HG10019328 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019328
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 20447655 .. 20447936 (+)
RNA-Seq Expression	HG10019328
Synteny	HG10019328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTCAAGCTCAAGAAGGTATTCCTCCAAGGCCTCGGGTTAAGGTTTCATTTTGCTTAGGGTCAGAGATTCATTTGGTGAATACAGCTAATGAAGGCAATCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGAGCATTTTGAAGGAATACATAACCAAACATAATGTTCCTAATGATGTCCCGGATGAACTGGTTGAAGAAGCTTCTGAGGATGATGATGAAATCACTGAAAAGCCTCAAGTGAGGTCAAAGAAGACAAAAGTAACATAA

mRNA sequence

ATGGACGGTCAAGCTCAAGAAGGTATTCCTCCAAGGCCTCGGGTTAAGGTTTCATTTTGCTTAGGGTCAGAGATTCATTTGGTGAATACAGCTAATGAAGGCAATCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGAGCATTTTGAAGGAATACATAACCAAACATAATGTTCCTAATGATGTCCCGGATGAACTGGTTGAAGAAGCTTCTGAGGATGATGATGAAATCACTGAAAAGCCTCAAGTGAGGTCAAAGAAGACAAAAGTAACATAA

Coding sequence (CDS)

ATGGACGGTCAAGCTCAAGAAGGTATTCCTCCAAGGCCTCGGGTTAAGGTTTCATTTTGCTTAGGGTCAGAGATTCATTTGGTGAATACAGCTAATGAAGGCAATCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGAGCATTTTGAAGGAATACATAACCAAACATAATGTTCCTAATGATGTCCCGGATGAACTGGTTGAAGAAGCTTCTGAGGATGATGATGAAATCACTGAAAAGCCTCAAGTGAGGTCAAAGAAGACAAAAGTAACATAA

Protein sequence

MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNVPNDVPDELVEEASEDDDEITEKPQVRSKKTKVT

Homology

[Close]

BLAST of HG10019328 vs. NCBI nr
Match: TYK29223.1 (uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.9e-36
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD  A+E IP RPRVKVSFCLGSEIHLVNTAN+G LSEQLISMKE+SM+ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 61 PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
          PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of HG10019328 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 4.9e-36
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD  A+E IP RPRVKVSFCLGSEIHLVNTAN+G LSEQLISMKE+SM+ILKEYITKHNV
Sbjct: 7  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 66

Query: 61 PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
          PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 67 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of HG10019328 vs. NCBI nr
Match: KAA0035148.1 (uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.9e-36
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1   MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
           MD  A+E IP RPRVKVSFCLGSEIHLVNTAN+G LSEQLISMKE+SM+ILKEYITKHNV
Sbjct: 19  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 78

Query: 61  PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
           PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 79  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of HG10019328 vs. NCBI nr
Match: XP_011660264.1 (uncharacterized protein LOC105436354 [Cucumis sativus] >XP_031736764.1 uncharacterized protein LOC105436354 [Cucumis sativus] >KGN66757.1 hypothetical protein Csa_007293 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 3.5e-34
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD  A+E IP RPRVKVS CLGSE HLVNTAN+G LSEQL SMKE+SM+ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 61 PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
          PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of HG10019328 vs. NCBI nr
Match: KAG7036645.1 (hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
           MD QAQE I   PRVK SF LGSE HLVNTAN+G LSEQLISMKEESM+ILKEYITKHNV
Sbjct: 104 MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 163

Query: 61  PNDVPDELVEEASE-DDDEITEKPQVRSKKTKVT 94
           PNDVPDEL+EEASE DDDE TEKPQV+SKKTK+T
Sbjct: 164 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 197

[Close]

BLAST of HG10019328 vs. ExPASy TrEMBL
Match: A0A5A7SX16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002390 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1   MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
           MD  A+E IP RPRVKVSFCLGSEIHLVNTAN+G LSEQLISMKE+SM+ILKEYITKHNV
Sbjct: 19  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 78

Query: 61  PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
           PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 79  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of HG10019328 vs. ExPASy TrEMBL
Match: A0A5D3DZN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00090 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD  A+E IP RPRVKVSFCLGSEIHLVNTAN+G LSEQLISMKE+SM+ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 61 PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
          PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of HG10019328 vs. ExPASy TrEMBL
Match: A0A1S3B8U1 (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD  A+E IP RPRVKVSFCLGSEIHLVNTAN+G LSEQLISMKE+SM+ILKEYITKHNV
Sbjct: 7  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 66

Query: 61 PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
          PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 67 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of HG10019328 vs. ExPASy TrEMBL
Match: A0A0A0M0V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD  A+E IP RPRVKVS CLGSE HLVNTAN+G LSEQL SMKE+SM+ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 61 PNDVPDELVEEASEDDDEITEKPQVRSKKTKVT 94
          PNDVPDELVEEASEDDDEITEKPQV++KKTKVT
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of HG10019328 vs. ExPASy TrEMBL
Match: A0A6J1G9M3 (uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC111452065 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          MD QAQE I   PRVK SF LGSE HLVNTAN+G LSEQLISMKEESM+ILKEYITKHNV
Sbjct: 1  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 61 PNDVPDELVEEASE-DDDEITEKPQVRSKKTKVT 94
          PNDVPDEL+EEASE DDDE TEKPQV+SKKTK+T
Sbjct: 61 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of HG10019328 vs. TAIR 10
Match: AT1G47820.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-13
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          M+ ++   +P +  VKV F LG+E + +++     + +QL+SMKEESM ILK++ITKHNV
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 61 P-NDVPDELVEEASEDDDEITEK---PQVRSKKTKV 93
          P +DVPD+++ +  E DD+       P    KKTK+
Sbjct: 61 PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

[Close]

BLAST of HG10019328 vs. TAIR 10
Match: AT1G47820.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-13
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MDGQAQEGIPPRPRVKVSFCLGSEIHLVNTANEGNLSEQLISMKEESMSILKEYITKHNV 60
          M+ ++   +P +  VKV F LG+E + +++     + +QL+SMKEESM ILK++ITKHNV
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 61 P-NDVPDELVEEASEDDDEITEK---PQVRSKKTKV 93
          P +DVPD+++ +  E DD+       P    KKTK+
Sbjct: 61 PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

The following BLAST results are available for this feature:

BLAST of HG10019328 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29223.1	4.9e-36	88.17	uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa]	[more]
XP_008443784.1	4.9e-36	88.17	PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo]	[more]
KAA0035148.1	4.9e-36	88.17	uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa]	[more]
XP_011660264.1	3.5e-34	84.95	uncharacterized protein LOC105436354 [Cucumis sativus] >XP_031736764.1 uncharact...	[more]
KAG7036645.1	1.1e-30	82.98	hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10019328 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SX16	2.4e-36	88.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DZN8	2.4e-36	88.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B8U1	2.4e-36	88.17	uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=...	[more]
A0A0A0M0V3	1.7e-34	84.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1	[more]
A0A6J1G9M3	5.2e-31	82.98	uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]

BLAST of HG10019328 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47820.1	6.3e-13	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G47820.2	6.3e-13	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..93
None	No IPR available	PANTHER	PTHR37194	T2E6.7-RELATED	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019328.1	HG10019328.1	mRNA