HG10019154 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019154
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 17811360 .. 17811872 (+)
RNA-Seq ExpressionHG10019154
SyntenyHG10019154
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTATTTGGAGAGATTGGAATTCAACAATAAAGAGTCTATTCAGTCTGTGGAGAACCGATGCGAATGGATTTTGGATTATGTAAACGAGTTTGGTTTGGTTCTGAAAGAGACAAACATATTTGTTCCCTCGAAGCCGATGACTTTTGACCTTTCTATGAGTGATCGGGTTCTTATTCATGTTGACGCAGCTTGTAAGATTAATCATCCTGTAGTTGGCTTTGGTGCAATTATTGGTACCCTCTCGGGGTCCATTGTGGCTTCTATTCACGGGTTCAGAGTCTCCTCTTTAAGCCCTTTGTGCGCTGAGGCTTATGCCATTTATGAGAGCCTTCATTTAGCTGAAAGACTGGGGCTTTCTCGTCTGTTAGTGTTATCTGATTCATTATCTACGGTTCAAATAATCAATGATCTTAAGGAAGTTGAGGTGGATGTTGCAAACACTGTGATGGATATCCGGAAGATCTATGGGGGCTTCAATTACCTTTCAGCATGTGTCCCAGACTCATAA

mRNA sequence

ATGGGCTATTTGGAGAGATTGGAATTCAACAATAAAGAGTCTATTCAGTCTGTGGAGAACCGATGCGAATGGATTTTGGATTATGTAAACGAGTTTGGTTTGGTTCTGAAAGAGACAAACATATTTGTTCCCTCGAAGCCGATGACTTTTGACCTTTCTATGAGTGATCGGGTTCTTATTCATGTTGACGCAGCTTGTAAGATTAATCATCCTGTAGTTGGCTTTGGTGCAATTATTGGTACCCTCTCGGGGTCCATTGTGGCTTCTATTCACGGGTTCAGAGTCTCCTCTTTAAGCCCTTTGTGCGCTGAGGCTTATGCCATTTATGAGAGCCTTCATTTAGCTGAAAGACTGGGGCTTTCTCGTCTGTTAGTGTTATCTGATTCATTATCTACGGTTCAAATAATCAATGATCTTAAGGAAGTTGAGGTGGATGTTGCAAACACTGTGATGGATATCCGGAAGATCTATGGGGGCTTCAATTACCTTTCAGCATGTGTCCCAGACTCATAA

Coding sequence (CDS)

ATGGGCTATTTGGAGAGATTGGAATTCAACAATAAAGAGTCTATTCAGTCTGTGGAGAACCGATGCGAATGGATTTTGGATTATGTAAACGAGTTTGGTTTGGTTCTGAAAGAGACAAACATATTTGTTCCCTCGAAGCCGATGACTTTTGACCTTTCTATGAGTGATCGGGTTCTTATTCATGTTGACGCAGCTTGTAAGATTAATCATCCTGTAGTTGGCTTTGGTGCAATTATTGGTACCCTCTCGGGGTCCATTGTGGCTTCTATTCACGGGTTCAGAGTCTCCTCTTTAAGCCCTTTGTGCGCTGAGGCTTATGCCATTTATGAGAGCCTTCATTTAGCTGAAAGACTGGGGCTTTCTCGTCTGTTAGTGTTATCTGATTCATTATCTACGGTTCAAATAATCAATGATCTTAAGGAAGTTGAGGTGGATGTTGCAAACACTGTGATGGATATCCGGAAGATCTATGGGGGCTTCAATTACCTTTCAGCATGTGTCCCAGACTCATAA

Protein sequence

MGYLERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSACVPDS
Homology
BLAST of HG10019154 vs. NCBI nr
Match: GAU49954.1 (hypothetical protein TSUD_180180 [Trifolium subterraneum])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 4   LERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVD 63
           L RL FN +  +++ +N C      V+  G V    + F+  K   F  +     +++VD
Sbjct: 770 LSRLSFNIRSMVETFKNCC----TPVSNVGSV----DRFIKWKNNNFSCT-----ILNVD 829

Query: 64  AACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRL 123
            +C  +    GFG II    G  +A   G+   S   L AE YAIY+ L LA+ +G+  L
Sbjct: 830 GSCLGSPARAGFGGIIRNTFGYYLAGFSGYIQGSSDILYAELYAIYKGLLLAKNMGIDEL 889

Query: 124 LVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC 167
           +  SDSL  + +I   +      A  + DI+++    N +S C
Sbjct: 890 VCYSDSLHCINLIKGPQVKYHIHAVLIQDIKELI-SLNNVSLC 918

BLAST of HG10019154 vs. NCBI nr
Match: XP_042974783.1 (uncharacterized protein LOC122306422 [Carya illinoinensis])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 35/104 (33.65%), Postives = 53/104 (50.96%), Query Frame = 0

Query: 63  DAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSR 122
           DAA  ++  +VG G II   +G ++A++   R   LSP  AEAYA+  ++  +   G+ +
Sbjct: 167 DAAIDVSRDLVGIGGIIRDCNGEVLATLRAKRKMILSPFAAEAYALMVAMLFSNEAGILK 226

Query: 123 LLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC 167
           L++  DSL  VQ +  L E        V D RK+   F   S C
Sbjct: 227 LMLKGDSLQVVQKLQKLVEDWSIGGLIVEDTRKVLKSFISWSVC 270

BLAST of HG10019154 vs. NCBI nr
Match: XP_037439691.1 (uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides])

HSP 1 Score: 54.7 bits (130), Expect = 9.1e-04
Identity = 35/118 (29.66%), Postives = 58/118 (49.15%), Query Frame = 0

Query: 44  PSKPMTFDLSMSDRVLIHVDAACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCA 103
           P+K + +       + ++VDA+  ++      GA++   SG+ +A+   FR  ++     
Sbjct: 294 PTKQIRWVRPAKGVIKLNVDASYHVDEGAGATGAVLRDSSGAFIAASCSFRQYAMDVPSM 353

Query: 104 EAYAIYESLHLAERLGLSRLLVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFN 162
           EA A+ E L LAE LG+  L+V SDS   VQ + D  E     A    D R++   F+
Sbjct: 354 EALALLEGLRLAEHLGIYALVVESDSQEIVQAMTDPSEYRASAAVVTDDCRQVLSSFS 411

BLAST of HG10019154 vs. ExPASy TrEMBL
Match: A0A2Z6P0N0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_180180 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-05
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 4   LERLEFNNKESIQSVENRCEWILDYVNEFGLVLKETNIFVPSKPMTFDLSMSDRVLIHVD 63
           L RL FN +  +++ +N C      V+  G V    + F+  K   F  +     +++VD
Sbjct: 770 LSRLSFNIRSMVETFKNCC----TPVSNVGSV----DRFIKWKNNNFSCT-----ILNVD 829

Query: 64  AACKINHPVVGFGAIIGTLSGSIVASIHGFRVSSLSPLCAEAYAIYESLHLAERLGLSRL 123
            +C  +    GFG II    G  +A   G+   S   L AE YAIY+ L LA+ +G+  L
Sbjct: 830 GSCLGSPARAGFGGIIRNTFGYYLAGFSGYIQGSSDILYAELYAIYKGLLLAKNMGIDEL 889

Query: 124 LVLSDSLSTVQIINDLKEVEVDVANTVMDIRKIYGGFNYLSAC 167
           +  SDSL  + +I   +      A  + DI+++    N +S C
Sbjct: 890 VCYSDSLHCINLIKGPQVKYHIHAVLIQDIKELI-SLNNVSLC 918

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GAU49954.11.8e-0429.45hypothetical protein TSUD_180180 [Trifolium subterraneum][more]
XP_042974783.13.1e-0433.65uncharacterized protein LOC122306422 [Carya illinoinensis][more]
XP_037439691.19.1e-0429.66uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2Z6P0N08.9e-0529.45Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_180180 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 62..162
e-value: 5.1E-10
score: 39.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 56..167
e-value: 1.6E-8
score: 36.7
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 60..155
e-value: 6.07476E-11
score: 55.0128
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 57..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019154.1HG10019154.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity