HG10019248 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019248
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncalponin homology domain-containing protein DDB_G0272472
LocationChr04: 19178956 .. 19179821 (-)
RNA-Seq ExpressionHG10019248
SyntenyHG10019248
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGGTAAATGTTCTTATTTGGAAAAATTCTGCGTTTGAACAATTTCTGTTTCTTGATTTGAATTCTTTTCGTTTTTTCTTTTAATTCTGTTTTCTTTCTCGCAACTGGATGTTATCTGGAATTGAAAAGTGGAAGTGGAAGTATTCATTTAACTATTTTTAAACGATGGTGATTGTTTCTGACTTCGATTTTTAGAATCCTTTTTCGACTTGTGTAGAACCGAATCGGTATTTTGTAAACCCTAATGATTCAAGTGATTGATCCCTTTTCTTTCGATTCAATTATATTAGACTAGAATCTGTTAAATCTCCACTGCAACGAAAAATATACACGTTCACATGTACATCTTTACATCCATTTCTATGCAGAAAGAATCAAATAAGAAAACAACTAAGGCCAATTTAGATTGACTTTCTAAGTATTTATAAACATTTTTTTTTGCACTTACAATTACTAATTCAAACACTTAGAAAGTCAATCCAAACGGACCCTAAATTAGAAATCTTGCTAATTTACAACTCACATAATACGTATACGGTAACATTGGTTGTGAATGTTAACCTTTTTTCTTCTTGATACACTGATCACAGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGCTAACAATTTAATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAA

mRNA sequence

ATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGCTAACAATTTAATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAA

Coding sequence (CDS)

ATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGCTAACAATTTAATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAA

Protein sequence

MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHANNLITNQEASSQEGFPSQVVPTQERGLLLEEKN
Homology
BLAST of HG10019248 vs. NCBI nr
Match: XP_038903669.1 (uncharacterized protein LOC120090199 isoform X1 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS++LNL+SVSASKNRSN+ T IDSE+KK+DS EP+SA ++SGRSKF KETSQS MH  
Sbjct: 1  MDSAYLNLESVSASKNRSNEFTDIDSENKKNDSSEPVSAKARSGRSKFLKETSQSIMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. NCBI nr
Match: XP_022941676.1 (uncharacterized protein LOC111446963 [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMH  
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. NCBI nr
Match: KAG7030955.1 (hypothetical protein SDJN02_04992 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMH  
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. NCBI nr
Match: KAG6600295.1 (hypothetical protein SDJN03_05528, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 8.4e-12
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+  NLDS+SAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMH  
Sbjct: 1  MDSACSNLDSLSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. NCBI nr
Match: XP_022992729.1 (calponin homology domain-containing protein DDB_G0272472 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+  NLDSVSAS++R N   AIDSESKKD+SGE +SASSKSGRSKF KET+QS+MH  
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDESGETVSASSKSGRSKFLKETNQSSMHGV 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. ExPASy TrEMBL
Match: A0A6J1FLR6 (uncharacterized protein LOC111446963 OS=Cucurbita moschata OX=3662 GN=LOC111446963 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+  NLDSVSAS++R N   AIDSESKKDDSGE +SASSKSGRSKF KET+QSTMH  
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. ExPASy TrEMBL
Match: A0A5A7TM27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00790 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MH  
Sbjct: 1  MDSACLNLDSVPTTENHSNEFIAVDSQSKKDDSGEPVSAISKSGRSKFLKETTQSAMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. ExPASy TrEMBL
Match: A0A6J1JYB3 (calponin homology domain-containing protein DDB_G0272472 OS=Cucurbita maxima OX=3661 GN=LOC111488980 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+  NLDSVSAS++R N   AIDSESKKD+SGE +SASSKSGRSKF KET+QS+MH  
Sbjct: 1  MDSACSNLDSVSASEDRGNNFIAIDSESKKDESGETVSASSKSGRSKFLKETNQSSMHGV 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. ExPASy TrEMBL
Match: A0A1S3BXZ4 (LOW QUALITY PROTEIN: uncharacterized protein LOC103494795 OS=Cucumis melo OX=3656 GN=LOC103494795 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MH  
Sbjct: 1  MDSACLNLDSVPTTENHSNEFIAVDSQSKKDDSGEPVSAISKSGRSKFLKETTQSAMHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

BLAST of HG10019248 vs. ExPASy TrEMBL
Match: A0A6J1D550 (uncharacterized protein LOC111017696 OS=Momordica charantia OX=3673 GN=LOC111017696 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHAN 60
          MD    N+DSVSAS+ R+ ++TA++SESK DDSGEP+SASSKSGRSK SKET+QST+H  
Sbjct: 1  MDLGCSNVDSVSASEKRAREITAVNSESKNDDSGEPVSASSKSGRSKVSKETNQSTIHGL 60

Query: 61 NLITNQ 67
          N  T+Q
Sbjct: 61 NKFTSQ 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903669.12.2e-1269.70uncharacterized protein LOC120090199 isoform X1 [Benincasa hispida][more]
XP_022941676.13.8e-1272.73uncharacterized protein LOC111446963 [Cucurbita moschata][more]
KAG7030955.13.8e-1272.73hypothetical protein SDJN02_04992 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600295.18.4e-1271.21hypothetical protein SDJN03_05528, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022992729.13.2e-1169.70calponin homology domain-containing protein DDB_G0272472 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FLR61.8e-1272.73uncharacterized protein LOC111446963 OS=Cucurbita moschata OX=3662 GN=LOC1114469... [more]
A0A5A7TM271.5e-1166.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1JYB31.5e-1169.70calponin homology domain-containing protein DDB_G0272472 OS=Cucurbita maxima OX=... [more]
A0A1S3BXZ41.5e-1166.67LOW QUALITY PROTEIN: uncharacterized protein LOC103494795 OS=Cucumis melo OX=365... [more]
A0A6J1D5501.0e-1065.15uncharacterized protein LOC111017696 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019248.1HG10019248.1mRNA