HG10019076 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019076
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiongeneral transcription factor 3C polypeptide 5-like
LocationChr04: 15919907 .. 15928843 (+)
RNA-Seq ExpressionHG10019076
SyntenyHG10019076
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGCTGAAAGACAACACTATCTCAGGGCTCTTACCTACTGCCCAGATTTTTGCAGTTCACTATCCTGGTTATCCTTTGTCCAAGCGTCGGGCAATTGAAAGTCTAGGAGGAACACAATCAATTCTCAAGGTATAATTAATAGTTGATATAAAAAAAACTGGAAATCATTTTGAAATGTTCAAAGTTCCTCTTTTAGAGTTTGAAGTTTCCCTCTTAATATAAGACCTGACTGATTTATAAATATTTTGTTTTTTGCGTCTAGTTATGCATAGGTCTCATCGCTAATAAACCAATGCTTCCTTGTGGAACCAAAGAGGGCTGTGGCATTGAATTCATTATTTGGGAGTTGAAGTTTGATCAAATTAAGGAACTTTTTTTAGGGTCTAGGGTTTTAAAAAAAATTATTGCTCATTTTCTGTAGGTTGACATTGTAACATAATTTGATTTGAGAAATTCCATTTCTTCTCATGATTAGAATAAATTCCAGTAAACAATTTGGCAGGCCCTTTATTGTGAAAACATATTCTAGAAAGAGTAGAAAGGGAAATTTCCCTCTAGACAATTGATTAGTGGGTTGGGTTATTTATCGTGGAGAGGGTCATTGTATTTGTGGGGAAGGAGAGGAATGTTTGAGAACATTGTGAACGTTAGCAGAGGAGATGGTAGGGAGGATTGGCTACCAGCTATCTAAGACTAGATTGATTTTATGGTTTGTGAGTTTGCTAGTAGCGGTTGTCACCTGGTTAGTTGGGAGGTTGCGGCTAATCTAATGGAGCTTAAGGTTTGGGTATAGGGAGTCTTAGGATGTGAACAAGGCCTTGTTGGCTAAGTAGTTGTGGTTCTTTCCTCATGAATCAGACAATTTATGGTATAAGGTTGTTGTTAGTACATATAGCCTCGCCCATTTTCTTGGCCCTTGAAGAGGAAAGGTATTACCAGAAATCCTTGGAAAGCTATTTTGAATTGGCTCCCTTTCTTTTCTCGGTGATGGAATGAGTACTTATTTCTAGAAAGATAAATGGTTGGGGATTGGATAGCCCCTTTTGTGCTTTGTTTCTTCGTTTTTACCATTTACCCAATTCAAAATTCTCCTTTGTGGCTTACATCCTTCTTTTGAAAAAATCTATTTTCCTTGATCTCAGCTGTCCCCGTTCTAACATGGAGGTTAGTGATATTTCGTGCTTGATTTAATTGGCGATTTTACTGTCTAAGAGTGAAGTGACTGGCGGGTTTGGAGTCCTAGTCCTTCAAACGAGTTCTCCTGTAAGTTGTTATTTGGATGTCAGGTGGGCCCTCTTCTTCTTGAAATTCTCCCTTCTTTTCTCATCTTTGGAAGATTAAAATTTCAACAAAGGTCAATAACGAAAGACAAGCTCCATTTTGTACTTCACATATATCAACGAAGAGGTCAATCTTGCATAATAACTAAATTCTTCTTCATGGTGCTCATTATTGAAGAAGTTTGCGAGGTTCTCCATTTAGGATATTTACAAAAACTGGAATGCTTTCATTTTCCCTATTTACTTGGTCTAGCTTTCTTGGTTATGTTCTTCTTTTGTCCTTCATATTTTTTATGTTATGTTATCAGTTAGTGTTGTATTTTGTTTTGTGTATTTCTTTGCTCTTTTGGAGTTTTGTATCCTTGAACATTGGTCTCTTTTCATTTTTTCAATGAAAAACATCGTATCTTCTAAAAAAAACTAGGAAAAAATATCAATTTATACCTCTAAACTTGAGGGGTTGTATCAATTTAAACCCTGAACTAATAATTGTATCGATTTAAACACTAAACTTTTGTAAGTGTATCAATTTACACTCTCCATTATGTTTCGTTTGGAAAAACCTTATGTGAAACTTATAATTGTATCAATTAAACCTCTCAACTTTCATAAATGAATCAGTTTAAGACTCTTAGACAAAATTTTCTTTGAATATCGTCCATTCATTTACTTTAATCATCCATTTTGTAAAATCGACATTTGAAGAAGTGTTGGAGAATTAATGCATGGATGATTTTCAAAGATAGTCGTAGTGAAGTGTCTAAATTGATTGACTTATGAAAATTTAGGATTTTAATTGACTCAAATTTTAAGTTTTACAAAATACTAGTCAAACGAAATTTGGAGGAGGGTGTAACTGATACACTTACAAAAGTTTAAATTGATACAACTTCAAAATTTAGGGTTATAAATTGATATTTGCCCAAAAAAAACTAGAGGGAAAATTAAATACCTTTTTGGCCCCTATGTTTTAAGTAATAGGTGCATTTAGTCTCTGGGTTTTCAAAATGTACCTTTTTGGTTCTTATGTTTTGAAAAATAGGTTTAAAAGGTCTCTGTGGTTAGTTTTACCGTTAAGTAATTAACAGAATATGTTTTATTATATTTAATGCTGATATGGAAATTTGAAAGGTAAAAAAATAATAAAAAAACATGAACACCTCTCTCTTTCCTCCCTCCTCTCTCCCTCCATCTCCCTCCATCTTTCAACTATTAGCTGCCATCAATGTTCTTTAAGAAGACATAACCGATCGCCTGATAAAAAAATCATCCAAACTACCTTCATGTTGCCATTTTTAAAGCTTTTTTTTTTTCATTAGTCTGGGCTGTGCAATGTTTAGATGAAAAGAAAATGTAAAATAGAAGTATACTATTGCAACATTTTCTTTCTTCCTACCATTTCCCATTCCAACATTTAGATTCCGACTTTTCTAGGGGTTGTGCCTTCTCTAGAAAATTAACATTAGCATCCACAAGTTTAGTGACGTCGAAAAGGAATCATTGTGAAATTTTGGTTTTTTTTTTTTGTTGCATATGGGTCTCTTTATTTCTCTCAATCTTTAGATTGCTCTGTTTTAATAGTGGAAAAAAAAGAGGAGGAAAAAGGGCCATTGGTAGTCCATTTTAGAGAGATAAATAGAGAGACAGTAAAGTATCAAACCAGATTTCAAATCTAAAAGAAGATGGAGGAAAAGAAGAAAAGGAGATGGTAAAAATGGCACCAACACCTGCGTCTAGCGAGGAGGAGGTGTCAGAAGAGAAGGTCGGAGGCAATGGATGAGTGGTGCTGAAAGAGTGGGTGGGGATATGGGTGAATTTGAGGAGAAAGAGAGAAGAGAGGGAGTGGGTGAATGGGAGAACCAGAGAAGAAAGAGTGGTGTTTTTGCTTTTTTATTATTTTTTTTACCTTTTAAATTTCCATGTTAGCATTAAATATAATAAAAACTATTATGCTAATTACTTAATGGTAAAACTAACCACAGGGACCTTTTAAATTTATTTTTCAAACATAGGGATCAAAAAGGTACATTTTGAAAACTCAGCTATTAACACATCCCCGTAGGTGTACTAATTACTAAATCATCATTTAAAGATTCTAAGTTCATACTTAACATTTCAGCATGTCTAATAGATACAAAGGAATGTGTAGCACCAGAATCAATCAATACATACATAGGTAAATCACAAATTAACATCGTACTCGTGATTACGTCAAGTGTATCCTCGGCTTCCTTCTGCGTCATAGTATAAACTTTGCCTTGCTGTTTAGACCTACCTAGCCCCTTCGCCTTGGCACCACTAGTGCCTTCACCTGTATTCCCTCCTGATTTCACTTGACTCACTGTCTGAGACATAGCTTTTTGGTCTCTTCTATCTGTTGCAGTTTGAGGACAATCTCTCTTAAAATGCCCAGCTTGTTCACAATTATAACAAACATTCGAGCCACTGAAACACTGCCCGAAATGATACTTATCACATATAGGACACAGAGGTTTCCTCACTAAACGAGCTGTGGATTCTCCAGGTTGTCCCACCTGCGAACCAACCCCTGCCTCACTAGTAGCTCGTCTCTGATCTCGCCTCTGAGATCTACCTACTGAACCAGCTCTGGACCCAGATGGCCCACTACATCGAGGTTTAAATCTACCTCTCTGCTGAACCCCAGGCGTAAATCTCCTGGTATTATTCTATCTCGACCTCCGGCTCTATATCACCTGCCTCTGTCTATTTTTCAGCTAAACTCTTTTCAACTCTTATAACTGTCTCCACTAATTTAGTAAAATCAGCCCAGTCAGCACTAGCCGTTACAGGTGTTATGATCTCTACTCTTAAACCTTCCTCAAACTTCTTGCAACGATCTACCTCGTCAACTACGAGGTTCAATGCATACCTAGCAAGTTCAGTAAACTTCTTTTCATACTCAGCAACAGTCATAGAACCCTACTTAAGCCTCAGAAACTCACTCCTCTTAGCATCACAGTAAGATCTAGGATAATACTTCTCCTGGAATGCCTTTCTGAAATCATTCCAAAGCATTACTCCTCCATCACCTCTTCGAGCCTCGAAGAGTCTCCACCAGTCCTCTGCCCCTTTCTGGAGCAGGAAAGCAGCTAACTCCACCTCTCGATCCTCAGGGCACCTTATTACCCTGAAACATTTCTCAATCAAATTCAACCATGCCTCTGCATCTGCAGGATTCGTGGTACCCTCAAAAGATGTAGCCCCTAAGGCCTTCAGTCTCTCGATGCCAAACTTCCTCTCTGGATCAGTAGATACTGACCCTACACTGTCAACCAACCTCTGGGCTATCCTGTTAAAGATTGCTCTTCCATATTGGGCTCAACCTGCACATGAGGGTTACTAGACTCTTCCTCTGATACTGGAGCTCCTTTGCCGCTCCCAGTAGCTTCAGGTAATCCAGTGTCCTCTTGCCTACCTCGCTCGTGTGTTCGGGGCATGACTCCTAATAATATATCACACATTAGGACATTATAGTTATGATATGCTCCTAACTATATGCATGAGCCTAATCTTCCCTCCTTTTAAACCTAGAATTCCCATGAACTTATGATTTGATACCAACTTCAAATTCTAAATTCCGACGACGTTTATCGACATAACTTTTCTGTCGGTCTTGAGCTACCTTTAGGTTTTCCCTGATTAATTTTACATTCTCTGATGTCATCTGAACTAATTCGGGGCCATATAATTTCCTCTCCTACCTCATTCCAACATATAGGAGTTCTGCATCGTCTACCATATAAAGCCTCATAAGGTGCCATACCAATACTTGAATGGTAGCTATTATTATAAGCAAACTCTATTAAAGATAACTTATCATCCCCCGAACACACGAGCGAGGTAGGCAAGAGGACACTGGATTACCTGAAGCTACTGGGAGCGGCAAAGGAGCTCCAGTATCAGAGGAAGAGTCTAGTAACCCTCATGTGCAGGTTGAGCCCAATATGGAAGAGCAATCTTTAACAGGATAGCCCAGAGGTTGGTTGACAGTGTAGGGTCAGTATCTACTGATCCAGAGAGGAAGTTTGGCATCGAGAGACTGAAGGCCTTAGGGGCTACATCTTTTGAGGGTACCACGAATCCTGCAGATGCAGAGGCATGGTTGAATTTGATTGAGAAATGTTTCAGGGTAATAAGGTGCCCTGAGGATCGAGAGGTGGAGTTAGCTGCTTTCCTGCTCCAGAAAGGGGCAGAGGACTGGTGGAGACTCTTCGAGGCTCGAAGAGGTGATGGAGGAGTAATGCTTTGGAATGATTTCAGAAAGGCATTCCAGGAGAAGTATTATCCTAGATCTTACTGTGATGCTAAGAGGAGTGAGTTTCTGAGGCTTAAGCAGGGTTCTATGACTGTTGCTGAGTATGAAAAGAAGTTTACTGAACTTGCTAGGTATGCATTGAACCTCGTAGTTGACGAGGTAGATCGTTGCAAGAAGTTTGAGGAAGGTTTAAGAGTAGAGATCATAACACCTGTAACGGCTAGTGCTGACTGGGCTGATTTTACTAAATTAGTGGAGACAGTTATAAGAGTTGAAAAGAGTTTAGCTGAAAAATAGACAGAGGCAGGTGATATAGAGCCGGAGGTCGAGATAGAATAATACCAGGAGATTTACGCCTGGGGTTCAGCAGAGAGGTAGATTTAAACCTCGATGTAGTGGGCCATCTGGGTCCAGAGCTGGTTCAGCAGGTGGATCTCAGAGGCGAGATCAGAGATGAGCTACTAGTGAGGTAGGGGTTGGTTCACAGGTGGGACAACCTAGAGAATCCACGGCTAGTTTAGTGAGGAAACCTCTGTGTCCTATATGTGATAAGTATCATTTTGGGCAGTGTTTCAGTGGCTCGAATGTTTGTTATAATTGTGGCCAAGCTGGGCATTTTAAGAAAGATTGTGCTCAAACTGCAACAGATATAAGAGACCAAAGAGCTGTGTCTCAGATAGTGAGTCAAGTGAAATCAGGAGGGAATACAGGTGAAGGCACTAGTGGTGTCAAGGCCAAGGGGCCAGGTAGGTCTAAACGGCAAGGCAAAGTTTATACTATGACACAGAAGGAAGCCGAGGATACACCTGACGTAATCACGGGTACGATGTTAATTTGTGATTTACCTATGTATGTATTGATTGATTCTGGTGCTACTCATTCCTTTGTATTTGTTAGACATGCTGAAATGCTAAGTATGGACTTAGAATCTTTGAATGATGATTTAGTAATTAGTACACCTATGGGGATGTGTTAATAGCTGATTCTGTATGTAAGAATTGTGAAGTAAAGTTGCATAATGTATGTATGTTGATTGATTTAATCCTGTTAGAAGTTCATGAGTTTGATGTGATCATGGGTGTGGATTTCCTGACTAAATATCATGCCACTGTGGACTGTTATAATAAGGAGGTAGTCTTTAGAAAATCAAGAACAGCTGAGGTTACGTTTAAAGGTGATAGAAAAGCTGTGTCCACACGCTTAATATCATCCATTAAGGCTAGGAAGTTGTTGACTAGAGGTTGTACAACATATCTGGCTTATGTAATTGATACTCAGGTTAAGAAGAAAGGACCTAAGGATGTTCTGGTGATGCGAGAATTCTTGGGTGTGTTTCCAAAGGAACTATCAGGACTGCCATCTGATAGAGAAATTGAGTTTACGATAGATTTGGTTTTAAGAACAGCTCCTATTTCTCAGGCACCCTATCGTATGGCACCAAATGAGTTGAAGGAACTAAAGATACAGCTATAGGAACTGGTAGATAAGGGCTATATTCGACCCAGTGTTTCTCTTTAAGGAAAGAGTTTGAAGTTTATTATGATGCTTCACATCAAGGGTTAGGATGTGTGTTGATGTAGGATCGTAGGGTAATAGCTTATGCTTCGAGGCAGTTAAAGAAACATGAGCATAACTATCCTACACATGACCTTGAGTTAGCTACAGTTGTTCTAGCCTTGAAGATTTGGAGACATTATTTGTTTGGAGAGAAATGTCATATTTATACTGATCATAAAAGTTTGAAATATATCTTTGATCAGAAAGAGTTAAACTTAAGGCAGAGAAGATGGATGGAGTTGATTAAAGATGTATAGAACACTGAAAGAACATTATTGGTGGTCAGGTATGAAACGTGAAATTGCTGATTATGTAGATAGATGTTTGATTTGTCAGCAGGTTAAGCCTGAACGTCAAAGACCAGGAGGACTGTTGAATCCACTACCTATACCTGAATGGAAATGGGAGCATGTGACGATGGATTTCTTATTTGGCTTGCCCCGAACTCCCAGTGGTTATGATGGCATTTGGGTAATATTGGATAGACTCACACAGACAGCACGATTCTTACCAGTCAAGGTAACTTTTGCTCTTGATAAGTTAGCTAAGTTGTATGTTGACAAGATTGTGGGTCAATATGGTGCACCTGTATCTATAATTTCAGTCAGAGATCCCAGGTTTACTTCTAAGTTCTGGCCAAGTTTACAGGAAGCTTTAGGTACTAAGTTACGTTTTAGTACAACTTTTCATCCATAGACAGATGGACAGTCAGAACGTACTATCCAGACACTGAAAGATATGTTAAGAGCTTGTACTCTGCCGTTTAAAGCTAGCTGGGAGAGGGTGTGACAAGTTGGTATCAGAGCATAAGTTCATGGGAATTCTAGGTTTAAAACATAGGGACCAAGAAGGTATTTTATTCCTTTGGAGACGATGAATTTTGCCTTTTGTTAATGGGTTTGCCTGTAATTTTGTATTTCTTAAAACATGAATTTTATATATTATTTTAAACATCATTTCGTGAACTTAAATGGTTCACAGACCAAATCTCTTATATGTCACTTTTTATATTTGCATTATTACCTTAATTTGTTGTTACAATATGTTTCATTATTTGTTCATATTTTGATAATTCAGCTTTCTCCTTTAAATGTGGTGTTCTAGGTTCGTGGTCTCCAATCAAATAAGTTAGAGCTTCGATTTAGACCTGAAGATCCATATTCACATCCAACATATGGGGAGCTTCGCCCATGCAGTTGTTTTCTTTTGAAAATATGTGCGTATTTGTAAATTCTTTTTCAATATTTGAAGCATATGAAATTACTAACTCAAGAATTGATATGATGAAAGGTCATTCAAAAAGTGATACTATTGAGGGAATCATGAAAGTTGAAAAAGAAGTACCTAGAGAAGATGAAGTAAACCTTGATTTTGAGATGGTTGCTCGTGTTCCTGAAGCATATCATTTTGAGGGTTTGATGGATACTTATTCTCTTGGACTAAGTTTTCCGATTTATGCTATTCATATTTGGATGCCTATAAGTTCTCTTTTCTAAATTTTATTTCAACATATCTTAAGGCATGGTTGACTACCAACATGTCGTTGCTATTCATGCGGATGCTACCCGGCGGAAGAAGGGGAATTGGTCAGAAATGCACGAGCCATGTTTAGGTGTTATTTTTGTGTTTAATGCCTATATTATTATACATAGAGTTACATATGGTTGTTAGAATTGTGTCTTAAATTTATTAAATGAGTAAATTGTACATGTAGTTTATGCAGGTAAGGGTAACGCCGTTGATGTGGACAAGGAGGATACTATGATTTTAGTTCCTCCATTATTTGCGATTAAGGATGTGCCTGAAAATTTAGTGTGA

mRNA sequence

ATGGGGAAGCTGAAAGACAACACTATCTCAGGGCTCTTACCTACTGCCCAGATTTTTGCAGTTCACTATCCTGGTTATCCTTTGTCCAAGCGTCGGGCAATTGAAAGTCTAGGAGGAACACAATCAATTCTCAAGGTTCGTGGTCTCCAATCAAATAAGTTAGAGCTTCGATTTAGACCTGAAGATCCATATTCACATCCAACATATGGGGAGCTTCGCCCATGCAGTTGTTTTCTTTTGAAAATATGCATGGTTGACTACCAACATGTCGTTGCTATTCATGCGGATGCTACCCGGCGGAAGAAGGGGAATTGGTCAGAAATGCACGAGCCATGTTTAGTTTATGCAGGTAAGGGTAACGCCGTTGATGTGGACAAGGAGGATACTATGATTTTAGTTCCTCCATTATTTGCGATTAAGGATGTGCCTGAAAATTTAGTGTGA

Coding sequence (CDS)

ATGGGGAAGCTGAAAGACAACACTATCTCAGGGCTCTTACCTACTGCCCAGATTTTTGCAGTTCACTATCCTGGTTATCCTTTGTCCAAGCGTCGGGCAATTGAAAGTCTAGGAGGAACACAATCAATTCTCAAGGTTCGTGGTCTCCAATCAAATAAGTTAGAGCTTCGATTTAGACCTGAAGATCCATATTCACATCCAACATATGGGGAGCTTCGCCCATGCAGTTGTTTTCTTTTGAAAATATGCATGGTTGACTACCAACATGTCGTTGCTATTCATGCGGATGCTACCCGGCGGAAGAAGGGGAATTGGTCAGAAATGCACGAGCCATGTTTAGTTTATGCAGGTAAGGGTAACGCCGTTGATGTGGACAAGGAGGATACTATGATTTTAGTTCCTCCATTATTTGCGATTAAGGATGTGCCTGAAAATTTAGTGTGA

Protein sequence

MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCSCFLLKICMVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAIKDVPENLV
Homology
[Close]
BLAST of HG10019076 vs. NCBI nr
Match: XP_038888320.1 (general transcription factor 3C polypeptide 5-like [Benincasa hispida] >XP_038888321.1 general transcription factor 3C polypeptide 5-like [Benincasa hispida])

HSP 1 Score: 264.6 bits (675), Expect = 5.0e-67
Identity = 133/188 (70.74%), Postives = 141/188 (75.00%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKLKDN+ISG LPTAQ FAVHYPGYPLSKRRAIESLGGTQSILKVR +QS+KLELRFRP
Sbjct: 1   MGKLKDNSISGHLPTAQNFAVHYPGYPLSKRRAIESLGGTQSILKVRDIQSSKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPTYGELRPCSCFLLKIC                                     
Sbjct: 61  EDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEANLDFEMVARVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAI 148
               M+DYQHV+A+HADATRRKKGNW+EMHEPCL   GKGNAVDVDKEDTMILVPPLF+I
Sbjct: 121 HFEGMIDYQHVIAVHADATRRKKGNWAEMHEPCL---GKGNAVDVDKEDTMILVPPLFSI 180

[Close]
BLAST of HG10019076 vs. NCBI nr
Match: XP_022927790.1 (general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_022927791.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_022927792.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_022927793.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 127/188 (67.55%), Postives = 137/188 (72.87%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKLKDNTISG LPTAQ+FAVHYPGYP SKRRA+E+LGG QSILKVR LQSNKLELRFRP
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILKVRDLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPT+GELRPCSCFLLKIC                                     
Sbjct: 61  EDPYSHPTHGELRPCSCFLLKICHPKSDSTEGIKKVEKEVPREDEINLDFEMVACVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAI 148
               M DYQHVVA HADAT+RKKG+W+EMHEPCL   GK NA+DVDKEDTMILVPPLFA+
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMHEPCL---GKVNAIDVDKEDTMILVPPLFAL 180

[Close]
BLAST of HG10019076 vs. NCBI nr
Match: KAG6588837.1 (General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 127/188 (67.55%), Postives = 137/188 (72.87%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKLKDNTISG LPTAQ+FAVHYPGYP SKRRA+E+LGG QSILKVR LQSNKLELRFRP
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILKVRDLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPT+GELRPCSCFLLKIC                                     
Sbjct: 61  EDPYSHPTHGELRPCSCFLLKICHPKSESTEGIKKVEKEVPREDEINLDFEMVACVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAI 148
               M DYQHVVA HADAT+RKKG+W+EMHEPCL   GK NA+DVDKEDTMILVPPLFA+
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMHEPCL---GKVNAIDVDKEDTMILVPPLFAL 180

[Close]
BLAST of HG10019076 vs. NCBI nr
Match: XP_022157190.1 (general transcription factor 3C polypeptide 5-like isoform X3 [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 127/189 (67.20%), Postives = 135/189 (71.43%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRP
Sbjct: 1   MGKLRDNTISGLLPTNHAFAVHYPGYPLSKRRAIETLGGTQSILKVHGLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPTYGELRPC CFLLKIC                                     
Sbjct: 61  EDPYSHPTYGELRPCCCFLLKICHSKGDAIEGIMKDEREVPIEDEVNLKFEMVAHVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFA 148
               M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMREPCLVIYTGKVNVIDVDKEDIMILVPPLFA 180

[Close]
BLAST of HG10019076 vs. NCBI nr
Match: XP_022157187.1 (general transcription factor 3C polypeptide 5-like isoform X1 [Momordica charantia] >XP_022157188.1 general transcription factor 3C polypeptide 5-like isoform X1 [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 127/189 (67.20%), Postives = 135/189 (71.43%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRP
Sbjct: 1   MGKLRDNTISGLLPTNHAFAVHYPGYPLSKRRAIETLGGTQSILKVHGLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPTYGELRPC CFLLKIC                                     
Sbjct: 61  EDPYSHPTYGELRPCCCFLLKICHSKGDAIEGIMKDEREVPIEDEVNLKFEMVAHVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFA 148
               M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMREPCLVIYTGKVNVIDVDKEDIMILVPPLFA 180

[Close]
BLAST of HG10019076 vs. ExPASy Swiss-Prot
Match: Q8R2T8 (General transcription factor 3C polypeptide 5 OS=Mus musculus OX=10090 GN=Gtf3c5 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 23/66 (34.85%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 17 QIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCS 76
          ++  V YPG   ++ + +++LGG +S+ ++    + +LEL FRP+DPY HP        S
Sbjct: 23 RLVCVEYPGVVRNEAKMLQTLGGEESVSRIYTDPTKRLELYFRPKDPYCHPVCANRFSTS 82

Query: 77 CFLLKI 83
            LL+I
Sbjct: 83 SLLLRI 88

[Close]
BLAST of HG10019076 vs. ExPASy Swiss-Prot
Match: Q54GS8 (General transcription factor 3C polypeptide 5 OS=Dictyostelium discoideum OX=44689 GN=gtf3c5 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-06
Identity = 27/78 (34.62%), Postives = 40/78 (51.28%), Query Frame = 0 

Query: 6   DNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKV-RGLQSNKLELRFRPEDPY 65
           D  I   LPT   + + YP    +  +AIES+GG   I  V +  +   L+L+FRP +P 
Sbjct: 33  DKAIIRPLPTKAYYGLEYPANVQNADKAIESVGGLSKISNVIKSREKEYLQLKFRPNNPT 92

Query: 66  SHPTYGELRPCSCFLLKI 83
             PT+G   P    LL++
Sbjct: 93  CKPTFGTKSPTCHLLLRV 110

[Close]
BLAST of HG10019076 vs. ExPASy Swiss-Prot
Match: Q9Y5Q8 (General transcription factor 3C polypeptide 5 OS=Homo sapiens OX=9606 GN=GTF3C5 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-06
Identity = 27/87 (31.03%), Postives = 41/87 (47.13%), Query Frame = 0 

Query: 17  QIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRPEDPYSHPTYGELRPCS 76
           ++  V YPG      + + +LGG + + ++    + +LEL FRP+DPY HP        S
Sbjct: 23  RMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFSTS 82

Query: 77  CFLLKICMVDYQHVVAIHADATRRKKG 104
             LL+I               TRR+KG
Sbjct: 83  SLLLRI------------RKRTRRQKG 97

[Close]
BLAST of HG10019076 vs. ExPASy TrEMBL
Match: A0A6J1EPX9 (general transcription factor 3C polypeptide 5-like OS=Cucurbita moschata OX=3662 GN=LOC111434581 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.6e-64
Identity = 127/188 (67.55%), Postives = 137/188 (72.87%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKLKDNTISG LPTAQ+FAVHYPGYP SKRRA+E+LGG QSILKVR LQSNKLELRFRP
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILKVRDLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPT+GELRPCSCFLLKIC                                     
Sbjct: 61  EDPYSHPTHGELRPCSCFLLKICHPKSDSTEGIKKVEKEVPREDEINLDFEMVACVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPLFAI 148
               M DYQHVVA HADAT+RKKG+W+EMHEPCL   GK NA+DVDKEDTMILVPPLFA+
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMHEPCL---GKVNAIDVDKEDTMILVPPLFAL 180

[Close]
BLAST of HG10019076 vs. ExPASy TrEMBL
Match: A0A6J1DTW8 (general transcription factor 3C polypeptide 5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023964 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64
Identity = 127/189 (67.20%), Postives = 135/189 (71.43%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRP
Sbjct: 1   MGKLRDNTISGLLPTNHAFAVHYPGYPLSKRRAIETLGGTQSILKVHGLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPTYGELRPC CFLLKIC                                     
Sbjct: 61  EDPYSHPTYGELRPCCCFLLKICHSKGDAIEGIMKDEREVPIEDEVNLKFEMVAHVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFA 148
               M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMREPCLVIYTGKVNVIDVDKEDIMILVPPLFA 180

[Close]
BLAST of HG10019076 vs. ExPASy TrEMBL
Match: A0A6J1DSF0 (general transcription factor 3C polypeptide 5-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111023964 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64
Identity = 127/189 (67.20%), Postives = 135/189 (71.43%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKL+DNTISGLLPT   FAVHYPGYPLSKRRAIE+LGGTQSILKV GLQSNKLELRFRP
Sbjct: 1   MGKLRDNTISGLLPTNHAFAVHYPGYPLSKRRAIETLGGTQSILKVHGLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPYSHPTYGELRPC CFLLKIC                                     
Sbjct: 61  EDPYSHPTYGELRPCCCFLLKICHSKGDAIEGIMKDEREVPIEDEVNLKFEMVAHVPEAY 120

Query: 121 ----MVDYQHVVAIHADATRRKKGNWSEMHEPCLV-YAGKGNAVDVDKEDTMILVPPLFA 148
               M DYQHVVA HADAT+RKKG+W+EM EPCLV Y GK N +DVDKED MILVPPLFA
Sbjct: 121 HFEGMADYQHVVATHADATKRKKGSWTEMREPCLVIYTGKVNVIDVDKEDIMILVPPLFA 180

[Close]
BLAST of HG10019076 vs. ExPASy TrEMBL
Match: A0A1S4E516 (general transcription factor 3C polypeptide 5-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502764 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.6e-63
Identity = 132/188 (70.21%), Postives = 135/188 (71.81%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKLKDNTISG LP AQ FAVHYPGYP SK RAIESLGGTQSILKVRGLQSNKLELRFRP
Sbjct: 1   MGKLKDNTISGFLPAAQNFAVHYPGYPSSKHRAIESLGGTQSILKVRGLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
            DPYSHPTYGELRPCSC LLKIC                                     
Sbjct: 61  ADPYSHPTYGELRPCSCLLLKICHSKCDTNEGIMKVENVPGEDEVNLDFEMVARVPEAYH 120

Query: 121 ---MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKG-NAVDVDKEDTMILVPPLFAI 148
              MVDYQHVVA+HADAT RKKGNW+EMHEP L   GKG NAVDVDKEDTMILVPPLF+I
Sbjct: 121 FEGMVDYQHVVAVHADATWRKKGNWAEMHEPRL---GKGNNAVDVDKEDTMILVPPLFSI 180

[Close]
BLAST of HG10019076 vs. ExPASy TrEMBL
Match: A0A5A7VI24 (General transcription factor 3C polypeptide 5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00610 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.6e-63
Identity = 132/188 (70.21%), Postives = 135/188 (71.81%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MGKLKDNTISG LP AQ FAVHYPGYP SK RAIESLGGTQSILKVRGLQSNKLELRFRP
Sbjct: 1   MGKLKDNTISGFLPAAQNFAVHYPGYPSSKHRAIESLGGTQSILKVRGLQSNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
            DPYSHPTYGELRPCSC LLKIC                                     
Sbjct: 61  ADPYSHPTYGELRPCSCLLLKICHSKCDTNEGIMKVENVPGEDEVNLDFEMVARVPEAYH 120

Query: 121 ---MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKG-NAVDVDKEDTMILVPPLFAI 148
              MVDYQHVVA+HADAT RKKGNW+EMHEP L   GKG NAVDVDKEDTMILVPPLF+I
Sbjct: 121 FEGMVDYQHVVAVHADATWRKKGNWAEMHEPRL---GKGNNAVDVDKEDTMILVPPLFSI 180

[Close]
BLAST of HG10019076 vs. TAIR 10
Match: AT3G49410.1 (Transcription factor IIIC, subunit 5 )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 79/190 (41.58%), Postives = 103/190 (54.21%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MG +++ TISG LP+ + F VH+PGYP S  RAIE+LGG Q I + R   SNKLELRFRP
Sbjct: 1   MGIIEEGTISGTLPSKEAFVVHFPGYPSSISRAIETLGGIQGITQARESISNKLELRFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDPY+HP  GE RPCS FLL+I                                      
Sbjct: 61  EDPYAHPALGEQRPCSGFLLRISKQDIKKPESQSVLDTSRDVCLEEASPVLCADIVARLS 120

Query: 121 -------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVPPL 147
                  M DYQHV+ IHAD  ++KK  W ++ +P     GK + + +  ED M+L+P  
Sbjct: 121 ESFHFDGMADYQHVIPIHADIAQQKKRKWMDV-DP---LTGKSDLMGLADEDVMMLLPQF 180

[Close]
BLAST of HG10019076 vs. TAIR 10
Match: AT5G24450.1 (Transcription factor IIIC, subunit 5 )

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-35
Identity = 81/193 (41.97%), Postives = 101/193 (52.33%), Query Frame = 0 

Query: 1   MGKLKDNTISGLLPTAQIFAVHYPGYPLSKRRAIESLGGTQSILKVRGLQSNKLELRFRP 60
           MG +++ TISG LP+ + F VHYPGYP S  RA+E+LGG Q I   R   SNKLEL FRP
Sbjct: 1   MGIIENGTISGNLPSKEAFVVHYPGYPSSISRAVETLGGIQGITTARESTSNKLELHFRP 60

Query: 61  EDPYSHPTYGELRPCSCFLLKIC------------------------------------- 120
           EDP +HP YGE R C+ FLLKI                                      
Sbjct: 61  EDPSAHPAYGERRHCNGFLLKISKEDVKKDSLPESQPVISTSDACLPEVRPALCADIVAR 120

Query: 121 ---------MVDYQHVVAIHADATRRKKGNWSEMHEPCLVYAGKGNAVDVDKEDTMILVP 148
                    MVDYQHV+ IHAD  ++KK  W E+       AGK + +D+  ED M+L+P
Sbjct: 121 VSESYCFDGMVDYQHVIPIHADIAQQKKRKWMEVKS----LAGKNDLMDMADEDVMMLLP 180

The following BLAST results are available for this feature:
BLAST of HG10019076 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888320.15.0e-6770.74general transcription factor 3C polypeptide 5-like [Benincasa hispida] >XP_03888... [more]
XP_022927790.11.2e-6367.55general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_0229... [more]
KAG6588837.11.2e-6367.55General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma s... [more]
XP_022157190.12.0e-6367.20general transcription factor 3C polypeptide 5-like isoform X3 [Momordica charant... [more]
XP_022157187.12.0e-6367.20general transcription factor 3C polypeptide 5-like isoform X1 [Momordica charant... [more]
BLAST of HG10019076 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8R2T81.4e-0634.85General transcription factor 3C polypeptide 5 OS=Mus musculus OX=10090 GN=Gtf3c5... [more]
Q54GS82.3e-0634.62General transcription factor 3C polypeptide 5 OS=Dictyostelium discoideum OX=446... [more]
Q9Y5Q88.8e-0631.03General transcription factor 3C polypeptide 5 OS=Homo sapiens OX=9606 GN=GTF3C5 ... [more]
BLAST of HG10019076 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EPX95.6e-6467.55general transcription factor 3C polypeptide 5-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1DTW89.6e-6467.20general transcription factor 3C polypeptide 5-like isoform X1 OS=Momordica chara... [more]
A0A6J1DSF09.6e-6467.20general transcription factor 3C polypeptide 5-like isoform X3 OS=Momordica chara... [more]
A0A1S4E5163.6e-6370.21general transcription factor 3C polypeptide 5-like isoform X1 OS=Cucumis melo OX... [more]
A0A5A7VI243.6e-6370.21General transcription factor 3C polypeptide 5-like isoform X1 OS=Cucumis melo va... [more]
BLAST of HG10019076 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G49410.11.1e-3541.58Transcription factor IIIC, subunit 5 [more]
AT5G24450.11.9e-3541.97Transcription factor IIIC, subunit 5 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041499Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domainPFAMPF17682Tau95_Ncoord: 20..84
e-value: 5.8E-14
score: 52.4
IPR042536TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamilyGENE3D3.30.200.160TFIIIC, subcomplex tauA, subunit Sfc1, barrel domaincoord: 10..100
e-value: 1.4E-20
score: 75.3
IPR040454Transcription factor IIIC subunit Tfc1/Sfc1PANTHERPTHR13230GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5coord: 84..146
IPR040454Transcription factor IIIC subunit Tfc1/Sfc1PANTHERPTHR13230GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5coord: 5..83
NoneNo IPR availablePANTHERPTHR13230:SF5GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 5coord: 5..83
coord: 84..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019076.1HG10019076.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
cellular_component GO:0000127 transcription factor TFIIIC complex