HG10019038 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019038
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CCHC-type domain-containing protein
Location	Chr04: 14640317 .. 14646612 (-)
RNA-Seq Expression	HG10019038
Synteny	HG10019038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGTAATGTTGAAGAGATTGATTGTGACGGCACTAGCAGATGGACGGGCCCTTTTATGCGAATTCGCATTCAAATGGATGTCACATTACCTCTTAGACATGGATGCAAATTAAGAACGAATGAAGGAAAAGAAGTATGGTGTCCGATCCAATATGAAAAGCTTCCTGATTTTTGCTTCACATGTGGTAAATTTGGTCATTCTCTTAGAGAATGTCAGCAATCAAGAAGTCTAAATAACAACTGTCACGAATACAGCGAATGGTTAAAGGCTACGCGGGTGAAGAAAGAAGGGAGATTTTTGGGCGAAGTTGGGGGAGAGAAGCGGCAAGTCGGGGAAGAAATGTGAGTGAACAAAGTGGCAGAGGAGGGCAATGGGTGGCCTCTAGGCAGAGTGATGGAGTGGTATGGTAGAGGAAATCGCTGGAATCCTTGACCGGCGGTTAGATGGGAGAGAAGGAGACACGAGGAGCCGCTATAGATGAGTCATTCATGGAAAGGAGAAAAGAAAACATTGATTGGGGTGGGCATTAAAAGTGGAGGAGACGTTACATCTGTAAATGAGGGAGATATGATTAGGGGAAGGAATAATGGCATAAAAGGTGGAGAGAGGGACCCACTGCTGGTTAAGGAGAAGGGGAAAGAAGTGAGGAATGGGATGGGTTTGATTTATGGTGAAATGGGCCAAAAGAGTGGCTCTATGGTGGGAAATTCACTGACCCAATCAGAGGATATGGAGCTGGAAATTGTTCAACAGAATTGGTGAAAAGCAGGACTTTTTGAAAGAGTTCCAAAAAATTTGGGAATTAAAATCAATGATCAACCCCTTGCAAAAGTAGAAGGTGGCAAATGCAAATTATATGAAGATGTGACGGAGTGGGAATTGAGAAAGAAACAAAAAGTTGCAAATGTACAATCCAATGATATATCGACGGAGGCTGTGCCACATCCCTGCCGGTCGCAATGAAACTTTTATGCTGGAACGTCTGGGGAATGGGGAACCCGGGGGCGTTCAGAGACTTAAAAGACGTTATCCGTCGACAATCTCTCCAACTGGTCTTTTTAACAGAAATTAGAGGTGGACCTGAGAGAATGAACTTTATTAGAAATACCTCAAAAATTATGGAGAAAATTCTAGCGGTTCTTTAGCGTTCTTGATATTCCAATAAATCGGATCCAATCTCTACAAATTCTTCAAAGTGGTAGAGACTCGTGCTGATAACGTGTTGTAAAATAAGAACAAAACAAGAACAAAAAGAAGCAAAGTAAAGAGATGAAGGTAGAGAGAAAAATTAAACTCAATTGTGGTGTGCTTACAAAGGCACCACTCTACACTATTTATAGGACATGAATGGTGTATGTTACATTATGTAATTCAATGGAATGTTATAGATTTTTGTAATCTAGGTAAGTTATGGATATCTACAATAAATATTATATTTATAATAGTTTTCAAAAAATAGAAAACATAAAACATAAAACAAATGAATTATCATACGAAGCCGTATTAATTTAAGGGCTCTTTTCAAATATAGAAAAATAAGTCAAACTATTTACAAATATAGAAAATTTTTCTGATAGACCGTGATAGAATTCTATCGATTTCTATCACTTAAGCGATAGAATTTATTTACTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCTATCATTGATAGATAGTAAAAATTTTCTATACTTGTAAATAGTTTGATATTTTTTCTATTTATAGTAATTTCCCTTAATTTAAACTATCTAACCCAATAATTAATAATATATTTACTTAATTAATTACCATTATTATGAAATTATGTTTAATAATGATAATTAAGAGAGGTTTTTAAAAATAGAAAAATAAAGAAAAATATTTATACAAATAACAAATTTTTTAGATAGTTGTTATAGACGCTAATAGAAGTTTATCAAAATCTATTGATAAAAATGATAAAAATCTAAAACTGATAGAAGTTTATCAATATATATTTTTTTTTTTTACTATTTTCTATAAATAGTTTGACATAATTTCTATCGGTAAAAATTTCTCTATAATTAATTGCTCATATTAATTATAATCAAATAAATTGTAGTTATAAATTTGTAGTAAAATTATATTTATTTTTAAATTAACTTTAGTTGTTTACGATTATATAAAATTTCACAAATTAATTTCAAGAAATATATAATTATTAATTAATAATACATTACCTATTTTAAATTATAATAACATTTTTATTATGTACAATCAAAGTAATATTTAATTCTAGCAAATCTTATTTCCATTCTTAATTCCAACCCTTAATGTAAGCCAAGGGAATGTCTTTCAAATGAGTAAAATCAGCGCCAAAACCAAAGATACTGGTCTGAAACAATTATTAACTAACAATCCCCAAAAAGTCTTAAGAAATATAGCAGTTCACAGTGGGGGGAGATGGAGGCAACAAACCTAAGAATTCCAAAGAAAAGAATTAAAATATCCACAAAGCACAGTTAGTTCTACAAAGTAAGAACTAAAAGCATTGAGCAGATGCTCAATGTTCAAGGTGGAAAACGTATTCGGTCAAGCGCTGCAGTTTACTCGAATCTAACTTCTGCTCTGTCACAATTTCTTGTTTCTTCACAGTGAACATTTGAGAAGCAACATCAACAATCCATCCTTGCTGTGTTACATCTGCAAATACAAAACACCTTCTATTGTTTGCAAACTAGCCATAAAGGAATGAGGAAAACACCTAACAAAGGTCCAAATATCATAGCTTTTTTTCTTTGATCGGAAACAAAAATTTCATTCATATAATGAAATGAGAATTATTGCTTCAAAATACAAGATCTCCAAATAAAAGACAAATAATGGAGACAAACATAGGCCAAAAAGAAGAAAGAAGAAACCTTCAACTAAGAAGCACAAAACTTAGATAGAGAGCTCCATAAGAAACTAAGAGACTAACTGAACCAAAACAAACCAGTCTAAACAAAGAACACATTAAACCAAAAAACTAATATTGCATCACAAGAGACCAAACAACTCTGAAAAAGCCCTCAAGAGAGGGAAAGAGACCCAAGCCAAATGGGACTAGAAAATCTAACAGAAAGGGAAAAAACACCTCGAACAATGCATAGTATAGCAATTAATTATCTCAAACGCACTCATTTTGCTAGAAAAAAAACAGACCATGTAAGATAGAGATAATTTAAGCAATGAAGGCCAGAAAATCCCGTGGATGATACTGTCCAGAACTTTCAACATTAATCTACTTTTAAGTTAGTTAATTTACAGGTTGTTAGAATGGGAAGTAAAATCCCTTCTGAGAAATCAAAGTCATTTGCATCACCAACTTTACGGAGGAATATTTAGTCAGCTATACGAATGTGAAGGGTATGATAAGTGATGCAAGTCAGGTCTTTGGCGAGTGCTAGTAAGGGTTGGTGACGGGAGATAATGTTTAGTGTTCCATCAAAGTGGCCTACCAAGTTGACCTACTCCAAATAAATGGAAGCAACAGATTATAATAAAACACAAGCGTGACTAAATCACTAGACTAAGTCAATTAATGTTCGGTTTGTGCGATTTTAGCTCTAGTTTGGTCAGTGGCCACAAACCAATGATGAAGGGCAATGGAATAGAAGGATGTGTTGCATTTTTATTGCTTGGACAGCAGTGACTATAAATGTTAGGCTGAATGCTGAATTTCGTTAGCTGGCATTAAGGCCACCTTTGGTAGTACTACAAAGAGTCCGAAGGAGAACTTCGATCTTCTTAGGGTAGTTATTTTTCCAATAGCAAAGTAGGTCCTCTGAAAAATTTCCCGCATCTTTGGTCAGAGTGTGCATAGCCTTTTTGCAAGAGTACACTCCATTATTACTTAGACGTCTTCTCCCACTTCAGAATGCAAAGGGTGGGTATTCCCTAACATGTTTATGAGACTAACCCAAACTTCAACTCCTTGATCATTAAAGCTCCTACAAAAGCCCATCCAGAGCATTATGTCATCGGTGAACGCATTCATGATACCCTTCTTAAAAAAATTCACGAACTATGCACTAAGTCATTTTTTAGAATGTTCCAAGAATTTTTAAATAAGTCAACAGAAACAATAATGGGTGATGCTTTGCAATTTGCAATTACCAAGTTAGTGATGGTGGAAGTCATGGGCTAATTAGATCCTCATAACCAAAAATCAAATAAAACCATGGATGAATTAGATCCCCATGTCTTTAATCCAAAAAGAAGAAATTCATATCATAACAAAGGAAAAAGATTTTATGAAGAATGGGGGCTTTATTTAATTTTTAATTTTTTAAAAAAAAAAGACGAAAAAGAAAAAACCATAGAGTTCTCTTCTTACCACTCCAACTCTCTTTCACTACGTAACCTTTTTCTTGAAGTCTTCTTTTCTTAACTTCTTTTCCCCCTTTTCTTTTCTTTTAAGAAAAAAGAAAACAAATGGAAAATGAATCTTAGCTCGCACTGGTCATCTCTAGATAGGGATGAGCAGTCTCCCAGCAATGACTCATCCGACTTTGCTTACGATGGAGATGGATCTACCAACACTTGGCCTTATCATCTTCGATGATTGAAGCTTTACTTGAGCAATTACGGTACGAATGGATGTGTCTTTGAGAGTTCTTGATTCGAATGATAGCATTGACAATCTCTCTTCCCCGATGAAGTTGCTTTTTACTTACTTATGTTTTCCTTTGGTGTCCGACTACCCTTACGATTTTTCCTCTGAAGTTTCTTACCATTGCTTCAATTAGCAACCCCCGCTCAGATTTTCTCTAACAGTTGGGGTCATTTTATAGGCTGCTACATCCTTTGGTCTAGATATGGGGACGACTCCCTCTATCTGCTTTTACTTTTATGTCATTCCACACCATAAGCCATAATCCCTCATTCGATAGATACTTTTATTATCGGAGCTCAAAAGAATTATAGTTAACGAACCAACCTCTATAAAATAATGAAAAAATGGTTGGTTCTAAGTTGGCGGGAACTGGCTTGACCATGGTCCTAGCGGCTCTCATTATGCAGTTCCAACGGAATTCAGAGAGTACGGTAAGCTCTCCATCCCCTCCCACTTGGAACCGTTTCTTTTCTCTCATGACTAACCAAATTCTGATGTTTTTTTATTTATTTCAGTTTCACAGCGATATCGATCCTCAGCTGCAATCCCCTCTTTCCTTCGACTTGTTTGTGACCTCCTCGATGGTCCTTGAGGTCCCCACTACAGACCACCTTTGGTCGGCCAAAGCAACCTCGTCTCTGTCAGCTTAACCCCACTAGCTCTCTATCCAGGTTTGTTAATCTCCGAGTGCCTTTTAAATTTCACGGCCTCAACCATGCATGGGCTCGGCCTCAGCCAACCTTCCCTATTTCAGGCATGGCTCCCCATCGCATAGTAGAGAGGTGAATCGTCGGATGGTGGATCTCAACATGAAACCGACCTTACCGAGGACGATCATCAACCCTTCCCGCTTTCCTCCACCTCGACCCATGCCACCGAACCGTCAATCTCCCAGTTTCTAGAGCACTTCCAATCCCGAGGCAAGTGGTTCTTCATCTAGGACAGAAGCATTTATCCTCCCCGAGGATTATTCCAAAATCGGTGGCAAAGTTAAACTTCTCACAAAAATTATTGAACTCTGGGAAGGTGTGAAAGATGAACCTATTCTGACCGAATCCAGCAATGACAACCCTAGCGCTGCCATGAGCCATAACATCTACGACCTTCACCAGGTAAGCCCCGAGACCAACTCTTTCCTCACTCATCCATATGCAACCATGATCTCCACGGTCGGCCACGACCATCTTCATTACGTATCTTTCTTTCCTCTATAAAAGATCTTTATACAGATGCATGTCTCCACCATAAGCTTAACTAACTGTATCAACCATCTGATGGCAACCATCATGGGTTGGCCTAATAGTAAAAAAGGAGACAAAGTCTCAATAATTGGCTAAGAGGTCATGGATTCAATCCATGGTGGCCACCTACCTAGGAATTAATTTCCTACGAGTTTCCTTGACACCCAAATGTTGCAGGGTCAAGCGGATTGTCCCGTGAGATTAGTCGAGGTGCGCATAAGCTGGCCCAGATACTCACGGATATAAAAAAAAAAAATCAACCATCTGATGGCCAACTGCAAGGAGTTGACCAAGCCCAACATCAGGTTGCTCGAGCTAACTGCGTTCTGGATGAAACTCGAGGGGATCTGAATTCTATCCGAGCTAACTATGCCCGTACCCAACCCAAGCTTGACAAGGCTGAAATCCTCCTTTCCAATATTGCCTAG

mRNA sequence

ATGATAGGTAATGTTGAAGAGATTGATTGTGACGGCACTAGCAGATGGACGGGCCCTTTTATGCGAATTCGCATTCAAATGGATGTCACATTACCTCTTAGACATGGATGCAAATTAAGAACGAATGAAGGAAAAGAAGTATGGTGTCCGATCCAATATGAAAAGCTTCCTGATTTTTGCTTCACATGTGGTAAATTTGGTCATTCTCTTAGAGAATGTCAGCAATCAAGAAGTCTAAATAACAACTGTCACGAATACAGCGAATGGTTAAAGGCTACGCGGGTGAAGAAAGAAGGGAGATTTTTGGGCGAAGTTGGGGGAGAGAAGCGGCAAGTCGGGGAAGAAATGACAGAAGCATTTATCCTCCCCGAGGATTATTCCAAAATCGGTGGCAAAGTTAAACTTCTCACAAAAATTATTGAACTCTGGGAAGGTGTGAAAGATGAACCTATTCTGACCGAATCCAGCAATGACAACCCTAGCGCTGCCATGAGCCATAACATCTACGACCTTCACCAGGTTGCTCGAGCTAACTGCGTTCTGGATGAAACTCGAGGGGATCTGAATTCTATCCGAGCTAACTATGCCCGTACCCAACCCAAGCTTGACAAGGCTGAAATCCTCCTTTCCAATATTGCCTAG

Coding sequence (CDS)

ATGATAGGTAATGTTGAAGAGATTGATTGTGACGGCACTAGCAGATGGACGGGCCCTTTTATGCGAATTCGCATTCAAATGGATGTCACATTACCTCTTAGACATGGATGCAAATTAAGAACGAATGAAGGAAAAGAAGTATGGTGTCCGATCCAATATGAAAAGCTTCCTGATTTTTGCTTCACATGTGGTAAATTTGGTCATTCTCTTAGAGAATGTCAGCAATCAAGAAGTCTAAATAACAACTGTCACGAATACAGCGAATGGTTAAAGGCTACGCGGGTGAAGAAAGAAGGGAGATTTTTGGGCGAAGTTGGGGGAGAGAAGCGGCAAGTCGGGGAAGAAATGACAGAAGCATTTATCCTCCCCGAGGATTATTCCAAAATCGGTGGCAAAGTTAAACTTCTCACAAAAATTATTGAACTCTGGGAAGGTGTGAAAGATGAACCTATTCTGACCGAATCCAGCAATGACAACCCTAGCGCTGCCATGAGCCATAACATCTACGACCTTCACCAGGTTGCTCGAGCTAACTGCGTTCTGGATGAAACTCGAGGGGATCTGAATTCTATCCGAGCTAACTATGCCCGTACCCAACCCAAGCTTGACAAGGCTGAAATCCTCCTTTCCAATATTGCCTAG

Protein sequence

MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCFTCGKFGHSLRECQQSRSLNNNCHEYSEWLKATRVKKEGRFLGEVGGEKRQVGEEMTEAFILPEDYSKIGGKVKLLTKIIELWEGVKDEPILTESSNDNPSAAMSHNIYDLHQVARANCVLDETRGDLNSIRANYARTQPKLDKAEILLSNIA

Homology

[Close]

BLAST of HG10019038 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-27
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G+VEEI+ DG   W GPF+R+R+++DV+ PLR G KL+ ++GK++WCP++YEKLPDFC+
Sbjct: 149 LGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLKNSDGKDIWCPLRYEKLPDFCY 208

Query: 62  TCGKFGHSLRECQQSRSL--NNNCHEYSEWLKATRVKK 98
            CGK GHS REC+Q   +   N+  +Y +WL+AT +KK
Sbjct: 209 ECGKIGHSGRECEQRSKVVTTNSPEQYGDWLRATLLKK 246

[Close]

BLAST of HG10019038 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 9.0e-17
Identity = 35/74 (47.30%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G VEE+D   +  W  PF+ +R++++V  PLR G K++T++GK++WCP++YE+LPDFC+
Sbjct: 149 LGEVEEVDGMSSYDWVRPFLWVRVKINVLKPLRRGLKVKTSDGKDIWCPLRYERLPDFCY 208

Query: 62  TCGKFGHSLRECQQ 76
            CG  GHS+RE ++
Sbjct: 209 GCGCVGHSIREYEK 222

[Close]

BLAST of HG10019038 vs. NCBI nr
Match: MCH84017.1 (zinc CCHC-type-like protein [Trifolium medium])

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-14
Identity = 52/175 (29.71%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 1   MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFC 60
           ++G  EE+D    +R TG F+RIR+ MD+  PL+ G KL + +GK++W   +YE+LP+FC
Sbjct: 108 ILGMFEEMDMKDCNR-TGKFLRIRVSMDLRKPLKRGSKL-SFQGKDIWVDYKYERLPNFC 167

Query: 61  FTCGKFGHSLRECQQ--------SRSLNNNCHEYSEWLKATRVKKEGRFLGEVGGEKRQV 120
           F CG+ GH +R+C++         R L      +  WL+A+ + K      EV   KR+ 
Sbjct: 168 FACGRIGHQMRDCEEVEDHDTDAYRELEEKDQAFGPWLRASPLPK---VFYEV---KRET 227

Query: 121 GEEMTEAFILPEDYSKIG---GKVKLLTKIIELWEGVKDEPILTESSNDNPSAAM 165
                   + P   +  G   G  K+  + ++  +   +  I  ++++ N + AM
Sbjct: 228 SSGTCSKSLFPSTSNSKGQSSGTAKVNEEEVDQQKATSETEIPPKTNDKNHNEAM 274

[Close]

BLAST of HG10019038 vs. NCBI nr
Match: TXG73180.1 (hypothetical protein EZV62_001759 [Acer yangbiense])

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-14
Identity = 45/132 (34.09%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEV-WCPIQYEKLPDFC 61
           IG V E+  D    W G FMR+++ +D++ PL+   +L+ ++  E+    ++YE+LPDFC
Sbjct: 131 IGAVVELPADSRECW-GRFMRVKVLIDISRPLKRWLRLKLSKSDEIAVVGLKYERLPDFC 190

Query: 62  FTCGKFGHSLRECQQSR----SLNNNCHEYSEWLKATRVKKE-GRFLGEVGGEKRQVGEE 121
           + CG+ GH L+EC        +L+ +  +Y +WLKA  V+KE  RF  ++ G   +  + 
Sbjct: 191 YACGRVGHVLKECTDEEAKQGALDGSPTKYGQWLKAPGVEKEKSRFQAQISGSSSERDKS 250

Query: 122 MTEAFILPEDYS 128
               F L  D S
Sbjct: 251 QERKFDLSSDRS 261

[Close]

BLAST of HG10019038 vs. NCBI nr
Match: XP_023918612.1 (uncharacterized protein LOC112030159 [Quercus suber])

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-14
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           IG V E+DC   +     F+RIR+++ +  P+R G  + + EG  V    QYE+L   CF
Sbjct: 150 IGRVLEVDCKAIAADQACFLRIRVELPLDKPIRRGTPVLSPEGVRVQIAFQYERLVGLCF 209

Query: 62  TCGKFGHSLRECQQSRSLNNNCHEYSEWLKA---TRVKKEGRFLGEVGGEKRQVGEEMTE 121
           +CGK GH  +EC  + S       Y EWLK     + K  GR  G   G++    ++  +
Sbjct: 210 SCGKLGHEAKECLSNVSATTGERLYREWLKVGFRRQTKSGGRNFGAQSGDRDVTSDQAKD 269

Query: 122 AFILPEDYSKIGGKVKLLTKIIELWEGVKDEPILTE-------SSNDNP--SAAMSHNIY 174
               P+ +S        L K+  +    K + ++TE        SN+ P    AM  +I 
Sbjct: 270 PLQTPQQHSTSSSTAN-LAKLETVTNREKWQVLITELVEGSNSMSNEQPPHQCAMQTDIP 329

[Close]

BLAST of HG10019038 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G+VEEI+ DG   W GPF+R+R+++DV+ PLR G KL+ ++GK++WCP++YEKLPDFC+
Sbjct: 149 LGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLKNSDGKDIWCPLRYEKLPDFCY 208

Query: 62  TCGKFGHSLRECQQSRSL--NNNCHEYSEWLKATRVKK 98
            CGK GHS REC+Q   +   N+  +Y +WL+AT +KK
Sbjct: 209 ECGKIGHSGRECEQRSKVVTTNSPEQYGDWLRATLLKK 246

[Close]

BLAST of HG10019038 vs. ExPASy TrEMBL
Match: A0A6J1DVS4 (uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023555 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 35/74 (47.30%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G VEE+D   +  W  PF+ +R++++V  PLR G K++T++GK++WCP++YE+LPDFC+
Sbjct: 149 LGEVEEVDGMSSYDWVRPFLWVRVKINVLKPLRRGLKVKTSDGKDIWCPLRYERLPDFCY 208

Query: 62  TCGKFGHSLRECQQ 76
            CG  GHS+RE ++
Sbjct: 209 GCGCVGHSIREYEK 222

[Close]

BLAST of HG10019038 vs. ExPASy TrEMBL
Match: A0A392M948 (Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0004847 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 52/175 (29.71%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 1   MIGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFC 60
           ++G  EE+D    +R TG F+RIR+ MD+  PL+ G KL + +GK++W   +YE+LP+FC
Sbjct: 108 ILGMFEEMDMKDCNR-TGKFLRIRVSMDLRKPLKRGSKL-SFQGKDIWVDYKYERLPNFC 167

Query: 61  FTCGKFGHSLRECQQ--------SRSLNNNCHEYSEWLKATRVKKEGRFLGEVGGEKRQV 120
           F CG+ GH +R+C++         R L      +  WL+A+ + K      EV   KR+ 
Sbjct: 168 FACGRIGHQMRDCEEVEDHDTDAYRELEEKDQAFGPWLRASPLPK---VFYEV---KRET 227

Query: 121 GEEMTEAFILPEDYSKIG---GKVKLLTKIIELWEGVKDEPILTESSNDNPSAAM 165
                   + P   +  G   G  K+  + ++  +   +  I  ++++ N + AM
Sbjct: 228 SSGTCSKSLFPSTSNSKGQSSGTAKVNEEEVDQQKATSETEIPPKTNDKNHNEAM 274

[Close]

BLAST of HG10019038 vs. ExPASy TrEMBL
Match: A0A2N9G3M9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21832 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G +EEID        G FMR+++++DV++PL    +++  + + +W  ++YEKLP FC+
Sbjct: 32  LGVLEEIDIPEDGITWGEFMRVQVRIDVSMPLLRRQRVKLGKEESIWVTLKYEKLPTFCY 91

Query: 62  TCGKFGHSLREC----QQSRSLNNNCHEYSEWLKAT 94
            CG  GHS REC    Q  +S + N +EY  WL+AT
Sbjct: 92  NCGILGHSERECRLVTQHEKSKDGNHYEYGSWLRAT 127

[Close]

BLAST of HG10019038 vs. ExPASy TrEMBL
Match: A0A2N9E949 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G +EEID        G FMR+++++DV++PL    +++  + + +W  ++YEKLP FC+
Sbjct: 92  LGVLEEIDIPEDGITWGEFMRVQVRIDVSMPLLRRQRVKLGKEESIWVTLKYEKLPTFCY 151

Query: 62  TCGKFGHSLREC----QQSRSLNNNCHEYSEWLKAT 94
            CG  GHS REC    Q  +S + N +EY  WL+AT
Sbjct: 152 NCGILGHSERECRLVTQHEKSKDGNHYEYGSWLRAT 187

[Close]

BLAST of HG10019038 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 20/72 (27.78%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 2   IGNVEEIDCDGTSRWTGPFMRIRIQMDVTLPLRHGCKLRTNEGKEVWCPIQYEKLPDFCF 61
           +G V  +D +  +     F+R++++MD T PLR   ++R    +      +YEKL   C 
Sbjct: 147 LGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIGFEYEKLQRVCT 206

Query: 62  TCGKFGHSLREC 74
            C +  H +  C
Sbjct: 207 NCCRVNHQVSHC 218

[Close]

BLAST of HG10019038 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 43.1 bits (100), Expect = 3.2e-04
Identity = 21/44 (47.73%), Postives = 24/44 (54.55%), Query Frame = 0


Query: 34  RHGCKLRTNEGKEV-WCPIQYEKLPDFCFTCGKFGHSLRECQQS 77
           R G  L TN G++V     QYEKL +FC TCG   H   EC  S
Sbjct: 130 RMGLFLETNLGRDVSVLKFQYEKLKNFCTTCGMLSHDASECPTS 173

The following BLAST results are available for this feature:

BLAST of HG10019038 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149484.1	3.3e-27	53.06	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
XP_022156711.1	9.0e-17	47.30	uncharacterized protein LOC111023555 [Momordica charantia]	[more]
MCH84017.1	3.2e-14	29.71	zinc CCHC-type-like protein [Trifolium medium]	[more]
TXG73180.1	4.2e-14	34.09	hypothetical protein EZV62_001759 [Acer yangbiense]	[more]
XP_023918612.1	9.3e-14	29.35	uncharacterized protein LOC112030159 [Quercus suber]	[more]

BLAST of HG10019038 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D765	1.6e-27	53.06	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DVS4	4.4e-17	47.30	uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A392M948	1.6e-14	29.71	Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_000...	[more]
A0A2N9G3M9	1.6e-14	39.58	CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2183...	[more]
A0A2N9E949	1.6e-14	39.58	CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389...	[more]

BLAST of HG10019038 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36228.1	5.0e-05	27.78	nucleic acid binding;zinc ion binding	[more]
AT3G42140.1	3.2e-04	47.73	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 59..75 e-value: 0.0084 score: 24.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 60..75 score: 9.603271
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 27..74 e-value: 4.2E-15 score: 55.2
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 8..98
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 8..98
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 57..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019038.1	HG10019038.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding