HG10019146 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019146
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribonuclease T(2)
Location	Chr04: 17596801 .. 17601039 (-)
RNA-Seq Expression	HG10019146
Synteny	HG10019146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGCCAGTGGTGTTTCTTCTTCTTCTTCAGCTGCTGGCAGTGGCTTTCGGGTTCACGGCGGGGGCCCCGAGCGGCGGTGAGCAGAGGGAATTTGACTACTTTGTGTTGGCTCTTCAATGGCCAGCTACTTCTTGCAAAAACACTGGCAAGTGTTGTCCTGCCAATGGTTGCTGCCGCGGGTGAGTTTAATATCTCATTGGATAATTATTTAGTTTTTATTTTTAAATAATTTATTTTTGTTTTTAGATTTTAACTCTAAATTCAGATATTTTTCTTAGAAAATACAAAAACTATCGTAAATAAATTGGAATAAACAAGATAAAAATTCAACTGATTATTATTATTGGGTGAAATGTGCGTAAATTTTATTAATTAATAAACATAGATTCAAAATACTTTTTTCTTATTGAATGAAACTATCAAGTCACATTGTGATAATTTCTCCAAATAATTTATTGGAGTTTTAGTTTTTTTTTTTCTCTCGATTGAGTTGGGACCTAACGATTTTTTTTTTTTTTTTTTTTTATTGTCTGTCTAGAGATGACTCTCCCACTGAATTTACAATCCGTAAGTTGGAAACTAATAAGCTTCTCTAAGCTTTGGAATTTTGTTAATTTTTATTTGGCTATTTAATTTTGTGTAATGGAATTAATAATATAAACTTGTGTGTGTTAAAATGCGATAGATGGATTGTGGCCTCAGTATAATGAGAAAGGATGGCCATCTTGTTGCACTGATGCAAACTTTGATGAAAATGAGGTTCCTTTCTTTTTCTTTTTATTTTTTTTTATTTTTTTTTATTTTTTTATTATTATTGTTTTTTCAATCCAATTTCTCTCCATTATTATTTAGATCCGCTCATGTGGGATGGTAGTTTGTTCATATTTAAATATTTTTATGATTATTTTTATTTTATTTTTAGAATTATCTATTTAGGTTGATATAGATACAAAATTCAGATCTTGACATTTTCATCTATATCAACACTTTTTAAATAATCCTACCAACGTTTCATGTTGCGTACGTGCATGTATATTTTTATCGGAAAAATTTCTCTTTCAACTATATCCTATATAAATATATTTTTTTTTGGTAAAAGAAAGGGAAGTATAAAACGGACCTAATTATTCTCCTACATATATATTCAAAAGATTAAATCTATTTTAATTCTATTAGTCAAAGCTTCTCAATTGGCAGTGTTTTAATATTATATATATTCAGAAAAAAAACTAACTTGAAAACAATTCAATGGGAAGACGGGAAAAGATTCTTGCTATAAGAAGTATAAATAAAGCAAAACAAAGTAACGTTACATTTTTTAAGAATATCATTCCAATAATAGTATTTATAATTTCACACGACACTAAAAGTAGAGAATTCACTTGTTTCAAAAAAAAGAAAAAAAAATAGAGAATTCACTAAAAAAAACCCTTATTTATTAATTATGAAGGAGAGATTGAACCAAAATAAAAATTAATATATTATTCAAGTTATACTCAGATTGACTAACATTTAGCAGATTAATACTTTGACGGAAGATATTCAAAAGTATTGGCCAACTTATCGATGTGGTACTACATCTACATGTCATAGAACGAAGGGATCATTTTGGGCTCATGAGGTTCAAATTATTCCCTCTCGCTCTTTATTCTTCCTTCTTTAGCTCATCTATATCCAAGTTTGAGACTAATATCAAATTTTTCTCTCTCTTTTTTTTTTTTTGGTTATTATATGATGATGGGCATTTGAAATGTTACCATTGCTATAGTATGGTAAGTTTCTTCTTTAATTTATTTTTTTCTTTTGGAATATATATTGTTTTATTTAGGGAAAATAACTTTTTGGTTCTTAGGTTTGGGTCTAGTTTTCATTTGCTCTCTAAATTTAAAAATGTTATATATTTAGTCTTTAAATTTTGAATTTTGTTTCAATTTAGTCAGTAAATTTTAAAATGATACAATTTTATCTTTGAGATTTAAGTTTTATTGTTGCAATTCGGTTCATACAAAACTAAAATCTCAATGATGAAATTGTAACTATTTTGAAACTTAGAGGCTAAATTGAAACCAAACTCAAAAGGGAAATTTTCACCGATAGAAAAAATGTCAAACTATTTACAAAAAATAGCAAAAAAAAAAACATTGATAGACATTGATAGACTTCTATCAGCATCTATCAATGATAGACTTCTATCATTTCTATGACTGATAAACTTCTATCAGCATCTATCACAACTATCTAAAAATTTTGCTATTTTGTGTAAATAGTTTTCTTTATTTTTCTATTTTTAAAAATGCCCCAATTCAAAATTTAAAAACTAAATATGTAACATTTTAAAATTTCATAAACTAAATCCAAAAGTTATAGACTAAAAAGATATTCTTCCGACTTAAACTTAAAAGCATCATTTTATAATTAAAACTATTTCTTGGGTAGAGAAACATGGGACATGTGCAGCTCCTGTAATTGTGGGAGAATATGATTACTTCTTGACAACCCTCACCATCTTCTCCAAGTACAATGTCACTGTAAGCTATTAAAAAAATGGAATTTCTCCTTATTTCTTTATCGGACCGGAAAATTATTATAAATAAAAAAAATATCAAACTATTTAAAAATATAGAAAAATTTTCCTATCTATCAGCAATAAAAGTCTATCGCTGATCAACTGTAAAAATTTTCAATACTTATAAATAATTTGGTTCATTTTTTTATATTTGAAAATAGCTTCTATCCGGCTGTTATAATTATTATAAAATAAATTCAATTATTGAGTTTGGTATTAAAATTGGGTGTCTTTCCATTTAATTGTTAACAGAAAGTTTTGAGTGATGCTGGATTTGTAGCTTCCAATACTGAAAAGTATCCTATTGAAGATGTGGTAGCTGCCATTCAGAATGAATTCAATGCAACTCCAAAGATTACCTGTGCTAAAAAGGGAGTTGTCAAAGAACTTTGGTTATGTTTTGACAAAAGTTTTGAGGTAGGATTTTTCTAATTTTTAACTTTAGTTACGTATATGTTTTATGGGCTCTAATATCATATTAGATAGGAGTGTTCATGGGTTGGGTTGAAATATTTTTTAGGTTCAACCCAATTGGTTGGGTTTAAAGTATCTTCAACTCAAATAACTCTTATTAACTCAACCCAATACAACCACGAAACATTTGGGTTAGGTTGGTTCGGGTCACTCGAGTCGTTTATTTAAATTTTTTTTCTAAAATGAAGTAAAATGTTAATATGTAAAAATTGTATTTAATTATTTTTATATATTGAATTAAAATTAACAACTCAATTCAATTTATATTACGAAAATTTTCTTTCTAAAGTGTTAAAACATTATTTTTAGGAGTAGTTGAAAAATAAAAATATGAAATTGAGCAAAATTATGTATATGTGTAATTGTATCATAAGTAAAAAAAAAAAAAACATACTTTTTAAAATTAACAATAAGTTCTGGTTGGTTTGAGTTATTTTAAGTGAACCCATGAACCAATCCAACCCATATAATTTTTATTTATTTCAACTCAATCCAATCCAAATGAGTTGATAACCCTACCCAAACCGCACGGGTTAGGTTGGGTTTATCGAATTTTTCAGTCATCAAATTTTTTTAACACCCCTAATATTAGATTAACATGAAGTTTCTTCTAAAAAATCAATTGACCATGAAATGAGAGTAACCCAGGTATGGATCGATTCTCTTAACATTTTTTGTGTTCATGAAATCAAATAAAACTAAATTAATTAAGCCTCGTTTAGTAAGTATTTAGTTTCTTATTTTTATTTTTGAGAATTAAATCTATTTTATTTTAATTTCTTAGCTAAATTCAAAAAACAAAATCAAGTTTTTAAAAACTACTTTTTTTTTTTTTTTTTTTAGTTCTCGAACTTGACTTAATTTTTTAAAATTTTAGTAAAAATTAGTAGATAAGAAATTTAGAGGTGGAATAAGTGTTTATAGACTAAATCTTTACTTGTTGCAGCCACGTGATTGCGATCTAGCGAATTCATGCCCCGATTTCATTAAGCTCCCAACATATGAGGCTCAGGGTATGTTTTTCTTTTTCTTAAAGAAATTAAGCTTAATTAAGCTAATGGATTAATAATATGATATATTTAATCTTGTTTAATATATTCTTTTAACATTAATATTGTGTTATATGTGATACAGAACCTAACAAGGTTGAAGGAGCAATTCCATGGATTGCTGATGCTGAAGAAATTATTTAA

mRNA sequence

ATGGCGGCGCCAGTGGTGTTTCTTCTTCTTCTTCAGCTGCTGGCAGTGGCTTTCGGGTTCACGGCGGGGGCCCCGAGCGGCGGTGAGCAGAGGGAATTTGACTACTTTGTGTTGGCTCTTCAATGGCCAGCTACTTCTTGCAAAAACACTGGCAAGTGTTGTCCTGCCAATGGTTGCTGCCGCGGAGATGACTCTCCCACTGAATTTACAATCCAGAAACATGGGACATGTGCAGCTCCTGTAATTGTGGGAGAATATGATTACTTCTTGACAACCCTCACCATCTTCTCCAAGTACAATGTCACTAAAGTTTTGAGTGATGCTGGATTTGTAGCTTCCAATACTGAAAAGTATCCTATTGAAGATGTGGTAGCTGCCATTCAGAATGAATTCAATGCAACTCCAAAGATTACCTGTGCTAAAAAGGGAGTTGTCAAAGAACTTTGGTTATGTTTTGACAAAAGTTTTGAGCCACGTGATTGCGATCTAGCGAATTCATGCCCCGATTTCATTAAGCTCCCAACATATGAGGCTCAGGAACCTAACAAGGTTGAAGGAGCAATTCCATGGATTGCTGATGCTGAAGAAATTATTTAA

Coding sequence (CDS)

ATGGCGGCGCCAGTGGTGTTTCTTCTTCTTCTTCAGCTGCTGGCAGTGGCTTTCGGGTTCACGGCGGGGGCCCCGAGCGGCGGTGAGCAGAGGGAATTTGACTACTTTGTGTTGGCTCTTCAATGGCCAGCTACTTCTTGCAAAAACACTGGCAAGTGTTGTCCTGCCAATGGTTGCTGCCGCGGAGATGACTCTCCCACTGAATTTACAATCCAGAAACATGGGACATGTGCAGCTCCTGTAATTGTGGGAGAATATGATTACTTCTTGACAACCCTCACCATCTTCTCCAAGTACAATGTCACTAAAGTTTTGAGTGATGCTGGATTTGTAGCTTCCAATACTGAAAAGTATCCTATTGAAGATGTGGTAGCTGCCATTCAGAATGAATTCAATGCAACTCCAAAGATTACCTGTGCTAAAAAGGGAGTTGTCAAAGAACTTTGGTTATGTTTTGACAAAAGTTTTGAGCCACGTGATTGCGATCTAGCGAATTCATGCCCCGATTTCATTAAGCTCCCAACATATGAGGCTCAGGAACCTAACAAGGTTGAAGGAGCAATTCCATGGATTGCTGATGCTGAAGAAATTATTTAA

Protein sequence

MAAPVVFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRGDDSPTEFTIQKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVVAAIQNEFNATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNKVEGAIPWIADAEEII

Homology

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BLAST of HG10019146 vs. NCBI nr
Match: XP_038876700.1 (ribonuclease 2-like [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 2.0e-95
Identity = 185/258 (71.71%), Postives = 191/258 (74.03%), Query Frame = 0


Query: 1   MAAPVVFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC 60
           MAAPVVF LLLQLLAVAFGFTA APSG EQREFDYFVLALQWPATSCKN GKCCPANGCC
Sbjct: 11  MAAPVVF-LLLQLLAVAFGFTAVAPSGSEQREFDYFVLALQWPATSCKNPGKCCPANGCC 70

Query: 61  RGDDSPTEFTI------------------------------------------------- 120
           RG DSPTEFTI                                                 
Sbjct: 71  RGVDSPTEFTIHGLWPQYNDRGWPSCCTDANFNENEINILAEDIQKYWPTYRCGTTSTCH 130

Query: 121 -----------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPI 180
                      +KHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVL+DAGFVASNTEKYPI
Sbjct: 131 RTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLNDAGFVASNTEKYPI 190

Query: 181 EDVVAAIQNEFNATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQE 199
           EDVVAAI+NEFN+TPKITCAKKGVVKELW+CFDKSFEPRDCDL NSCPDFIKLPTY+ QE
Sbjct: 191 EDVVAAIKNEFNSTPKITCAKKGVVKELWICFDKSFEPRDCDLQNSCPDFIKLPTYDPQE 250

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BLAST of HG10019146 vs. NCBI nr
Match: TYK29936.1 (ribonuclease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 3.7e-89
Identity = 169/239 (70.71%), Postives = 183/239 (76.57%), Query Frame = 0


Query: 4   PVVFL-LLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRG 63
           P+VFL L+++LL V FGF+A APSG EQREFDYFVLALQWPATSCKN GKCCP+N CCRG
Sbjct: 10  PMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKCCPSNACCRG 69

Query: 64  DDSPTEFTI------------------------------------------QKHGTCAAP 123
            DSPTEFTI                                          +KHGTCAAP
Sbjct: 70  ADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRCEKHGTCAAP 129

Query: 124 VIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVVAAIQNEF-NATPKITC 183
           V+VGEYDYFLT LTIFSKYNVTKVLS+ GFVASNTEKYPIEDV+AAI+N+F NATPKITC
Sbjct: 130 VLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIEDVIAAIKNKFYNATPKITC 189

Query: 184 AKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNKVEGAIPWIADAEEII 199
           AKKGVVKELWLCFDKSFEPRDC+L +SCPDFIKLPTYE QEPNKVEGAIPWIAD EEII
Sbjct: 190 AKKGVVKELWLCFDKSFEPRDCNLQHSCPDFIKLPTYEPQEPNKVEGAIPWIADVEEII 248

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BLAST of HG10019146 vs. NCBI nr
Match: KAA0061176.1 (ribonuclease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 332.4 bits (851), Expect = 2.6e-87
Identity = 169/255 (66.27%), Postives = 183/255 (71.76%), Query Frame = 0


Query: 4   PVVFL-LLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRG 63
           P+VFL L+++LL V FGF+A APSG EQREFDYFVLALQWPATSCKN GKCCP+N CCRG
Sbjct: 10  PMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKCCPSNACCRG 69

Query: 64  DDSPTEFTI--------------------------------------------------- 123
            DSPTEFTI                                                   
Sbjct: 70  ADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRCGTSSTCHRT 129

Query: 124 -------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVV 183
                  +KHGTCAAPV+VGEYDYFLT LTIFSKYNVTKVLS+ GFVASNTEKYPIEDV+
Sbjct: 130 KGSFWAHEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIEDVI 189

Query: 184 AAIQNEF-NATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNK 199
           AAI+N+F NATPKITCAKKGVVKELWLCFDKSFEPRDC+L +SCPDFIKLPTYE QEPNK
Sbjct: 190 AAIKNKFYNATPKITCAKKGVVKELWLCFDKSFEPRDCNLQHSCPDFIKLPTYEPQEPNK 249

[Close]

BLAST of HG10019146 vs. NCBI nr
Match: XP_008462866.1 (PREDICTED: ribonuclease 2-like [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 4.5e-87
Identity = 169/257 (65.76%), Postives = 183/257 (71.21%), Query Frame = 0


Query: 4   PVVFL-LLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRG 63
           P+VFL L+++LL V FGF+A APSG EQREFDYFVLALQWPATSCKN GKCCP+N CCRG
Sbjct: 10  PMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKCCPSNACCRG 69

Query: 64  DDSPTEFTI--------------------------------------------------- 123
            DSPTEFTI                                                   
Sbjct: 70  ADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRCGTSSTCHRT 129

Query: 124 ---------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIED 183
                    +KHGTCAAPV+VGEYDYFLT LTIFSKYNVTKVLS+ GFVASNTEKYPIED
Sbjct: 130 KGSFWAHEYEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIED 189

Query: 184 VVAAIQNEF-NATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEP 199
           V+AAI+N+F NATPKITCAKKGVVKELWLCFDKSFEPRDC+L +SCPDFIKLPTYE QEP
Sbjct: 190 VIAAIKNKFYNATPKITCAKKGVVKELWLCFDKSFEPRDCNLQHSCPDFIKLPTYEPQEP 249

[Close]

BLAST of HG10019146 vs. NCBI nr
Match: XP_004137162.1 (ribonuclease 2 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.8e-86
Identity = 167/254 (65.75%), Postives = 178/254 (70.08%), Query Frame = 0


Query: 6   VFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRGDDS 65
           V ++LLQLL V FGF+A APS  EQREFDYFVLALQWP +SCKN GKCCP+N CCRG +S
Sbjct: 14  VVVVLLQLLTVVFGFSAEAPSSSEQREFDYFVLALQWPGSSCKNPGKCCPSNACCRGAES 73

Query: 66  PTEFTI------------------------------------------------------ 125
           PTEFTI                                                      
Sbjct: 74  PTEFTIHGLWPQYNEKGWPSCCTDASFNENEINILTEDIQKYWPTYRCGTTSTCHQTKGS 133

Query: 126 ------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVVA 185
                 +KHGTCAAPVIVGEYDYFLTT+TIFSKYNVTKVLSDAGFVASNTEKYPIEDVVA
Sbjct: 134 FWAHEYEKHGTCAAPVIVGEYDYFLTTITIFSKYNVTKVLSDAGFVASNTEKYPIEDVVA 193

Query: 186 AIQNEF-NATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNKV 199
           AI+NEF NATPKI+CAKKG VKELWLCFDKSFEPRDC+L NSCPDFIK PTYE QEPNKV
Sbjct: 194 AIKNEFNNATPKISCAKKGAVKELWLCFDKSFEPRDCNLPNSCPDFIKFPTYEPQEPNKV 253

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BLAST of HG10019146 vs. ExPASy Swiss-Prot
Match: P42814 (Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-40
Identity = 94/242 (38.84%), Postives = 124/242 (51.24%), Query Frame = 0


Query: 1   MAAPVVFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC 60
           MA+ +  LLL+  +A AF           QREFDYF L+LQWP T C+ T  CC  N CC
Sbjct: 1   MASRLCLLLLVACIAGAFAGDV-IELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACC 60

Query: 61  RGDDSPTEFTI------------------------------------------------- 120
           RG D+PT+FTI                                                 
Sbjct: 61  RGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCN 120

Query: 121 -----------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPI 177
                      +KHGTC++PV   EY+YFLTTL ++ K+NVT VL  AG+VASN+EKYP+
Sbjct: 121 GGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPL 180

[Close]

BLAST of HG10019146 vs. ExPASy Swiss-Prot
Match: Q7M456 (Ribonuclease Oy OS=Crassostrea gigas OX=29159 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 73  KHGTCAA--PVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVVAAIQNE 132
           KHGTCA   P    E  YF   L + +KYN++++L + G + S T  Y I +  AA++ E
Sbjct: 92  KHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRE 151

Query: 133 FNATPKITC------AKKGVVKELWLCFDKSFEPRDCD 163
                 I C       KK ++ E+ +C  K FE   C+
Sbjct: 152 LGVDAVIECVYDKEKTKKQLLYEISICLTKEFELISCN 189

[Close]

BLAST of HG10019146 vs. ExPASy Swiss-Prot
Match: Q4WXZ5 (Ribonuclease T2-like OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rny1 PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-07
Identity = 40/127 (31.50%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 61  RGDDSPT-EFTIQKHGTCAAPVIVGEY----------DYFLTTLTIFSKYNVTKVLSDAG 120
           RGDD    E    KHGTC + +    Y          DYF  T+ IF K    + L++AG
Sbjct: 133 RGDDEDLWEHEWNKHGTCISTLETTCYADYYPQQEVVDYFNKTVEIFQKLPTYQTLANAG 192

Query: 121 FVASNTEKYPIEDVVAAIQNEFNATPKITCAKKGVVKELWLCFD-------KSFEPRDCD 169
            V S+TE Y ++++ AA+     A   I C  +  + E+W  F+        +F P + D
Sbjct: 193 IVPSHTETYTLDEIQAALAKAHAAPVTIRCRNR-ALNEVWYHFNIAGSLQTGTFVPSEPD 252

[Close]

BLAST of HG10019146 vs. ExPASy TrEMBL
Match: A0A5D3E236 (Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00240 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.8e-89
Identity = 169/239 (70.71%), Postives = 183/239 (76.57%), Query Frame = 0


Query: 4   PVVFL-LLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRG 63
           P+VFL L+++LL V FGF+A APSG EQREFDYFVLALQWPATSCKN GKCCP+N CCRG
Sbjct: 10  PMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKCCPSNACCRG 69

Query: 64  DDSPTEFTI------------------------------------------QKHGTCAAP 123
            DSPTEFTI                                          +KHGTCAAP
Sbjct: 70  ADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRCEKHGTCAAP 129

Query: 124 VIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVVAAIQNEF-NATPKITC 183
           V+VGEYDYFLT LTIFSKYNVTKVLS+ GFVASNTEKYPIEDV+AAI+N+F NATPKITC
Sbjct: 130 VLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIEDVIAAIKNKFYNATPKITC 189

Query: 184 AKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNKVEGAIPWIADAEEII 199
           AKKGVVKELWLCFDKSFEPRDC+L +SCPDFIKLPTYE QEPNKVEGAIPWIAD EEII
Sbjct: 190 AKKGVVKELWLCFDKSFEPRDCNLQHSCPDFIKLPTYEPQEPNKVEGAIPWIADVEEII 248

[Close]

BLAST of HG10019146 vs. ExPASy TrEMBL
Match: A0A5A7V3T6 (Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00520 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 169/255 (66.27%), Postives = 183/255 (71.76%), Query Frame = 0


Query: 4   PVVFL-LLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRG 63
           P+VFL L+++LL V FGF+A APSG EQREFDYFVLALQWPATSCKN GKCCP+N CCRG
Sbjct: 10  PMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKCCPSNACCRG 69

Query: 64  DDSPTEFTI--------------------------------------------------- 123
            DSPTEFTI                                                   
Sbjct: 70  ADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRCGTSSTCHRT 129

Query: 124 -------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVV 183
                  +KHGTCAAPV+VGEYDYFLT LTIFSKYNVTKVLS+ GFVASNTEKYPIEDV+
Sbjct: 130 KGSFWAHEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIEDVI 189

Query: 184 AAIQNEF-NATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNK 199
           AAI+N+F NATPKITCAKKGVVKELWLCFDKSFEPRDC+L +SCPDFIKLPTYE QEPNK
Sbjct: 190 AAIKNKFYNATPKITCAKKGVVKELWLCFDKSFEPRDCNLQHSCPDFIKLPTYEPQEPNK 249

[Close]

BLAST of HG10019146 vs. ExPASy TrEMBL
Match: A0A1S3CHX1 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501148 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 169/257 (65.76%), Postives = 183/257 (71.21%), Query Frame = 0


Query: 4   PVVFL-LLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRG 63
           P+VFL L+++LL V FGF+A APSG EQREFDYFVLALQWPATSCKN GKCCP+N CCRG
Sbjct: 10  PMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKCCPSNACCRG 69

Query: 64  DDSPTEFTI--------------------------------------------------- 123
            DSPTEFTI                                                   
Sbjct: 70  ADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRCGTSSTCHRT 129

Query: 124 ---------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIED 183
                    +KHGTCAAPV+VGEYDYFLT LTIFSKYNVTKVLS+ GFVASNTEKYPIED
Sbjct: 130 KGSFWAHEYEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIED 189

Query: 184 VVAAIQNEF-NATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEP 199
           V+AAI+N+F NATPKITCAKKGVVKELWLCFDKSFEPRDC+L +SCPDFIKLPTYE QEP
Sbjct: 190 VIAAIKNKFYNATPKITCAKKGVVKELWLCFDKSFEPRDCNLQHSCPDFIKLPTYEPQEP 249

[Close]

BLAST of HG10019146 vs. ExPASy TrEMBL
Match: A0A0A0L0P9 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_4G109540 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 167/254 (65.75%), Postives = 178/254 (70.08%), Query Frame = 0


Query: 6   VFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCCRGDDS 65
           V ++LLQLL V FGF+A APS  EQREFDYFVLALQWP +SCKN GKCCP+N CCRG +S
Sbjct: 14  VVVVLLQLLTVVFGFSAEAPSSSEQREFDYFVLALQWPGSSCKNPGKCCPSNACCRGAES 73

Query: 66  PTEFTI------------------------------------------------------ 125
           PTEFTI                                                      
Sbjct: 74  PTEFTIHGLWPQYNEKGWPSCCTDASFNENEINILTEDIQKYWPTYRCGTTSTCHQTKGS 133

Query: 126 ------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPIEDVVA 185
                 +KHGTCAAPVIVGEYDYFLTT+TIFSKYNVTKVLSDAGFVASNTEKYPIEDVVA
Sbjct: 134 FWAHEYEKHGTCAAPVIVGEYDYFLTTITIFSKYNVTKVLSDAGFVASNTEKYPIEDVVA 193

Query: 186 AIQNEF-NATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQEPNKV 199
           AI+NEF NATPKI+CAKKG VKELWLCFDKSFEPRDC+L NSCPDFIK PTYE QEPNKV
Sbjct: 194 AIKNEFNNATPKISCAKKGAVKELWLCFDKSFEPRDCNLPNSCPDFIKFPTYEPQEPNKV 253

[Close]

BLAST of HG10019146 vs. ExPASy TrEMBL
Match: A0A6J1EA39 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430737 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.9e-83
Identity = 164/258 (63.57%), Postives = 178/258 (68.99%), Query Frame = 0


Query: 1   MAAPVVFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC 60
           + AP VFLL+LQL+AV     A  PSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC
Sbjct: 12  VVAPAVFLLVLQLVAVV--LAAETPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC 71

Query: 61  RGDDSPTEFTI------------------------------------------------- 120
           RG DSPTEFTI                                                 
Sbjct: 72  RGADSPTEFTIHGLWPQYNEKGWPSCCTDAVFSQNEITLLKEDIEKYWPTYRCGTTSNCH 131

Query: 121 -----------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPI 180
                      +KHGTCAAPVIVGE+DYFLTTLTIFSKYNVTK LSDAGFVASNTEKYP+
Sbjct: 132 GTKGSFWAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKALSDAGFVASNTEKYPL 191

Query: 181 EDVVAAIQNEFNATPKITCAKKGVVKELWLCFDKSFEPRDCDLANSCPDFIKLPTYEAQE 199
           EDVV A++N  N+TPKI+CAKKG VKELW+CFDK FEPRDCDLANSCP+FIKLPTYE Q+
Sbjct: 192 EDVVDAVKNATNSTPKISCAKKGAVKELWICFDKKFEPRDCDLANSCPEFIKLPTYEPQD 251

[Close]

BLAST of HG10019146 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 )

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-41
Identity = 94/242 (38.84%), Postives = 124/242 (51.24%), Query Frame = 0


Query: 1   MAAPVVFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC 60
           MA+ +  LLL+  +A AF           QREFDYF L+LQWP T C+ T  CC  N CC
Sbjct: 1   MASRLCLLLLVACIAGAFAGDV-IELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACC 60

Query: 61  RGDDSPTEFTI------------------------------------------------- 120
           RG D+PT+FTI                                                 
Sbjct: 61  RGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCN 120

Query: 121 -----------QKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLSDAGFVASNTEKYPI 177
                      +KHGTC++PV   EY+YFLTTL ++ K+NVT VL  AG+VASN+EKYP+
Sbjct: 121 GGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPL 180

[Close]

BLAST of HG10019146 vs. TAIR 10
Match: AT2G39780.2 (ribonuclease 2 )

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-30
Identity = 80/212 (37.74%), Postives = 111/212 (52.36%), Query Frame = 0


Query: 1   MAAPVVFLLLLQLLAVAFGFTAGAPSGGEQREFDYFVLALQWPATSCKNTGKCCPANGCC 60
           MA+ +  LLL+  +A AF           QREFDYF L+LQWP T C+ T  CC  N CC
Sbjct: 1   MASRLCLLLLVACIAGAFAGDV-IELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACC 60

Query: 61  RGDDSPTEFTIQKHG-----------TCA---------APVIVGEYDYFLTTLTIFSK-- 120
           RG D+PT+FTI  HG           +C             ++   + +  +L+  S   
Sbjct: 61  RGSDAPTQFTI--HGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSS 120

Query: 121 --------YNVTKVLSDAGFVASNTEKYPIEDVVAAIQNEFNATPKITCAKKGVVKELWL 177
                   +    VL  AG+VASN+EKYP+  +V AIQN F+ TP++ C K+  + E+ +
Sbjct: 121 CNGGKGSFWGHEDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRI 180

[Close]

BLAST of HG10019146 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 49/206 (23.79%), Postives = 81/206 (39.32%), Query Frame = 0


Query: 30  QREFDYFVLALQWPATSCKNTGKCC-PANGCCRGD---------------------DS-- 89
           Q +FD+F   LQWP   C  +  CC P +G    D                     DS  
Sbjct: 25  QEDFDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWPNYNGGSWPSNCDPDSQF 84

Query: 90  ----------------PT------------EFTIQKHGTCAAPVIVGEYDYFLTTLTIFS 149
                           PT            E   +KHGTC+  V + +++YF   L +  
Sbjct: 85  DRSQISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESV-MDQHEYFENALKLKQ 144

Query: 150 KYNVTKVLSDAGFVASNTEKYPIEDVVAAIQNEFNATPKITCAK----KGVVKELWLCFD 177
           K N+ ++L ++G +  +   Y ++ +  AI++    TP I C K       + ++++C D
Sbjct: 145 KANLLQILKNSG-INPDDGFYNLDKITNAIKDGIGFTPGIECNKDPERNAQLHQIYICVD 204

The following BLAST results are available for this feature:

BLAST of HG10019146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876700.1	2.0e-95	71.71	ribonuclease 2-like [Benincasa hispida]	[more]
TYK29936.1	3.7e-89	70.71	ribonuclease 2-like [Cucumis melo var. makuwa]	[more]
KAA0061176.1	2.6e-87	66.27	ribonuclease 2-like [Cucumis melo var. makuwa]	[more]
XP_008462866.1	4.5e-87	65.76	PREDICTED: ribonuclease 2-like [Cucumis melo]	[more]
XP_004137162.1	3.8e-86	65.75	ribonuclease 2 [Cucumis sativus]	[more]

BLAST of HG10019146 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42814	1.5e-40	38.84	Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1	[more]
Q7M456	2.5e-08	33.67	Ribonuclease Oy OS=Crassostrea gigas OX=29159 PE=1 SV=1	[more]
Q4WXZ5	8.2e-07	31.50	Ribonuclease T2-like OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS...	[more]

BLAST of HG10019146 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E236	1.8e-89	70.71	Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00...	[more]
A0A5A7V3T6	1.3e-87	66.27	Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00...	[more]
A0A1S3CHX1	2.2e-87	65.76	Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501148 PE=3 SV=1	[more]
A0A0A0L0P9	1.8e-86	65.75	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_4G109540 PE=3 SV=1	[more]
A0A6J1EA39	1.9e-83	63.57	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430737 PE=3 SV=1	[more]

BLAST of HG10019146 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39780.1	1.0e-41	38.84	ribonuclease 2	[more]
AT2G39780.2	1.4e-30	37.74	ribonuclease 2	[more]
AT1G14220.1	1.7e-07	23.79	Ribonuclease T2 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 72..161 e-value: 1.1E-21 score: 77.9
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 72..165 coord: 24..72
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 29..71 e-value: 4.0E-9 score: 38.8 coord: 72..178 e-value: 7.1E-32 score: 113.1
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 32..174
None	No IPR available	PANTHER	PTHR11240:SF51	RIBONUCLEASE 2	coord: 72..165 coord: 24..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019146.1	HG10019146.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding