HG10019318 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019318
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CCHC-type domain-containing protein
Location	Chr04: 20264593 .. 20264826 (-)
RNA-Seq Expression	HG10019318
Synteny	HG10019318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACTTTCATTGAAGTGGATTGCGATCAAGATAACTTTTGCTGGGGGGAATTTCTCAGGATTAAAGTTCTGGTACCTTTAAGAAGAGGTATATTAATCGATTCTGGGGAAGGAAAAAAGAGTATCTTGATTCATGTTAGATATGAAAGACTTCCAGATTTCTGGTATGGGTGTAGTCGAATTGGACATTTGGCTAAAGAATGTAAATTCTTGAATTTCGAAAAAAAATGA

mRNA sequence

ATGGGGACTTTCATTGAAGTGGATTGCGATCAAGATAACTTTTGCTGGGGGGAATTTCTCAGGATTAAAGTTCTGGTACCTTTAAGAAGAGGTATATTAATCGATTCTGGGGAAGGAAAAAAGAGTATCTTGATTCATGTTAGATATGAAAGACTTCCAGATTTCTGGTATGGGTGTAGTCGAATTGGACATTTGGCTAAAGAATGTAAATTCTTGAATTTCGAAAAAAAATGA

Coding sequence (CDS)

ATGGGGACTTTCATTGAAGTGGATTGCGATCAAGATAACTTTTGCTGGGGGGAATTTCTCAGGATTAAAGTTCTGGTACCTTTAAGAAGAGGTATATTAATCGATTCTGGGGAAGGAAAAAAGAGTATCTTGATTCATGTTAGATATGAAAGACTTCCAGATTTCTGGTATGGGTGTAGTCGAATTGGACATTTGGCTAAAGAATGTAAATTCTTGAATTTCGAAAAAAAATGA

Protein sequence

MGTFIEVDCDQDNFCWGEFLRIKVLVPLRRGILIDSGEGKKSILIHVRYERLPDFWYGCSRIGHLAKECKFLNFEKK

Homology

[Close]

BLAST of HG10019318 vs. NCBI nr
Match: XP_039815364.1 (uncharacterized protein LOC120678302 [Panicum virgatum])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G F+EVD + D F  G FLR+KV +    PLRRGI+ID GEG +     + YE LPDF 
Sbjct: 85  LGEFMEVDLENDEFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFC 144

Query: 61  YGCSRIGHLAKEC 70
           Y C RIGH  K C
Sbjct: 145 YVCGRIGHTDKAC 157

[Close]

BLAST of HG10019318 vs. NCBI nr
Match: XP_039827601.1 (uncharacterized protein LOC120689378 [Panicum virgatum])

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-12
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G F+EVD + D F  G FLR+KV +    PLRRGI+ID GEG +     + YE LPDF 
Sbjct: 148 LGEFMEVDLENDVFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFC 207

Query: 61  YGCSRIGHLAKEC 70
           Y C RIGH  K C
Sbjct: 208 YVCGRIGHTDKAC 220

[Close]

BLAST of HG10019318 vs. NCBI nr
Match: XP_038710923.1 (uncharacterized protein LOC120005387 [Tripterygium wilfordii])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 28/74 (37.84%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           MG  + VD D++ + WGEFLR+++ V    PL+R +++   EG+++I + +++E+LP+F 
Sbjct: 150 MGEVVRVDLDRNGYGWGEFLRVRINVHVSKPLKRVVMVSGEEGEEAIRVGIQFEQLPNFC 209

Query: 61  YGCSRIGHLAKECK 71
           Y C  IGH+ ++C+
Sbjct: 210 YHCGMIGHVERDCE 223

[Close]

BLAST of HG10019318 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G F++VDC++  F WG  LRI+VL+    PLRRGI I+         I ++YERLPDF 
Sbjct: 152 IGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFC 211

Query: 61  YGCSRIGHLAKEC 70
           Y C  IGH + +C
Sbjct: 212 YFCGVIGHSSHDC 224

[Close]

BLAST of HG10019318 vs. NCBI nr
Match: XP_024018029.1 (uncharacterized protein LOC112090594 [Morus notabilis])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G+ + V  D    CWG+++R++V++    P+RR + I  G+G+  +   +RYE+LPDF 
Sbjct: 148 IGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKLPDFC 207

Query: 61  YGCSRIGHLAKEC 70
           YGC + GH  +EC
Sbjct: 208 YGCGKFGHGTREC 220

[Close]

BLAST of HG10019318 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.4e-11
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G F++VDC++  F WG  LRI+VL+    PLRRGI I+         I ++YERLPDF 
Sbjct: 152 IGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFC 211

Query: 61  YGCSRIGHLAKEC 70
           Y C  IGH + +C
Sbjct: 212 YFCGVIGHSSHDC 224

[Close]

BLAST of HG10019318 vs. ExPASy TrEMBL
Match: A0A803NE34 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1  MGTFIEVDCDQDNFCWGEFLRIKVL----VPLRRGILIDSGEGKKSILIHVRYERLPDFW 60
          +G F+E D D D   WGEF+R+K+L     PLRRGI ID+G   +   I  +YERL DF 
Sbjct: 24 LGGFLEHDDDDDPLGWGEFMRVKILHDINKPLRRGIKIDAGNSSEK-WIGSKYERLRDFC 83

Query: 61 YGCSRIGHLAKEC 70
          Y C R+GH  ++C
Sbjct: 84 YYCGRLGHTDRDC 95

[Close]

BLAST of HG10019318 vs. ExPASy TrEMBL
Match: W9RRS1 (CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024909 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.1e-10
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G+ + V  D    CWG+++R++V++    P+RR + I  G+G+  +   +RYE+LPDF 
Sbjct: 148 IGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKLPDFC 207

Query: 61  YGCSRIGHLAKEC 70
           YGC + GH  +EC
Sbjct: 208 YGCGKFGHGTREC 220

[Close]

BLAST of HG10019318 vs. ExPASy TrEMBL
Match: W9RBJ0 (CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024925 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.1e-10
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G+ + V  D    CWG+++R++V++    P+RR + I  G+G+  +   +RYE+LPDF 
Sbjct: 148 IGSTVSVQQDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKLPDFC 207

Query: 61  YGCSRIGHLAKEC 70
           YGC + GH  +EC
Sbjct: 208 YGCGKFGHGTREC 220

[Close]

BLAST of HG10019318 vs. ExPASy TrEMBL
Match: A0A5C7IV30 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001759 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   MGTFIEVDCDQDNFCWGEFLRIKVLV----PLRRGILIDSGEGKKSILIHVRYERLPDFW 60
           +G  +E+  D    CWG F+R+KVL+    PL+R + +   +  +  ++ ++YERLPDF 
Sbjct: 131 IGAVVELPADSRE-CWGRFMRVKVLIDISRPLKRWLRLKLSKSDEIAVVGLKYERLPDFC 190

Query: 61  YGCSRIGHLAKEC 70
           Y C R+GH+ KEC
Sbjct: 191 YACGRVGHVLKEC 202

The following BLAST results are available for this feature:

BLAST of HG10019318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039815364.1	3.2e-12	52.05	uncharacterized protein LOC120678302 [Panicum virgatum]	[more]
XP_039827601.1	7.0e-12	52.05	uncharacterized protein LOC120689378 [Panicum virgatum]	[more]
XP_038710923.1	1.3e-10	37.84	uncharacterized protein LOC120005387 [Tripterygium wilfordii]	[more]
XP_022156185.1	1.7e-10	46.58	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_024018029.1	1.5e-09	38.36	uncharacterized protein LOC112090594 [Morus notabilis]	[more]

BLAST of HG10019318 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	8.4e-11	46.58	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A803NE34	2.4e-10	47.95	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
W9RRS1	7.1e-10	38.36	CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024909 ...	[more]
W9RBJ0	7.1e-10	38.36	CCHC-type domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024925 ...	[more]
A0A5C7IV30	9.3e-10	39.73	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00175...	[more]

BLAST of HG10019318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 27..70 e-value: 6.1E-11 score: 41.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019318.1	HG10019318.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding