HG10019326 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019326
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBromo domain-containing protein
LocationChr04: 20402556 .. 20402843 (-)
RNA-Seq ExpressionHG10019326
SyntenyHG10019326
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAGGATGAGATTTTTGTACGAGTATTTGGACCGGAGAAACACGAACGTGTTCGTGGTTATGGAGTAGGTGTTACTCATTCTGAGTTGTTTGGATCATCGTCTAACATACGCGATCTTGAGCGTCTCCTTAATGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAATTGAGGTAGAAGCACTTAAGCATCAAATGAGCGAATTAGAAAATCGTTTTGAAGATAGATTTAAAAAAATGATGGCAGAGATGCGTAAAGAATTTGTTTCTAGTTGA

mRNA sequence

ATGAACGAGGATGAGATTTTTGTACGAGTATTTGGACCGGAGAAACACGAACGTGTTCGTGGTTATGGAGTAGGTGTTACTCATTCTGAGTTGTTTGGATCATCGTCTAACATACGCGATCTTGAGCGTCTCCTTAATGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAATTGAGGTAGAAGCACTTAAGCATCAAATGAGCGAATTAGAAAATCGTTTTGAAGATAGATTTAAAAAAATGATGGCAGAGATGCGTAAAGAATTTGTTTCTAGTTGA

Coding sequence (CDS)

ATGAACGAGGATGAGATTTTTGTACGAGTATTTGGACCGGAGAAACACGAACGTGTTCGTGGTTATGGAGTAGGTGTTACTCATTCTGAGTTGTTTGGATCATCGTCTAACATACGCGATCTTGAGCGTCTCCTTAATGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAATTGAGGTAGAAGCACTTAAGCATCAAATGAGCGAATTAGAAAATCGTTTTGAAGATAGATTTAAAAAAATGATGGCAGAGATGCGTAAAGAATTTGTTTCTAGTTGA

Protein sequence

MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFGSSSNIRDLERLLNESEQRLQESEQQRKIEVEALKHQMSELENRFEDRFKKMMAEMRKEFVSS
Homology
BLAST of HG10019326 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 79/102 (77.45%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFGSSSNIRDLERLLNESEQRLQESEQQRK 60
           MNEDE FVRVFGPEKH  V GYGVGVT SELFGSSS IRD ER LNESEQRLQE EQQRK
Sbjct: 81  MNEDETFVRVFGPEKHGHVHGYGVGVTPSELFGSSSTIRDHERRLNESEQRLQEFEQQRK 140

Query: 61  -------IEVEALKHQMSELENRFEDRFKKMMAEMRKEFVSS 96
                  +EVE LK Q+SELENRFEDRF+KMMAEM K+FVSS
Sbjct: 141 EFEQQRELEVEVLKRQISELENRFEDRFQKMMAEMCKKFVSS 182

BLAST of HG10019326 vs. NCBI nr
Match: XP_008457059.1 (PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFGSSSNIRDLERLLNESEQ 51
           MN+D+IFV++FGPEKH  VRGYGVGV HSELFGSSS + DLER LNES++
Sbjct: 136 MNDDDIFVQIFGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLNESKK 185

BLAST of HG10019326 vs. NCBI nr
Match: CAB4298316.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 505 MTEDEIFVKVFGPERSSRVRGYGDGVTPKELWGPSSSSSSTVNELRRQLEESKQRQEESE 564

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   EV+ LK Q+  +E       NRFE    ++M+ M
Sbjct: 565 QRSAAEVQGLKEQLGRVEGLVSAQMNRFEGLLVQLMSHM 603

BLAST of HG10019326 vs. NCBI nr
Match: CAB4287154.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 486 MTEDEIFVKVFGPERSSRVRGYGNGVTPKELWGPSSSSSSTVSELRRQLEESKQRQEESE 545

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   EV+ LK Q+  +E       NRFE    ++M+ M
Sbjct: 546 QRSAAEVQGLKEQLGRVEGLLSVQMNRFEGLLVQLMSHM 584

BLAST of HG10019326 vs. NCBI nr
Match: CAB4267891.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 80.9 bits (198), Expect = 6.6e-12
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 552 MTEDEIFVKVFGPERSSRVRGYGDGVTPKELWGPSSSSSSTVNELRRQLEESKQRQEESE 611

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   E++ LK Q+  +E       NRFE    ++M+ M
Sbjct: 612 QRSAAELQGLKEQLGRVEGLVSAQMNRFEGLLVQLMSHM 650

BLAST of HG10019326 vs. ExPASy TrEMBL
Match: A0A1S3C480 (uncharacterized protein LOC103496828 OS=Cucumis melo OX=3656 GN=LOC103496828 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFGSSSNIRDLERLLNESEQ 51
           MN+D+IFV++FGPEKH  VRGYGVGV HSELFGSSS + DLER LNES++
Sbjct: 136 MNDDDIFVQIFGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLNESKK 185

BLAST of HG10019326 vs. ExPASy TrEMBL
Match: A0A6J5W9N9 (Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS10614 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 505 MTEDEIFVKVFGPERSSRVRGYGDGVTPKELWGPSSSSSSTVNELRRQLEESKQRQEESE 564

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   EV+ LK Q+  +E       NRFE    ++M+ M
Sbjct: 565 QRSAAEVQGLKEQLGRVEGLVSAQMNRFEGLLVQLMSHM 603

BLAST of HG10019326 vs. ExPASy TrEMBL
Match: A0A6J5VGW3 (Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45002 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 486 MTEDEIFVKVFGPERSSRVRGYGNGVTPKELWGPSSSSSSTVSELRRQLEESKQRQEESE 545

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   EV+ LK Q+  +E       NRFE    ++M+ M
Sbjct: 546 QRSAAEVQGLKEQLGRVEGLLSVQMNRFEGLLVQLMSHM 584

BLAST of HG10019326 vs. ExPASy TrEMBL
Match: A0A6J5TUZ6 (Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10825 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 505 MTEDEIFVKVFGPERSSRVRGYGDGVTPKELWGPSSSSSSTVNELRRQLEESKQRQEESE 564

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   E++ LK Q+  +E       NRFE    ++M+ M
Sbjct: 565 QRSAAELQGLKEQLGRVEGLVSAQMNRFEGLLVQLMSHM 603

BLAST of HG10019326 vs. ExPASy TrEMBL
Match: A0A6J5TV49 (Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10820 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDEIFVRVFGPEKHERVRGYGVGVTHSELFG----SSSNIRDLERLLNESEQRLQESE 60
           M EDEIFV+VFGPE+  RVRGYG GVT  EL+G    SSS + +L R L ES+QR +ESE
Sbjct: 552 MTEDEIFVKVFGPERSSRVRGYGDGVTPKELWGPSSSSSSTVNELRRQLEESKQRQEESE 611

Query: 61  QQRKIEVEALKHQMSELE-------NRFEDRFKKMMAEM 89
           Q+   E++ LK Q+  +E       NRFE    ++M+ M
Sbjct: 612 QRSAAELQGLKEQLGRVEGLVSAQMNRFEGLLVQLMSHM 650

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904040.12.7e-2977.45uncharacterized protein LOC120090445 [Benincasa hispida][more]
XP_008457059.11.7e-1274.00PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo][more]
CAB4298316.13.0e-1250.51unnamed protein product [Prunus armeniaca][more]
CAB4287154.13.9e-1250.51unnamed protein product [Prunus armeniaca][more]
CAB4267891.16.6e-1249.49unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C4808.5e-1374.00uncharacterized protein LOC103496828 OS=Cucumis melo OX=3656 GN=LOC103496828 PE=... [more]
A0A6J5W9N91.4e-1250.51Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS1... [more]
A0A6J5VGW31.9e-1250.51Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4500... [more]
A0A6J5TUZ63.2e-1249.49Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS1082... [more]
A0A6J5TV493.2e-1249.49Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS1082... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019326.1HG10019326.1mRNA