HG10019232 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019232
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Radical SAM superfamily protein isoform 1
Location	Chr04: 19017171 .. 19017470 (-)
RNA-Seq Expression	HG10019232
Synteny	HG10019232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCATAACTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTCTTGACCAATGAAGAGTCGTCGCACCGACGAACACGATCGGATTTTCAGCCACCGACGTTTGAGTTCTCGAACCAACGATCGACACATGAGTTAACACATTCTCGTAGCGTTAACAAAGGCGCCTTTGAATTTGATTTCTCTTCTTATCCTAGTCAGGTTTCAAATAAGCCTACTTATTATGTTAATCCTCCTCGTTAA

mRNA sequence

ATGGAAGGCTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCATAACTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTCTTGACCAATGAAGAGTCGTCGCACCGACGAACACGATCGGATTTTCAGCCACCGACGTTTGAGTTCTCGAACCAACGATCGACACATGAGTTAACACATTCTCGTAGCGTTAACAAAGGCGCCTTTGAATTTGATTTCTCTTCTTATCCTAGTCAGGTTTCAAATAAGCCTACTTATTATGTTAATCCTCCTCGTTAA

Coding sequence (CDS)

ATGGAAGGCTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCATAACTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTCTTGACCAATGAAGAGTCGTCGCACCGACGAACACGATCGGATTTTCAGCCACCGACGTTTGAGTTCTCGAACCAACGATCGACACATGAGTTAACACATTCTCGTAGCGTTAACAAAGGCGCCTTTGAATTTGATTTCTCTTCTTATCCTAGTCAGGTTTCAAATAAGCCTACTTATTATGTTAATCCTCCTCGTTAA

Protein sequence

MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLTNEESSHRRTRSDFQPPTFEFSNQRSTHELTHSRSVNKGAFEFDFSSYPSQVSNKPTYYVNPPR

Homology

[Close]

BLAST of HG10019232 vs. NCBI nr
Match: XP_038905929.1 (uncharacterized protein LOC120091851 [Benincasa hispida])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 87/109 (79.82%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL-TNEESSHRRTRSDFQPPTFEFSNQ 60
           MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL TN+ESSHRRTRSDFQPP  EFS+Q
Sbjct: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLITNDESSHRRTRSDFQPPALEFSDQ 60

Query: 61  RSTHELTHSRSVNKGA----------FEFDFSSYPSQVSNKPTYYVNPP 99
           RSTHEL HSRSV+KGA          FE  FSSYP QV+NKPTYY NPP
Sbjct: 61  RSTHELMHSRSVSKGAFGSSTRPSYGFESGFSSYPGQVTNKPTYYGNPP 109

[Close]

BLAST of HG10019232 vs. NCBI nr
Match: KGN52765.1 (hypothetical protein Csa_015267 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 4.6e-32
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL--TNEESSHRRTRSDFQPPTFEFSN 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLL   N+ESSHRRTRSD+QPPTFEF +
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSTHELTHSRSVNKGA----------FEFDFSSYPSQVSNKPTY-YVNPPR 100
           QRST ELTHSRSVNK A          FE +F SY  QVSN+P Y Y NP R
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of HG10019232 vs. NCBI nr
Match: KAG6576920.1 (hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 8.7e-31
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLTNEESSHRRTRSDFQPPTFEFSNQR 60
          MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLTN+ESSHRRTRSDFQPP FE+ +QR
Sbjct: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQPPRFEYLDQR 60

Query: 61 STHELTHSRSVNKGAFEFDFSSYPSQVSN 90
          S HEL HSRSV+KGAF    SSY  QVSN
Sbjct: 61 SGHELMHSRSVSKGAFG---SSYAGQVSN 86

[Close]

BLAST of HG10019232 vs. NCBI nr
Match: KAG7014945.1 (NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 8.7e-31
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLTNEESSHRRTRSDFQPPTFEFSNQR 60
          MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLTN+ESSHRRTRSDFQPP FE+ +QR
Sbjct: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQPPRFEYLDQR 60

Query: 61 STHELTHSRSVNKGAFEFDFSSYPSQVSN 90
          S HEL HSRSV+KGAF    SSY  QVSN
Sbjct: 61 SGHELMHSRSVSKGAFG---SSYAGQVSN 86

[Close]

BLAST of HG10019232 vs. NCBI nr
Match: KAA0044340.1 (putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL--TNEESSHRRTRSDFQPPTFEF-S 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLL   N+ESSHRRTRSD+QPPTFEF  
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  NQRSTHELTHSRSVNKGA----------FEFDFSSYPSQVSNKPTY-YVNPPR 100
            QR + ELTHSRSVNK A          FE +F SY  QVSN+P Y Y NPPR
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of HG10019232 vs. ExPASy TrEMBL
Match: A0A0A0KT06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL--TNEESSHRRTRSDFQPPTFEFSN 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLL   N+ESSHRRTRSD+QPPTFEF +
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSTHELTHSRSVNKGA----------FEFDFSSYPSQVSNKPTY-YVNPPR 100
           QRST ELTHSRSVNK A          FE +F SY  QVSN+P Y Y NP R
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of HG10019232 vs. ExPASy TrEMBL
Match: A0A5A7TM95 (Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00650 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.5e-31
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL--TNEESSHRRTRSDFQPPTFEF-S 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLL   N+ESSHRRTRSD+QPPTFEF  
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  NQRSTHELTHSRSVNKGA----------FEFDFSSYPSQVSNKPTY-YVNPPR 100
            QR + ELTHSRSVNK A          FE +F SY  QVSN+P Y Y NPPR
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of HG10019232 vs. ExPASy TrEMBL
Match: A0A7J7HFZ0 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009777 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.9e-17
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLL----TNEESSHRRTRSDFQPPTFEF 60
          MEGLIP L +A+KKQ+P H YR  S GS+RSYHLL    + E SSHRRTRS+FQPPT +F
Sbjct: 1  MEGLIPMLINALKKQRPHHAYRGLSEGSNRSYHLLMAPDSREGSSHRRTRSEFQPPTVDF 60

Query: 61 SNQRSTHELTHSRSVNKGA 76
           +QRST E +HSRS N+G+
Sbjct: 61 LDQRSTLEFSHSRSFNRGS 79

[Close]

BLAST of HG10019232 vs. ExPASy TrEMBL
Match: A0A2N9EKL5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7298 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.9e-17
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLTNEE----SSHRRTRSDFQPPTFEF 60
          MEGLIP+L HA+KKQ+P+++YR  S GSSRSYHLL   +    SSHRRTRS+FQPPT EF
Sbjct: 1  MEGLIPFLLHAVKKQRPQNSYRCLSEGSSRSYHLLNVADSLSGSSHRRTRSEFQPPTMEF 60

Query: 61 SNQRSTHELTHSRSVNKGAFEFD-------FSSYPSQV 88
           +QRS HE   S SVNK +             SYP+QV
Sbjct: 61 VHQRSDHEYIRSSSVNKNSTPTSAMGSGPKMGSYPTQV 98

[Close]

BLAST of HG10019232 vs. ExPASy TrEMBL
Match: A0A6P6AFC0 (uncharacterized protein LOC111309019 OS=Durio zibethinus OX=66656 GN=LOC111309019 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.9e-17
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLTN-------EESSHRRTRSDFQPPT 60
          MEGLIPYL  AM+KQKP H YRS S+GSSRSYHLL         E SSHRRTRSDFQPPT
Sbjct: 1  MEGLIPYLIRAMRKQKPSHRYRSMSMGSSRSYHLLIGQPQQESVEGSSHRRTRSDFQPPT 60

Query: 61 FEFSNQRSTHELTHSRSVNKGAFEFDFSSYPSQVS 89
           EF  QRS  +   ++S N G+      +YPS+V+
Sbjct: 61 VEFFEQRSGLDFLSAKSYNNGS----SVNYPSRVA 91

[Close]

BLAST of HG10019232 vs. TAIR 10
Match: AT3G19615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKK-QKPRH-NYRSQSVGSSRSYHLL--------TNEESSHRRTRSDFQ 52
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L        + + SSHRRTRSD+ 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

The following BLAST results are available for this feature:

BLAST of HG10019232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905929.1	1.6e-37	79.82	uncharacterized protein LOC120091851 [Benincasa hispida]	[more]
KGN52765.1	4.6e-32	73.21	hypothetical protein Csa_015267 [Cucumis sativus]	[more]
KAG6576920.1	8.7e-31	83.15	hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014945.1	8.7e-31	83.15	NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. ...	[more]
KAA0044340.1	1.1e-30	71.68	putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 p...	[more]

BLAST of HG10019232 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019232 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT06	2.2e-32	73.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1	[more]
A0A5A7TM95	5.5e-31	71.68	Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A7J7HFZ0	5.9e-17	63.29	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009777 PE=4 SV=1	[more]
A0A2N9EKL5	5.9e-17	56.12	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7298 PE=4 SV=1	[more]
A0A6P6AFC0	5.9e-17	57.89	uncharacterized protein LOC111309019 OS=Durio zibethinus OX=66656 GN=LOC11130901...	[more]

BLAST of HG10019232 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19615.1	4.5e-09	60.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..67
None	No IPR available	PANTHER	PTHR38370	BETA-1,4-XYLOSIDASE	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019232.1	HG10019232.1	mRNA