HG10019153 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019153
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 17765981 .. 17766148 (+)
RNA-Seq ExpressionHG10019153
SyntenyHG10019153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAAAAGGAGATTTGCTCATGAATTGTATAGAGCCATGTCCAGACCTACACGATGATGTTCCATGTAATAACGAATGTCTCAAACAAACAAAAAGCGGTGGGCTTTGCTATCCCAAGTTTGTTGGGCTTTCAGACGAAAAAGATTGTTGTTGTTATATATGA

mRNA sequence

ATGGCAGCAAAAGGAGATTTGCTCATGAATTGTATAGAGCCATGTCCAGACCTACACGATGATGTTCCATGTAATAACGAATGTCTCAAACAAACAAAAAGCGGTGGGCTTTGCTATCCCAAGTTTGTTGGGCTTTCAGACGAAAAAGATTGTTGTTGTTATATATGA

Coding sequence (CDS)

ATGGCAGCAAAAGGAGATTTGCTCATGAATTGTATAGAGCCATGTCCAGACCTACACGATGATGTTCCATGTAATAACGAATGTCTCAAACAAACAAAAAGCGGTGGGCTTTGCTATCCCAAGTTTGTTGGGCTTTCAGACGAAAAAGATTGTTGTTGTTATATATGA

Protein sequence

MAAKGDLLMNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCCYI
Homology
BLAST of HG10019153 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 2  AAKGDLLMNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCC 54
          +AKGD+ M CI PC D  DD  C ++C++  K  G CYPK   +++EKDCCC
Sbjct: 22 SAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCC 73

BLAST of HG10019153 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 1  MAAKGDLL-MNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCC 54
          M AKGD+L M+C++PC D +DD  C N+C+K+    G CYPK    S +KDCCC
Sbjct: 12 MIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCCC 63

BLAST of HG10019153 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.7e-07
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 4  KGDLL-MNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCCYI 56
          KGD+L +NC+ PC D +DD  C N+C+++    G CYPK    S +KDCCC +
Sbjct: 25 KGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCNV 75

BLAST of HG10019153 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 4  KGDLLMNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCC 54
          +GD L NC+ PC + + D+ CN  C++Q +  G C PK  G+SD K CCC
Sbjct: 25 EGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCC 74

BLAST of HG10019153 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 4  KGDLL-MNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCCYI 56
          KGD+L ++C+ PC D +DD  C N+C+++    G CYPK    S +KDCCC +
Sbjct: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLP--STDKDCCCNV 75

BLAST of HG10019153 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 1  MAAKGDLL-MNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCCYI 56
          M AKGD+L ++C+ PC D +DD  C N+C+++    G CYPK    S +KDCCC +
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCNV 54

BLAST of HG10019153 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 4  KGDLLMNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCC 54
          +GD L NC+ PC + + D+ CN  C++Q +  G C PK  G+SD K CCC
Sbjct: 25 EGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCC 74

BLAST of HG10019153 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.0e-07
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 4  KGDLL-MNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCCYI 56
          KGD+L ++C+ PC D +DD  C N+C+++    G CYPK    S +KDCCC +
Sbjct: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLP--STDKDCCCNV 75

BLAST of HG10019153 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0

Query: 4  KGDLL-MNCIEPCPDLHDDVPCNNECLKQTKSGGLCYPKFVGLSDEKDCCC 54
          KGD+L ++C+ PC D +DD  C N+C+++    G CYPK    S +KDCCC
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCC 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586428.11.0e-0950.00hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651701.11.5e-0851.85hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KAE8651697.13.7e-0747.17hypothetical protein Csa_006343 [Cucumis sativus][more]
KGN54497.11.4e-0646.00hypothetical protein Csa_012842 [Cucumis sativus][more]
KGN61228.11.9e-0645.28hypothetical protein Csa_006463 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LKF53.6e-0846.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R86.9e-0746.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A0A0LHG99.0e-0745.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG51.5e-0647.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019153.1HG10019153.1mRNA