HG10019149 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019149
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	polyadenylate-binding protein 2-like
Location	Chr04: 17652730 .. 17657304 (-)
RNA-Seq Expression	HG10019149
Synteny	HG10019149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACGATGACATCGACATGATTGGCTCCGACACCAACGACGCTGTGGTTCGTTTCCTTTTTCAATCTTTCAATTCCATTCCCTATTCATCATCCTCTTGTTTTTCGTCGTCTAAAAACCCTAATTCCCTCTCTTTCCTCCTCCTTTCTTCACCGTTCTAATCGTCTTTCAGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCACTACGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGGTTCTTTTATTATGCTCTTCTTCGCTTTTCCGAATTAGTTCTCTCTTTTTCTACAATGTCCTTCAGATATGGAGACACTCTAGCGAATCTCTTCGTTTTGTTACTATTTACGATTGTCTTTTTTCGATCTTAATTGGTGAAATACTGAATTTCTAAGTCGAGGTTTGGGTTGGAGTTGCTATTTGTTTGATTCTGTAGGTCGTCTTTTGATCCGATGCAAGTTGAAAATGTTTAAGGAAATGTTCACATTTTGGAAGAAGGTTCATTTGGATCTCATGCAGAAAACTGGAGCTTGTATTTTAATCTCTTCTTGTTGTAATTTATTAACTCTGAGTGACTGAATCTTGAACTATCCCCTACTTCGAGACGATTCATTCTCATCTTGATCAAGAAGTGGTAGTTTCTAATTAGGAGAAGCTTGCTAGTTGCTACTGTACTGCCTTTTCTTGTTTTATGAAAGAATTCCGATTTTGAAATTGAGATGAGAACCTTAGTTGTGTGTCAGTTATGGAGACTTCATTCTTTCTTGATCATCCAGTACACTTTTTTATTCTAAATACATCTCTCGTACAAAATAAGTTCTATCGGTCTGTTATCCTTAAACATTTAACCACTTTTTGTACTACCAGATCCGGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCACGGTCAGTGTTTGTTGGCAATGTACGATCTCTTTATCCTTGACCAATATTATTATTGTTATTATTTTTTTTCATATTTATCCAGTTGCTTGGTTTGGTCACACAATTAGCTGAACTTTGATTTATTGGGTGAAAGGATTCTCTCTGTTCATGTTAAATTCTTGAACAATATCAGCTTTGTTGTTGTCAGAGACTTAGCTTACCTGAAGAAGGCATGTTTCCATTTAATGAAAAACTAACTGATTCCTTTTTCTGTACAACATATGACAATGGAATCTTTTGTTTTTGATTTTTTTTTTTTTTTTTTGCACTTTGTTGGTATAGATGGCTGAATTCCAGTTACTTTCTTTTGTAAAATAAATTCTTGTGCGGTTAATTTTCAATTTGTGATTAGAGTGCAGCCATCAATATATCGATCTCTAATAGCTTGTGGAGGGAAACACATGGAATGACATTAATTTAAACCTTTTCCTATTTTCATTGTTTGAAATAACTTTAGCATTATGTCCTAATTGTTTGCACCACCTCCTAATTTTACTAGATTTGTTATTTCCATTTAAGTCATTCATCATGAAGGGAACTATGACTGGCTCTTCTTTAGCTTTTTCTTTTATTAATCTTCAGGCTTTTCTTTTGCTCCATGAATTTGGTATGAAGAATGGGGCAATCTTATTGATGTATTTAACAATCTTTCTATATTTTAAATGGATTGGAGTTGTTAGTAATTGGAGGTAAATGGGCACCACTTATGAAGAGCTGTATTCTTCGTTAAACTATAGAAAGAGCTTTTTGATTATGATTTTCTTTAAGGGTTCACTTATTAATTCTTGTCATGGATTAAGATTGCAGTGACTAACTTTCATTGCTTATGTGGTCCTAAAGGTTTATTAAATTTCAGTTAGCTATGATTTGTTCCTTTTGGTACATATCATTCATGTTTTGGGAAGAGATTGGATCACGCTTTCCATTTTGAGGATGTTGAAGTGGTTGGTTGCTAGGAGATGTTAGGAGGGATCATTTTATTATTATGTATCATTCTGCCTTTTAAGAACTTTGAAATCTATAAATAACTATTAGGAATATTTTCTCAATAGATTATTCTATACAATGCAGATGGTACTTTGTAAACTTTATATGACCCATTTCTGCATTGTGCTTGAAATTTTAGTATATGTTGGTGTTTCTAGCCTGATTTGACTCCCATGTTTGACTGCAATTACAGGTTAGGCTTACTTCATCACGTTTTCTGATTACCTATTGCTGAAGTTGGATATTCTCTGATATGTTATAAAGCTAGCTATCTAGTATATTAAAAAAAAATGTCTTGTCCCAAAAGAAAGAACAGATAAAAAAAATGTGATAAAATAAAGAAGGATAAGGTGTATAATTTTCAAGAGGGTAATAGTTTTGGTTGAATCTTTTGAAAAGCGTGATGGAAGAAAATTGTTGAGATGAGTTAACAAGAAGAGAAAATATACCTAAATGTCTTGTAGTCCATGCCTTGGGTGGGCTCAGAGTTGGTCAAAATCTAACATGTCTCAAGGTTGAGGCCATGTGGGAAATGTGGAAAAGGAGTTATTAAAAAAAAAAGAGAGGGAAAAAGAGGAAAAGACTCACCAGCATAGAAAAGGGTATGTGTGACTATGGATAAGGTCAGCAGAAGTTTTACTGGCTTGCTTGAATGAACTGGAATGATGGAGAGGGCTTGACAAGTTTTGAAGGGAAGTAATGTGCATTCGCAACTAAGGAGGACTAGCTGTGGCGCTGAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATCTGTGACCACTGTTCGAGGATTGTTTAAGTGATTTACAATCTATGGTGAGAGACCTCCAAATATCTCTGATTTTCCTGTCTCCTCCTCCCTTAATCCATCGAGGAAAGGAAAAAACATAATTAGCGAAGCTTTTATGTTTCTATTTCAATTGTGGGAAACATTCATTTTTTACCTTCGTAAATAGCCCACTCAGTCAATTTTAACATTAAAGTTTTAGATTCATCAAATTAAACGCCAGGCGTATAGATTATAAAATTAATACCTTCCTTGATATAAGTTAGAAAAATATTAAATAACTAACTAGTAGATTATTCAAAATCTAACCAACCAACCCAAAGTACTGCTAAGAACAAATCCTGAACATCACCCAATGAAAAGACATCCCTGCTCAACAATTAGCTAAGTAGAAATTGTCTTTTTCTCCAATCACAAGCCCCCACACTTGACTTTAAATCTCATAAAAAAAATGAAAAACAAAATCAAAACAAATAATGACCGACAGGGTTCTAATTTGAACTTCTATTCAGGTTTGGTTGGATGAAATTAAAATTTAAAAATTAAATTGGACTCATTCAGCAAAGTACCCGGGTATGGTTGTTTTTCTGTTGTTTAGTAGGAGCAATCAAATGTCCCTCCTTTCCATGGCCATGGGTAACAAAAACTATTAGTCGTCTAGGTTGTTACAAGAGATCAAATTGGGAGAAATTAGAGTTGCATGGTGGTTTCTTGTCTTCTCATGAATGGGTGTCCGCATTTGGAATTAGAATGGCACCTATAAAATTGTGAACAATTGGGACATGACCTTTTCCTTAAAAAAAATTTCCAGTTTGTTACAGGGTGATGTACTATGACTATCACACTGATTATGAAAAACCATCATGAATTGGCTTAGTGGTAAATAAGGGGGCATGACGATAAAGGGTTAAAAGGTCATGGATTCAATCCATGGTGGCCACCTACTTAGAATTTAATATCCTATAGGTTTTCTTGACACCCAAATGTTGTAGGGTTAGGCAAGTCGTCTTGTGAGATTAGTCGAGGTGCTGCATAAGCTGGCTGGACACTCATAGATATTAAAAAAATAAAAAACTGATTATGAAAATGCATGGCTCATTTTATTGATTAAAAATATTTGTGAGATTTACATTCTACTGATATTGATAAAATATAAGTTGACTGATAGAAATGGACTATGAAGCCCTATTTTATTGGTTTTTTGTGGTAAGACAAATGTTTTAAGCTACATTTGGAACAGGTTGACTATTCATGTACTCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGGACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTAGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAACTGCATGGTCGACAGCTTAAGGTTAACATAATCTTTATACATTACTTGATTAGTGTGTGTTTAAGATTCTTCTACTGAATTTTGCACCTTTTTTTGGAAAAATTGAATTTTTAAGTATGTTGCAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATTCATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGTATGATTGGTGAATAAAAATTTTCAATGCAAACCGCTTGAATCTCTTGCTCTCTTCCTAGTTATTTAGCATAGTTCTATCTGTTGCAGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

mRNA sequence

ATGGAGCACGATGACATCGACATGATTGGCTCCGACACCAACGACGCTGTGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCACTACGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGATCCGGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCACGGTCAGTGTTTGTTGGCAATGTTGACTATTCATGTACTCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGGACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTAGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAACTGCATGGTCGACAGCTTAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATTCATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

Coding sequence (CDS)

ATGGAGCACGATGACATCGACATGATTGGCTCCGACACCAACGACGCTGTGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCACTACGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGATCCGGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCACGGTCAGTGTTTGTTGGCAATGTTGACTATTCATGTACTCCAGAAGAAGTACAGCAACATTTCCAGTCATGTGGGACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTAGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAACTGCATGGTCGACAGCTTAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATTCATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

Protein sequence

MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY

Homology

[Close]

BLAST of HG10019149 vs. NCBI nr
Match: XP_008462875.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA0061167.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa] >TYK29930.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 6.9e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDIDMIGSDTNDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. NCBI nr
Match: XP_038877304.1 (polyadenylate-binding protein 2-like [Benincasa hispida])

HSP 1 Score: 387.1 bits (993), Expect = 9.0e-104
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSDTNDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. NCBI nr
Match: XP_011653388.1 (polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothetical protein Csa_015373 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. NCBI nr
Match: XP_022140995.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 192/197 (97.46%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+DIDMIGS++NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. NCBI nr
Match: XP_008462873.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 4.9e-102
Identity = 196/202 (97.03%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDIDMIGSDTNDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YG-----KVPRFRMPTRYGPYY 198
           YG     KVPRFRMPTRYGPYY
Sbjct: 181 YGSICCRKVPRFRMPTRYGPYY 202

[Close]

BLAST of HG10019149 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-77
Identity = 146/192 (76.04%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 5   DIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           D+DM  +D +   ELD+MKKRLKEMEDEAAALREMQAKVEKEM + QDPAS AA+QA +E
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 88

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQE 124
           EVD+RSVFVGNVDY+CTPEEVQQHFQ+CGTV+R+TI TDKFGQPKG+AYVEFVE EAVQE
Sbjct: 89  EVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQE 148

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKV 184
           AL LNESELHGRQLKV  KRTN+PG+KQ+R RR NP+MG R R P+++PY +SPYGYGK 
Sbjct: 149 ALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKA 208

Query: 185 PRFRMPTRYGPY 197
           PRFR P RY PY
Sbjct: 209 PRFRRPMRYMPY 219

[Close]

BLAST of HG10019149 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.2e-76
Identity = 144/192 (75.00%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 5   DIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           DIDM  +D +   EL +MK+RLKEME+EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQE 124
           EVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFVE EAVQE
Sbjct: 85  EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKV 184
           AL LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V PYF+SPYGYGK 
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKA 204

Query: 185 PRFRMPTRYGPY 197
           PRFR P RY PY
Sbjct: 205 PRFRRPMRYMPY 216

[Close]

BLAST of HG10019149 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 128/187 (68.45%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 10  GSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSR 69
           GS + D   L+DMKKR+KE+E+EA ALREMQAK EK+M + QDP S   S A +EEVDSR
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-SGGVSAAEKEEVDSR 107

Query: 70  SVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLN 129
           S++VGNVDY+CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVEFVE EAVQ +L+LN
Sbjct: 108 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 167

Query: 130 ESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRM 189
           ESELHGRQ+KV+AKRTN+PGM+Q+R  R  PF   R   P V   F+ PY YG+VPRFR 
Sbjct: 168 ESELHGRQIKVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP--FYPPYAYGRVPRFRR 227

Query: 190 PTRYGPY 197
           P RY PY
Sbjct: 228 PMRYRPY 227

[Close]

BLAST of HG10019149 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-34
Identity = 88/174 (50.57%), Postives = 113/174 (64.94%), Query Frame = 0


Query: 7   DMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEV 66
           D    DT +  EL +MK+R+ EME EAA LR MQ +++ E  ++++         ++E +
Sbjct: 3   DQDALDTQEK-ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESI 62

Query: 67  DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFVEPEAVQEA 126
           D++SV+VGNVDYS TPEE+Q HF SCG+VNR+TI  DKF G PKG+AY+EF EP  V  A
Sbjct: 63  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 122

Query: 127 LLLNESELHGRQLKVTAKRTNIPGMKQYRPR-----RSNPFMGARSRSPYVAPY 175
           LLLN S LH R LKVT KRTN+PGM + R R     R     G R R+   APY
Sbjct: 123 LLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

[Close]

BLAST of HG10019149 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-31
Identity = 87/208 (41.83%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 2   EHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAA---A 61
           E +  ++ G  T +  EL+ +K R++EME+EA  L+E+Q +VEK+M+    P +A     
Sbjct: 93  EEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIM 152

Query: 62  SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFV 121
           S   + E D+RS++VGNVDY  T EE++ HF  CG+VNR+TI  DKF G PKG+AY+EF 
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFC 212

Query: 122 EPEAVQEALLLNESELHGRQLKVTAKRTNIPGMK---------QYRPRRSNPFMGARSRS 181
           + E+V+ +L L+ES   GRQ+KV  KRTN PG+          +YR R S+      SRS
Sbjct: 213 DKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASS----YSSRS 272

Query: 182 PYVAPYFFSPYGYGKVPRFRMPTRYGPY 197
            + + Y   P G     R R  + Y PY
Sbjct: 273 RFYSGYTPRPRGRVYRGRARATSWYTPY 296

[Close]

BLAST of HG10019149 vs. ExPASy TrEMBL
Match: A0A5A7V2R3 (Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00160 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.3e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDIDMIGSDTNDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. ExPASy TrEMBL
Match: A0A1S3CHX7 (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.3e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDIDMIGSDTNDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. ExPASy TrEMBL
Match: A0A0A0KXZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDD+DMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. ExPASy TrEMBL
Match: A0A6J1CGQ3 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011513 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.8e-102
Identity = 192/197 (97.46%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEH+DIDMIGS++NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVD+RSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEF+EPE
Sbjct: 61  ANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YGKVPRFRMPTRYGPYY 198
           YGKVPRFRMPTRYGPYY
Sbjct: 181 YGKVPRFRMPTRYGPYY 197

[Close]

BLAST of HG10019149 vs. ExPASy TrEMBL
Match: A0A1S3CIE7 (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.4e-102
Identity = 196/202 (97.03%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60
           MEHDDIDMIGSDTNDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQDPASAAASQ
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQDPASAAASQ 60

Query: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120
           ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE
Sbjct: 61  ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPE 120

Query: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180
           AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG
Sbjct: 121 AVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYG 180

Query: 181 YG-----KVPRFRMPTRYGPYY 198
           YG     KVPRFRMPTRYGPYY
Sbjct: 181 YGSICCRKVPRFRMPTRYGPYY 202

[Close]

BLAST of HG10019149 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 289.7 bits (740), Expect = 1.8e-78
Identity = 146/192 (76.04%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 5   DIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           D+DM  +D +   ELD+MKKRLKEMEDEAAALREMQAKVEKEM + QDPAS AA+QA +E
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 88

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQE 124
           EVD+RSVFVGNVDY+CTPEEVQQHFQ+CGTV+R+TI TDKFGQPKG+AYVEFVE EAVQE
Sbjct: 89  EVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQE 148

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKV 184
           AL LNESELHGRQLKV  KRTN+PG+KQ+R RR NP+MG R R P+++PY +SPYGYGK 
Sbjct: 149 ALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKA 208

Query: 185 PRFRMPTRYGPY 197
           PRFR P RY PY
Sbjct: 209 PRFRRPMRYMPY 219

[Close]

BLAST of HG10019149 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.6 bits (732), Expect = 1.5e-77
Identity = 144/192 (75.00%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 5   DIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           DIDM  +D +   EL +MK+RLKEME+EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQE 124
           EVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFVE EAVQE
Sbjct: 85  EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKV 184
           AL LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V PYF+SPYGYGK 
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKA 204

Query: 185 PRFRMPTRYGPY 197
           PRFR P RY PY
Sbjct: 205 PRFRRPMRYMPY 216

[Close]

BLAST of HG10019149 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.7e-71
Identity = 134/178 (75.28%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 5   DIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANRE 64
           DIDM  +D +   EL +MK+RLKEME+EAAALREMQAKVEKEM + QDPAS AA+Q  +E
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84

Query: 65  EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQE 124
           EVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNR+TI  DKFGQPKG+AYVEFVE EAVQE
Sbjct: 85  EVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQE 144

Query: 125 ALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG 183
           AL LNESELHGRQLKV+ KRTN+PGMKQY P R NP MG R R P+V PYF+SPYGYG
Sbjct: 145 ALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of HG10019149 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-64
Identity = 128/187 (68.45%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 10  GSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSR 69
           GS + D   L+DMKKR+KE+E+EA ALREMQAK EK+M + QDP S   S A +EEVDSR
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP-SGGVSAAEKEEVDSR 107

Query: 70  SVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLN 129
           S++VGNVDY+CTPEEVQQHFQSCGTVNR+TI TDKFGQPKG+AYVEFVE EAVQ +L+LN
Sbjct: 108 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 167

Query: 130 ESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRM 189
           ESELHGRQ+KV+AKRTN+PGM+Q+R  R  PF   R   P V   F+ PY YG+VPRFR 
Sbjct: 168 ESELHGRQIKVSAKRTNVPGMRQFR-GRGRPFRPMRGFMPGVP--FYPPYAYGRVPRFRR 227

Query: 190 PTRYGPY 197
           P RY PY
Sbjct: 228 PMRYRPY 227

[Close]

BLAST of HG10019149 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-58
Identity = 125/224 (55.80%), Postives = 150/224 (66.96%), Query Frame = 0


Query: 10  GSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQ------------------ 69
           GS + D   L+DMKKR+KE+E+EA ALREMQAK EK+M + Q                  
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILE 107

Query: 70  -------------------DPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 129
                              +  ++  S A +EEVDSRS++VGNVDY+CTPEEVQQHFQSC
Sbjct: 108 SFSESMNLSRNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSC 167

Query: 130 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 189
           GTVNR+TI TDKFGQPKG+AYVEFVE EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q
Sbjct: 168 GTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQ 227

Query: 190 YRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 197
           +R  R  PF   R   P V   F+ PY YG+VPRFR P RY PY
Sbjct: 228 FR-GRGRPFRPMRGFMPGVP--FYPPYAYGRVPRFRRPMRYRPY 265

The following BLAST results are available for this feature:

BLAST of HG10019149 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462875.1	6.9e-104	99.49	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA00...	[more]
XP_038877304.1	9.0e-104	98.98	polyadenylate-binding protein 2-like [Benincasa hispida]	[more]
XP_011653388.1	3.4e-103	98.48	polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothe...	[more]
XP_022140995.1	3.8e-102	97.46	polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]	[more]
XP_008462873.1	4.9e-102	97.03	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo]	[more]

BLAST of HG10019149 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	2.6e-77	76.04	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	2.2e-76	75.00	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	1.6e-63	68.45	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	7.8e-34	50.57	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	2.8e-31	41.83	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of HG10019149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2R3	3.3e-104	99.49	Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CHX7	3.3e-104	99.49	polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KXZ1	1.7e-103	98.48	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV...	[more]
A0A6J1CGQ3	1.8e-102	97.46	polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CIE7	2.4e-102	97.03	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10019149 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	1.8e-78	76.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	1.5e-77	75.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	3.7e-71	75.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	1.1e-64	68.45	polyadenylate-binding protein 1	[more]
AT5G51120.2	2.1e-58	55.80	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 4..193
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 4..193
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 70..141 e-value: 1.99656E-49 score: 153.216
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 70..141 e-value: 3.7E-23 score: 92.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 71..139 e-value: 1.3E-17 score: 63.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 69..145 score: 17.011795
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..142 e-value: 3.2E-29 score: 103.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019149.1	HG10019149.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding