HG10019233 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019233
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 19032450 .. 19034640 (+)
RNA-Seq Expression	HG10019233
Synteny	HG10019233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAAAACAAGGTTTCTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCCACAGCCATCGTGGATGAGACGATTCAGCTCCCGGCCGACGGTGGAGCGAGTTATTACGGTACGCCGCCGCCTCCGAGAGTATGCCCTGTTATGATATTACCATGCAAAACTGACTCTGAGTGTTCTCCATGCTATTGTGTCAATGGCTCTTGCATTTGAAAAGCAAAAAGAAAAGGAAGATCAAGAGAAGAAGAAAGTTTGTCATTAGTATTGATGTTTTCATATTGTATTTGTGTTACTTTCTTTCTTTTCTCTTATGTTAATGCAGAATAAAACTACCTTGGCCCTTCTTGTTAAAGTGCAATATTAATGAAGTTTCGTATTTATGTCCGTTGAGTTATACTAACGTGGATTACTATTATATTTATTTAGTCTTTTAAATAGTTTCATTATTATGTATGCTATTAGCTCGTTAATTTCATGATTATGTACGTCACGCTTTTTGTTGAAACTAACTAGAGCTACGTAATCTTTAAAAGGAAAAAACTATTGTGCAGCCTTCTACTACACTCAATTAAAAGGTCTGTCACGTGACAGTTTGTTAAAAAAAATTAAAAAGTTACATTTTTTTATGTGTGTAGAAAAAGGGGAGTATAGACTTAAGTGTCGTTAGTATTGCTCATCTTTAAATATTATACATCAATGGCAGATTCAGAATATTACTTTAGGTGGGCTCTATATATTAATTTATATTTAAATACTATTTTGAACTTTTAATTATGAATAAACTAGTATTCATATATTATTGCGGATATGAGTAGGTATAAGTTAAAATCAAATGATGTATATATATAAGCGAGCAAACTTGGAATGTATTCAAAGTCAATATTGGTTAGTATAGGCCATTTTAGGACTTCTCAAAAATTGAGTACTAACCAAAACAATGTTAATGAAAACGTATATATGTATATATGATGAGTTAATAGAGCACTCATACCAAATTATATTATCAAAATTTAGTATTAATTAATTAGAGATGAAATGATTTTTTAGGGGTTTAAATTTAGGACCACCTCCTATTTCGATACTAAATTTTAAATTACCAATTAACCTAAAAGTTTAAACATATAGATTATAAGATAAATTTAATATTATAGCAATAATTTAACAATTTTGTTGTTACACTCAAAGTAGGTGTACGAAAGGACAGCAGATTAGAAAAAAGAATTTGAAAATAGGGTATGCTTTTGGAGCAGTTGAGATTAGAGTAAAACTATGGAGATATTATTTTAAGATGAATTCTCTTTTTTCAGCAACCTCATCGTATTGATAAATAAGAATTATATAATAAATGACAAAATATATAGGATTTTTAAATATAAAAAAAAATGTGCTAAACTATTTACAAATATAGAAAATTTGTACCGTCTATTACTGATAGACTACGATAGAATTCTATCGCTTGAGCGATAGAATTTATTTGTTTGAGCGATATAAAGTAATAGAATTCTTTCACGACCTATCACATATAGAAAATGAAATGTTTCTATATTTGTAAATAGTTTAATATTTTTTTCTGTTTAGAGTAATTTCTCAAATATATATCTATCATTAATTAATAATAACAATATATAATAAATTTATTAGATTTTAATGTGGTGTTAGGATTCGAAAAAAATGATTTCGTATAATTTTATAAGATGGAAATGAATTATTTCAAATTCCTATCTGTACATTTGGAATCATGAAAATTATTGGGTTTTTTTTTTAATACCACGAAAATGAAAAAGATGGTAAGATAGATTTTACTATTTTGTCCTTGTAATTAATTTTCGGAATAATTGTAGAAAACCTATATTAAAGGTTCAAAATGGTAAATGACCCCGTTTTTTAAAGAAAAATGTCAAATGACCTTTTGCTGAACTCATCAACAAGTGAATTTACGAATTTGCACTTTCTTTTTTCCTCCCTTCTTCACGATTTCCTTTGTCTTCTCTGGTGATGTTCTGCAGCTCCCAGCACGATTTTCTTCTTCTCTGGTGAAGTGTTTCTTCTCTGTGACGCTGCAACTCCAACCAACGATGTGTTGCACCGACCAGCTCTACCCTGCAACTCCGACCAACGTTGCACAACCAGAGTGAGAGAGAGTGAGACTGAGAACAAGACGAGAAGTAGGAGGTGA

mRNA sequence

ATGGAGATGAAAAACAAGGTTTCTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCCACAGCCATCGTGGATGAGACGATTCAGCTCCCGGCCGACGGTGGAGCGAGTTATTACGCTCCCAGCACGATTTTCTTCTTCTCTGGTGAAGTGTTTCTTCTCTGTGACGCTGCAACTCCAACCAACGATGTGTTGCACCGACCAGCTCTACCCTGCAACTCCGACCAACGTTGCACAACCAGAGTGAGAGAGAGTGAGACTGAGAACAAGACGAGAAGTAGGAGGTGA

Coding sequence (CDS)

ATGGAGATGAAAAACAAGGTTTCTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCCACAGCCATCGTGGATGAGACGATTCAGCTCCCGGCCGACGGTGGAGCGAGTTATTACGCTCCCAGCACGATTTTCTTCTTCTCTGGTGAAGTGTTTCTTCTCTGTGACGCTGCAACTCCAACCAACGATGTGTTGCACCGACCAGCTCTACCCTGCAACTCCGACCAACGTTGCACAACCAGAGTGAGAGAGAGTGAGACTGAGAACAAGACGAGAAGTAGGAGGTGA

Protein sequence

MEMKNKVSLVAMVVVMVVMAQSATAIVDETIQLPADGGASYYAPSTIFFFSGEVFLLCDAATPTNDVLHRPALPCNSDQRCTTRVRESETENKTRSRR

Homology

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BLAST of HG10019233 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.4e-04
Identity = 39/84 (46.43%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 1  MEMKNKVSLVAMVVVMVVMAQSA--TAIVDETIQLPADGGASYYAPSTIFFFSGEVFLLC 60
          MEMKNKV+LVAMVVVMVVM +SA  TA +DE I+LP +G ASYY                
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYY---------------- 60

Query: 61 DAATPTNDVLHRPALPCNSDQRCT 83
              P   V     LPC +D  C+
Sbjct: 61 -DTPPPPRVCPIMILPCKTDSECS 67

The following BLAST results are available for this feature:

BLAST of HG10019233 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019233 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	7.4e-04	46.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]

BLAST of HG10019233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019233.1	HG10019233.1	mRNA