44 OS=Morella rubra OX=262757 GN=CJ030_MR7G011797 PE=3 SV... [more]
BLAST of HG10019385 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G23390.19.0e-5393.27Zinc-binding ribosomal protein family protein [more]
AT4G14320.19.0e-5393.27Zinc-binding ribosomal protein family protein [more]
AT4G14320.22.4e-4592.39Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.80coord: 195..299
e-value: 2.4E-49
score: 168.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..242
NoneNo IPR availablePANTHERPTHR10369:SF3860S RIBOSOMAL PROTEIN L44-LIKEcoord: 176..299
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 213..287
e-value: 9.1E-34
score: 115.8
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 176..299
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 257..268
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 196..288

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019385.1HG10019385.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome