HG10019246 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019246
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Location	Chr04: 19173523 .. 19175233 (+)
RNA-Seq Expression	HG10019246
Synteny	HG10019246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAACGACAGCCACTCGACCAACAACATCCACTTGATCCACAATCGCAATCATCACAACCTCCAAGAGAAGATATGATTGCATATGTGATGGCTTTGGAAGCTGCTCTGCTTCCATGCTTGCCTGCAAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGGTCAGTAACTGATCCTTGTGTAATTAGATTCTGAAAAAACATTGTTAAACTAGTGTTTGGGCGGTTACCTTTATACATTATTGTATCTTCTACCCTACCATGTTTCTCCATATGATATGGTCTCTTGAATCAAATAAGTTGTTTTTTCTTTTCTTTTTGGGGGTGCAATTGTGCTTAATAACAATTTTGCATGAATGTTAATCTAAAGTTTCGGTCACTATGGGTCTTCATAGTGCGAGCTCTTGTTTTTTGTGTATTTTATTTACTATTCATGATGGTTTCGCAGTTTTTTATTATTGACTAGAAAAATAAAGTGTTGCATAATGGTTATTGGACCGTGTTATAATTAATTAGGATGAAGAGCAACTAGTAGATTTTATTTTATTTTGTTTTTTTTTAGAAGAGAAACTTGTAGATGCAGCAAACAATAAATTGGTGCAAAGAGTGACAGTTCATTGACCATTGTTAACTTTAAAGACAGGGGGTGGGTTGGATGCTGAACCGGTGTTTGAGTTGTAGATTTGTCAAGCATGAGGTTTGTAAGAATAACCCATGGGTTTTGACATTATCCTAAGCACCACCCCAGATCTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGTGGGGTGGTCCTAAACCTGCACCCCGAACAAACTTGTTAAATCCTCCACTTAAACGTTTGGCTTAATATTTGTAGGTTTAAGATGCCAAGCCTATGCCTCAAATGACCCTCAAGACTATTCTTGAGTTTCTTTCTTATTGGAGGAGAGCCAAAGGAGGCCTACACTAGCATTTGTCCCAGAACTTTAACTATGTTTAAACTACCAGCCTACAGATCAATTCTAAAATAGTCAACTATTGTTGTCCCCTGCTTTGTATTAGAAACGATAATGTAATTACACAATTGGTTGCATACGAATGAGTGCTACCTTGCTTGCAGCATTGAGCACAGTTCCCAGACCCTATGCAAAAACAAATTCCCCGGTGATTGGATGTTTTATGTGGATGTTTCCATTAATTTGTTGTAATTATGTGGAGTGGAAGTGACGTTTAGATCTAGAAGTAGCCATAAGTGTCTGCAATCTGCAACTCACTTAGGCAAGCCGAGCATTGAACTGATATGTCTGTGGTTAGGTGTTTGTAAACAGTGAAGAAAATGATAACCTGTTTTGTTATTGCTTCAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAACGCGAGGATCAACCAACCAAAGTGGAAACACTTAGAAAGGTAAGCACTTTTTTGGTTTTTCCAGTTCAAAGAGGGACTCTCTTTTATGATAAATGTAGCTATTCTTTTTATGTAATATTTGTCATACTTCCCATCAGGAGATATCTGCCATTGAGGAGGAATTAAAGTTAAAGAATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACCAACCTAACAATGAGTTAGAGAAGGTTTAA

mRNA sequence

ATGGCTGAACGACAGCCACTCGACCAACAACATCCACTTGATCCACAATCGCAATCATCACAACCTCCAAGAGAAGATATGATTGCATATGTGATGGCTTTGGAAGCTGCTCTGCTTCCATGCTTGCCTGCAAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAACGCGAGGATCAACCAACCAAAGTGGAAACACTTAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGTTAAAGAATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACCAACCTAACAATGAGTTAGAGAAGGTTTAA

Coding sequence (CDS)

ATGGCTGAACGACAGCCACTCGACCAACAACATCCACTTGATCCACAATCGCAATCATCACAACCTCCAAGAGAAGATATGATTGCATATGTGATGGCTTTGGAAGCTGCTCTGCTTCCATGCTTGCCTGCAAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAACGCGAGGATCAACCAACCAAAGTGGAAACACTTAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGTTAAAGAATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACCAACCTAACAATGAGTTAGAGAAGGTTTAA

Protein sequence

MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV

Homology

[Close]

BLAST of HG10019246 vs. NCBI nr
Match: XP_038904970.1 (mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904972.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904973.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904974.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPLDQQHPLDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPLDQQHPLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLKN+IIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPNKVETLRKEISAIEEELKLKNEIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQLD+ NNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >KAA0044351.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa] >TYK29480.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+KNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLK+QLD+ NNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. NCBI nr
Match: XP_004152267.1 (mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_014841 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-64
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQP+DQQH LDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+KN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQLD+ NNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >KAG6576925.1 Mediator of RNA polymerase II transcription subunit 28, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014951.1 Mediator of RNA polymerase II transcription subunit 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.5 bits (641), Expect = 4.2e-63
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLK+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQLD+ NNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-62
Identity = 129/141 (91.49%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MA+RQP+DQQH LDPQ QS Q PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLKNDIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQL + NNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. ExPASy Swiss-Prot
Match: Q9LFA5 (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-37
Identity = 80/118 (67.80%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 25  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQ 84
           ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+
Sbjct: 39  EDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLK 98

Query: 85  REDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV 142
           RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  +K +K+Q+++  +ELEKV
Sbjct: 99  REDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDELEKV 156

[Close]

BLAST of HG10019246 vs. ExPASy TrEMBL
Match: A0A1S3BZ89 (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+KNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLK+QLD+ NNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. ExPASy TrEMBL
Match: A0A5A7TRZ8 (Mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00780 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQH LDPQSQSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+KNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLK+QLD+ NNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. ExPASy TrEMBL
Match: A0A0A0KT19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQP+DQQH LDPQ QSSQ PREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+KN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQLD+ NNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. ExPASy TrEMBL
Match: A0A6J1JAT8 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=3661 GN=LOC111482804 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLK+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQLD+ NNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. ExPASy TrEMBL
Match: A0A6J1E897 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=3662 GN=LOC111430779 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQHPLDPQSQSSQPPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQPLDQQ+ +DPQ QSSQ PREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLK+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDQPNNELEKV 142
           EGWKKDLKDQLD+ NNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of HG10019246 vs. TAIR 10
Match: AT3G52860.1 (unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-38
Identity = 80/118 (67.80%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 25  EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQ 84
           ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+
Sbjct: 39  EDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLK 98

Query: 85  REDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGWKKDLKDQLDQPNNELEKV 142
           RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  +K +K+Q+++  +ELEKV
Sbjct: 99  REDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDELEKV 156

The following BLAST results are available for this feature:

BLAST of HG10019246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904970.1	3.5e-65	95.74	mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_0...	[more]
XP_008454378.1	2.9e-64	95.04	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]...	[more]
XP_004152267.1	6.5e-64	93.62	mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN527...	[more]
XP_022922953.1	4.2e-63	92.20	mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_...	[more]
XP_022149222.1	8.0e-62	91.49	mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]	[more]

BLAST of HG10019246 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFA5	4.1e-37	67.80	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O...	[more]

BLAST of HG10019246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZ89	1.4e-64	95.04	mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G...	[more]
A0A5A7TRZ8	1.4e-64	95.04	Mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo var. maku...	[more]
A0A0A0KT19	3.2e-64	93.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1	[more]
A0A6J1JAT8	2.0e-63	92.20	mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E897	2.0e-63	92.20	mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=...	[more]

BLAST of HG10019246 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52860.1	2.9e-38	67.80	unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..141
None	No IPR available	PFAM	PF11594	Med28	coord: 30..125 e-value: 2.3E-18 score: 66.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR39117:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141
IPR034456	Mediator of RNA polymerase II transcription subunit 28	PANTHER	PTHR39117	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019246.1	HG10019246.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex