HG10019169 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019169
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA replication complex GINS protein PSF2
Location	Chr04: 18094698 .. 18099088 (-)
RNA-Seq Expression	HG10019169
Synteny	HG10019169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGTCAATCAGATCCTCACGTGAACCTATTTTCTGCAGAAGAGGTATCCCTTTCTTGCTCTGTCTAAATGATTAAAGCATTGCTAAATGAAATTGATCAAAATTGTTTTGGAAATTCTTGTCCAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCTGCATTTGATCTGTGTATGTCTTCTGTTCATGTTGAACATATGGTATCAGATTTTTTGCAAGGATGGTTTAGTTTTCGATTGTTGTGTGTTTTTGGTCTTTTCTTCCTGCTAACATTGCTGAATGTTTTAATTTCCTTGTAATTTCCAATAGGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTAGGTAAGTTCTATTTGTTAAGTTTCTTTTCTGTGTCTCATAATCTGTGAGCTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTAAATAATAATAATAATAATAATGATAACTAGTAAATAAATAAACAAAATCTTAATCTAATGCCATTACTAGTCTGCATACCCACTTGAAGGATGTAAGATCTATAGATGTAGAATTTGTGATGGCTTTGCTGATTAATATTTGAGAGATCTTAATGTTATAACTCCAAGTATTTAGGAATTTGTGGTGTTGAGCAATCCTCCTATCAAGGACCATGATTCTATCAAGGACCACTATTCTATAGGAATGATCTCTTATAGTTGGAGCCGCTTCTTATAGAGGGAGTCTCCCCCATTTTGTGGGCTTGTTTTTTGTATGCCCGTGTATTCTTTCATTTATTTCTCAATGAAAGTCATTATTTTCATATAAAAAAACTATGGTTTCAAATTTGAAACATAAGCTCCCGCTTCCACGTGAATGGAAATAAAATCCGTGCTTTACACAATAGATATCCTTCCATCGACCTTGCAAACCATAATGTTGATTCACTGGACGAAAGCACTAAGCAAAAATGTTTTAGGGGTTGGGTTGGGTTTTATCTTTGATTTTAGGTTTTTTGGACATACGTGAAGGAGACTGTTAGGATACCACCTAACAAGGGAACAATCATGAACACACAAAAAACTCAAGAACACTCAAATATGGAAATATGCTGTAATATCATAAGAAAAGTAACAAGATAACCTAGCCTTTCGAGAGCGCAAAGGAAATCCCACAAAATTCTTCACACCTCAAGCCTCACTCTCTCCTACTATTTATAACCTAAAAGACCTAACAAACTTATAGCTAAAATACTAATATGTCCCTTCTAATAACCATACTAATTATCCTAAGATAACCATAACTAGGGGTCTTACATGGACATAGTCAAAGGAAAACCTAATCAATTTACAATGCAATGGTGCAGCTGATGTTAGCTTGTTAATTTTCTTTACAACTCATAATATCAAAAATATTTGAAAGATATTGAGATATTGAGATATGGTGTCCCTGTGGCTGCAACCTTGCCTTTTTGCTAATTTTTTATTTTTATTCTTTTTACTTTTTCCCTTTCTCATTCAATTTTCTTCAACTTCCTTGGTTATCCATTGATTTCCCTTCTCCAGCCTTCTTGTTCACCATCTTTGTTGACACCGAAAATAATGCCAACAGTAGATTTGTATTCTTGAGGAAGAATGGCCTCAGTATCCTGTACGAGAAGCAACACTGAACACTGGTGTGGTGTTAAGCCACGTACACTCTGGTGCTCAAGTTAGAATCAGGTTCTAAAATGATTTAATCAATTGAAAAAGAGTCTATTTTTTGTATGCCTTTCTCTAGCCGTAGCTCATCGGATATATAGGACTCTCATTCCGTAACCGAAACTTGGACGACCATTCGTCTCTCAAATGACTCTTAGACTCCTTAATCGTTACTCACTCAAGCCATCACTAGAGCCGTTATCTAATTACGACCCTTAATGTGCTCGAATCTTAAGTAACTTTTAATGTCTGGTTAATGGTTATTTTTTTTTGGTAACTCTTAATGTTTGGTTAACGGTTATCAATCAAGCCACGATCAAAATTATTACTTATTCATAACTTTTTAATACAATCAAACTTATTTAAAAAACTTAGCTAATGATAATTGAAGTCATCACATTTTGAATTCCTTAAGATTAATTACCTCGAATTCAGTTACACGACCTGAACCTCAACTTTCTCTTGAGCCAAATTAATTAGAATGAGGTCCTCATGTACCAAATAATGGTGCAAGTGGACCAACAAACTAGCATGGCTATGCATGGTTAAAGCCATGCAAAACCATGCCTGGCTTGCATGGCTAAAGCCATGCAACATCAACACTAAAGCCCCAAGTGTGGGCTCTTTTTCTATATGATTGCCAACCCCTTTATCCAACTTGTATTTTACTTATCGACCCCTTTTTCCTTCCTCTTCTTTTACTTGATCTCTCATGGGATCAACTTTTTAGTTCTTGGGTTGGTAAGTGCCGACCTCACATCTTTGCCCGGTCGCCCTTTAATGCGTCTAGCCCAATGTTCATTTTCATCCCAAAAGGGATTTAACTCATTTGGTGATCTTTATAGAAGTCGATTCTTATCGGGCCTAATTGAATTTAGAGTTTACTTGACCTATATTGGGTTAATAATTATCAAATATTGTCAACCTTATTCTGGTCTTAATTTATCCATATCTAAATTTACCCTCTACAGTCGTGTTGCTCTCGAGCTAGGCTCGGTTTAGTGTTCAGTTTGAGCCTAGTTCGAGAGCTCTTATTCAACTGTAGTGCTAGCACTTCTTTACAATCCCAAAATTTCTACTATTTCAAATTCTACTTTGCTAATTCCTTGTTTTTCGTGCCAAGTTTTCTTATAAAAGGTCTTAACTTATCACCCCATTCACATTGCACATTCCAACCTTCATCCATATTTCTCAAGGTAAATTTTCTATGTAGCTTATCTTTGTTCATGAAGAACATTCCAGCCTTTAGATTCTAGAGTCCACATGTCGTCTAATCCCGACGATGTAGATTTCGTTCCCAACCAAAGGCCATGAAACTAAATTCGAAGTGGACAGGGGCTCTATAACAAAGAGCTAAACACTCGAGTCTTTCCCTCAACTCCACTAACTACAATTATTCTGAATTCGCTTAGAAAGAAGTTTAACATTCTTGACTCTATTCAGATGAGAATTCCTTCCTTAGATGAGGATCCATCTAACCCACCTTTGAGAGTTGTTTTTTGTCCTCTAATGGTTAATTATGGCGTTGGGCTTCCTTCCCATAATTTTATCCAACAATTCTTAGCTTATGTAAATGTAGCTCCTTTCAATTATTTTCGAACTCATACTGTCTGCTCTTAGGTTCCTACGTTCTTTGGCTTCAACTAGAGAATTCAAATCCCATTTCAGTGGAGGAATTTAAAATCAATTTTTATTATATTAGTACTTGGGAATGAAATCCTATCGTTCCTTCATTTTTGGTTTTGACCGAGTTCAGGACCTTCAATAAGTCTCTCACATGTTTATTCGGTTGAAACCAGCCTTTTACGACTTACTATAATAATTTTCTTTGCTTTGTAACAGTTGACCACTTTTTTAACGCAGCTGCCACCTTTTGAGACTCAGGTCATACTAACTCGATACGTTCATATCACTTCTCTAGTTTCACCTTGAATAACTATCAAAAGTTACTTGGGAGCTTTATTTGACGCCTCTTTTTTGTTTCTTGTTCTTTTTAGAAATGACTCCTAAGAAGTCCATGCGCTAAAGAATGATTGCCAAACTGGGGATTGACGCATCCACTTCTAACGTAGCTGCTACCTTTTGAGACTCAGGTGATACTAACCCAATAGGTTCATATCACTTCTCTAATTTCTTTTAGAATAGCTATCCAAAGTTACTTGAGAGCCTTAGCTAATGCCTCTTTTTTGTTTCTTGTTCTTTTTAGAAATGGCTCCTAGGAAGTCCATGCGTTAGAGAATGATTGCCGAACTAGGGATTGGCGGATTCACTTATAACGCAACTGCCACTTTTCGAGACTTGGGCCATACTAACCTGATAGGTTCATATCACTTCTCTAATTTCTTCTTGAATAGCCATCAAAAGTTACTTGGGAGCTTTCTCTAACGTCTCTTTTTTGTTACTTGTTCTTTTTAGAAATGACTCCCTGGAAGTCCATGCGCCAGAGAATGATTGTCGAATTGGGGATTGGCACATCCACTTCTCATGCTCCTTCTACTGACTCAATTCCAATAATTTCTTCTATGGGCGCTCCAACCTGGATTCACCCAATCCATGTTTCATTTGAAGAGCCACCTTCTCGATGCTCATGCCTCTAA

mRNA sequence

ATGGCTGGTCAATCAGATCCTCACGTGAACCTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCTGCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTAGAAATGACTCCCTGGAAGTCCATGCGCCAGAGAATGATTGTCGAATTGGGGATTGGCACATCCACTTCTCATGCTCCTTCTACTGACTCAATTCCAATAATTTCTTCTATGGGCGCTCCAACCTGGATTCACCCAATCCATGTTTCATTTGAAGAGCCACCTTCTCGATGCTCATGCCTCTAA

Coding sequence (CDS)

ATGGCTGGTCAATCAGATCCTCACGTGAACCTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCTGCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTTTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTAGAAATGACTCCCTGGAAGTCCATGCGCCAGAGAATGATTGTCGAATTGGGGATTGGCACATCCACTTCTCATGCTCCTTCTACTGACTCAATTCCAATAATTTCTTCTATGGGCGCTCCAACCTGGATTCACCCAATCCATGTTTCATTTGAAGAGCCACCTTCTCGATGCTCATGCCTCTAA

Protein sequence

MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEMTPWKSMRQRMIVELGIGTSTSHAPSTDSIPIISSMGAPTWIHPIHVSFEEPPSRCSCL

Homology

[Close]

BLAST of HG10019169 vs. NCBI nr
Match: XP_004137154.1 (DNA replication complex GINS protein PSF2 [Cucumis sativus] >KAE8649312.1 hypothetical protein Csa_014994 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 3.5e-38
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPH+NLFSAEEVEFVAEDEMVEI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIRTPEWMSVE
Sbjct: 61 IALKKRGKCAIRTPEWMSVE 80

[Close]

BLAST of HG10019169 vs. NCBI nr
Match: XP_038905117.1 (DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida] >XP_038905118.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida] >XP_038905119.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPH+NLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIR PEWMSVE
Sbjct: 61 IALKKRGKCAIRPPEWMSVE 80

[Close]

BLAST of HG10019169 vs. NCBI nr
Match: XP_008462891.1 (PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo] >XP_016902941.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-37
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIRTPEWMSVE
Sbjct: 61 IALKKRGKCAIRTPEWMSVE 80

[Close]

BLAST of HG10019169 vs. NCBI nr
Match: TYK07564.1 (DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-37
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIRTPEWMSVE
Sbjct: 61 IALKKRGKCAIRTPEWMSVE 80

[Close]

BLAST of HG10019169 vs. NCBI nr
Match: XP_022925113.1 (DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 5.7e-36
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIR PEWMSVE
Sbjct: 61 IALKKRGKCAIRPPEWMSVE 80

[Close]

BLAST of HG10019169 vs. ExPASy Swiss-Prot
Match: Q9C7A8 (DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana OX=3702 GN=GINS2 PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-28
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQ+DPH++LFS +EVEF+AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA
Sbjct: 1  MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          +ALK+RGKC  R P WMSV+
Sbjct: 61 VALKRRGKCTFRPPGWMSVD 80

[Close]

BLAST of HG10019169 vs. ExPASy Swiss-Prot
Match: Q9Y248 (DNA replication complex GINS protein PSF2 OS=Homo sapiens OX=9606 GN=GINS2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-17
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 14  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRT 73
           A EVEF+AE E+V I+PN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC +  
Sbjct: 3   AAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLP 62

Query: 74  PEWMSVE--------------MTPWKSMRQRMIVELGIGTSTSHAPSTDSI 111
           PEWM VE               TP  S     + +L +  ++ + P  D I
Sbjct: 63  PEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEI 113

[Close]

BLAST of HG10019169 vs. ExPASy Swiss-Prot
Match: Q9D600 (DNA replication complex GINS protein PSF2 OS=Mus musculus OX=10090 GN=Gins2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-17
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 14  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRT 73
           A EVEF+AE E+V I+PN  +D ++LI GD GPF P +  +VPLWLAI LK+R KC +  
Sbjct: 3   AAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLP 62

Query: 74  PEWMSVE--------------MTPWKSMRQRMIVELGIGTSTSHAPSTDSI 111
           PEWM VE               TP  S     I +L +  ++ + P  D+I
Sbjct: 63  PEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTI 113

[Close]

BLAST of HG10019169 vs. ExPASy Swiss-Prot
Match: Q7ZT46 (DNA replication complex GINS protein PSF2 OS=Xenopus laevis OX=8355 GN=gins2 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-17
Identity = 47/111 (42.34%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 14  AEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRT 73
           A EVEF+AE E V ++PN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC I  
Sbjct: 3   ASEVEFLAEKEQVTVIPNFSLDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCRIVP 62

Query: 74  PEWMSVE--------------MTPWKSMRQRMIVELGIGTSTSHAPSTDSI 111
           PEWM VE               TP  S     + +L +  +  + P  D I
Sbjct: 63  PEWMDVEKLEAIRDQERREETFTPMPSPYYMELTKLLLNHAADNIPKADEI 113

[Close]

BLAST of HG10019169 vs. ExPASy Swiss-Prot
Match: Q54BL9 (Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum OX=44689 GN=gins2 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 16 EVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPE 75
          ++EF+AED  + +VPN +M+SL  + G+YGPF P    E+PLWLAI+LKK+ KC I  P+
Sbjct: 10 QIEFLAEDTTITVVPNFKMESLIFLSGEYGPFVPSFPIEIPLWLAISLKKKKKCTITPPD 69

Query: 76 WMSVEMTPWKSMRQRMI 93
          WM+      K   +  I
Sbjct: 70 WMTYNKLKAKFQEENKI 86

[Close]

BLAST of HG10019169 vs. ExPASy TrEMBL
Match: A0A0A0KVY8 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G114190 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.5e-38
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
           MAGQSDPH+NLFSAEEVEFVAEDEMVEI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 71  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 130

Query: 61  IALKKRGKCAIRTPEWMSV 80
           IALKKRGKCAIRTPEWMSV
Sbjct: 131 IALKKRGKCAIRTPEWMSV 149

[Close]

BLAST of HG10019169 vs. ExPASy TrEMBL
Match: A0A1S4E3Y0 (DNA replication complex GINS protein PSF2 OS=Cucumis melo OX=3656 GN=LOC103501165 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIRTPEWMSVE
Sbjct: 61 IALKKRGKCAIRTPEWMSVE 80

[Close]

BLAST of HG10019169 vs. ExPASy TrEMBL
Match: A0A5D3C8I7 (DNA replication complex GINS protein PSF2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00350 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-37
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP +NLFSAEEVEFVAEDEM+EIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIRTPEWMSVE
Sbjct: 61 IALKKRGKCAIRTPEWMSVE 80

[Close]

BLAST of HG10019169 vs. ExPASy TrEMBL
Match: A0A6J1HN13 (DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC111466105 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.7e-36
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIR PEWMSVE
Sbjct: 61 IALKKRGKCAIRPPEWMSVE 80

[Close]

BLAST of HG10019169 vs. ExPASy TrEMBL
Match: A0A6J1HPD8 (DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC111466105 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.7e-36
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPH+ LFSAEE+EFVAEDEMVEIVPNMRMDSL+LICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          IALKKRGKCAIR PEWMSVE
Sbjct: 61 IALKKRGKCAIRPPEWMSVE 80

[Close]

BLAST of HG10019169 vs. TAIR 10
Match: AT3G12530.1 (PSF2 )

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-29
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MAGQSDPHVNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQ+DPH++LFS +EVEF+AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA
Sbjct: 1  MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVE 81
          +ALK+RGKC  R P WMSV+
Sbjct: 61 VALKRRGKCTFRPPGWMSVD 80

[Close]

BLAST of HG10019169 vs. TAIR 10
Match: AT3G12530.2 (PSF2 )

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-20
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 20 VAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSV 79
          +AEDE+VEIVPNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV
Sbjct: 1  MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

Query: 80 E 81
          +
Sbjct: 61 D 61

The following BLAST results are available for this feature:

BLAST of HG10019169 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137154.1	3.5e-38	97.50	DNA replication complex GINS protein PSF2 [Cucumis sativus] >KAE8649312.1 hypoth...	[more]
XP_038905117.1	1.3e-37	97.50	DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida] >XP_038...	[more]
XP_008462891.1	5.1e-37	96.25	PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo] >...	[more]
TYK07564.1	5.1e-37	96.25	DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022925113.1	5.7e-36	93.75	DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10019169 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7A8	3.5e-28	68.75	DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana OX=3702 GN=GIN...	[more]
Q9Y248	4.7e-17	42.34	DNA replication complex GINS protein PSF2 OS=Homo sapiens OX=9606 GN=GINS2 PE=1 ...	[more]
Q9D600	4.7e-17	42.34	DNA replication complex GINS protein PSF2 OS=Mus musculus OX=10090 GN=Gins2 PE=1...	[more]
Q7ZT46	6.1e-17	42.34	DNA replication complex GINS protein PSF2 OS=Xenopus laevis OX=8355 GN=gins2 PE=...	[more]
Q54BL9	1.2e-15	45.45	Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum O...	[more]

BLAST of HG10019169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVY8	8.5e-38	97.47	Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G114190 PE=4 S...	[more]
A0A1S4E3Y0	2.5e-37	96.25	DNA replication complex GINS protein PSF2 OS=Cucumis melo OX=3656 GN=LOC10350116...	[more]
A0A5D3C8I7	2.5e-37	96.25	DNA replication complex GINS protein PSF2 isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A6J1HN13	2.7e-36	93.75	DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HPD8	2.7e-36	93.75	DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of HG10019169 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12530.1	2.5e-29	68.75	PSF2	[more]
AT3G12530.2	6.1e-20	67.21	PSF2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 53..80 e-value: 1.7E-5 score: 25.2
None	No IPR available	GENE3D	3.40.5.50		coord: 12..77 e-value: 2.9E-31 score: 109.3
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 12..71
IPR007257	DNA replication complex GINS protein Psf2	PANTHER	PTHR12772	DNA REPLICATION COMPLEX GINS PROTEIN PSF2	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019169.1	HG10019169.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0031981	nuclear lumen
cellular_component	GO:0005634	nucleus