HG10019036 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019036
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Reverse transcriptase
Location	Chr04: 14627630 .. 14628097 (-)
RNA-Seq Expression	HG10019036
Synteny	HG10019036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTCGGCATGGGTGGTGGGAGGTGATTTGAATGAAATTTTATTTAGTAAAGAGAAGCAGGGCGGACCAAGGCGAGAGGAAGGTTTAATGTCGAATTTCCAAACAGCCTTGGATGATTGCGAGTTGAAAGATCTTGGTTATTCAGGCAATATGTTTACGTGGTGCAATAGAAGGGACCAAAATTTACAGGTTAGTCTCTGCCTTGATCGTTTTCTTGCTAATCCTGAATTTATGGCTCTGTTCCTAGATCTTATAGTTAATCACCAAGGTTGGTCAAAATCTGATCATCGTCCCATAGAGCTGACTTTAAGAATTGTTGGAGATCCTTTGTTCCAAAGGTTAGGCAGGAGGCCTTTTCGTTTCAATGTTTTCTGGTCTTCTTATGAGAATTATGAAAAAATTGTGCAGGAATCGGTTGGGCAGGAGGAGGCGCGAAACCATTTAATTTGGGACACAATTTAA

mRNA sequence

ATGGATAATTCGGCATGGGTGGTGGGAGGTGATTTGAATGAAATTTTATTTAGTAAAGAGAAGCAGGGCGGACCAAGGCGAGAGGAAGGTTTAATGTCGAATTTCCAAACAGCCTTGGATGATTGCGAGTTGAAAGATCTTGGTTATTCAGGCAATATGTTTACGTGGTGCAATAGAAGGGACCAAAATTTACAGGTTAGTCTCTGCCTTGATCGTTTTCTTGCTAATCCTGAATTTATGGCTCTGTTCCTAGATCTTATAGTTAATCACCAAGGTTGGTCAAAATCTGATCATCGTCCCATAGAGCTGACTTTAAGAATTGTTGGAGATCCTTTGTTCCAAAGGTTAGGCAGGAGGCCTTTTCGTTTCAATGTTTTCTGGTCTTCTTATGAGAATTATGAAAAAATTGTGCAGGAATCGGTTGGGCAGGAGGAGGCGCGAAACCATTTAATTTGGGACACAATTTAA

Coding sequence (CDS)

ATGGATAATTCGGCATGGGTGGTGGGAGGTGATTTGAATGAAATTTTATTTAGTAAAGAGAAGCAGGGCGGACCAAGGCGAGAGGAAGGTTTAATGTCGAATTTCCAAACAGCCTTGGATGATTGCGAGTTGAAAGATCTTGGTTATTCAGGCAATATGTTTACGTGGTGCAATAGAAGGGACCAAAATTTACAGGTTAGTCTCTGCCTTGATCGTTTTCTTGCTAATCCTGAATTTATGGCTCTGTTCCTAGATCTTATAGTTAATCACCAAGGTTGGTCAAAATCTGATCATCGTCCCATAGAGCTGACTTTAAGAATTGTTGGAGATCCTTTGTTCCAAAGGTTAGGCAGGAGGCCTTTTCGTTTCAATGTTTTCTGGTCTTCTTATGAGAATTATGAAAAAATTGTGCAGGAATCGGTTGGGCAGGAGGAGGCGCGAAACCATTTAATTTGGGACACAATTTAA

Protein sequence

MDNSAWVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQNLQVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFNVFWSSYENYEKIVQESVGQEEARNHLIWDTI

Homology

[Close]

BLAST of HG10019036 vs. NCBI nr
Match: XP_041011336.1 (uncharacterized protein LOC121255118 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-22
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 3   NSAWVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQ 62
           +  W++ GD NE+L ++EK GG  R +  M +F+  +D+CEL DLG+ G  FTWCN R+ 
Sbjct: 88  DQGWLLMGDFNEVLSNQEKSGGRDRSDMQMQDFRVVVDECELLDLGFQGTPFTWCNNRET 147

Query: 63  NLQVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFR 122
           +  +S  LDR LAN ++ ALF  + V H   + SDH PI+L L+      F R GR+PF 
Sbjct: 148 DHSISERLDRCLANLKWKALFPMVKVIHGNAAYSDHIPIKLQLQ---SNEFLRKGRKPFH 207

Query: 123 FNVFWSSYENYEKIVQ 139
           F   W   +N ++I++
Sbjct: 208 FEAMWVEDKNCQEIIK 220

[Close]

BLAST of HG10019036 vs. NCBI nr
Match: XP_012831565.1 (PREDICTED: uncharacterized protein LOC105952547 [Erythranthe guttata])

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-22
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 6   WVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQNLQ 65
           W+VGGD NEIL + EK GGP RE   M  F+ ALDDC L ++G+ G  FTW N R+    
Sbjct: 132 WIVGGDFNEILHASEKMGGPAREPHSMEIFREALDDCGLSNIGWEGKQFTWTNNREHPHT 191

Query: 66  VSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFNV 125
           V   LDR   N  +  LF   +V H   + SDH PI L  + + +P  +   +RPFRF  
Sbjct: 192 VRSRLDRVCVNGSWAGLFPHAVVRHLDHTGSDHSPILLIPQGM-EPRTRPGRKRPFRFEA 251

Query: 126 FWSSYENYEKIVQES 141
            W+S  + E+IVQ +
Sbjct: 252 MWASRSDCEEIVQRA 265

[Close]

BLAST of HG10019036 vs. NCBI nr
Match: XP_012857002.1 (PREDICTED: uncharacterized protein LOC105976270 [Erythranthe guttata])

HSP 1 Score: 114.4 bits (285), Expect = 8.9e-22
Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 3   NSAWVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQ 62
           N  WVVGGD NEIL + EK+GG  R    +  F+ ALDDC L DL + G  FTW N RD 
Sbjct: 129 NLPWVVGGDYNEILSNNEKEGGLSRLPAQIEAFREALDDCGLTDLEFEGPRFTWSNNRDH 188

Query: 63  NLQVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPL---FQRLGRR 122
              V   LDR  A+ +++  F   +V+H  +S SDH P++L L    DP     +R  +R
Sbjct: 189 PYTVRCRLDRVCASADWLLKFPRALVHHMAYSGSDHVPLQLVL----DPAQADSERRKKR 248

Query: 123 PFRFNVFWSSYENYEKIVQES 141
           PFRF   W   ++ E+IVQ++
Sbjct: 249 PFRFEAIWLRRDDCEEIVQQN 265

[Close]

BLAST of HG10019036 vs. NCBI nr
Match: XP_018859783.1 (uncharacterized protein LOC109021580 [Juglans regia] >KAF5468190.1 hypothetical protein F2P56_012365 [Juglans regia])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 6   WVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYS-GNMFTWCNRRDQNL 65
           W++ GD NEIL   EK+GG RR EGLM +F+ AL DC L+DLG+S G  FTWCN R+   
Sbjct: 91  WLLMGDFNEILEPNEKRGGNRRSEGLMEHFRAALIDCNLQDLGFSRGPYFTWCNGREGEG 150

Query: 66  QVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFN 125
            +   LDR LA+P+++  F +  V+H   S SDH PI L     G   + R  ++ FRF 
Sbjct: 151 CIWERLDRCLASPDWVEAFPNFQVSHGSVSYSDHLPIWLNTE--GVSQYDR-RKKMFRFE 210

Query: 126 VFWSSYENYEKIVQESVGQEEARNHLI 152
             W  +E  E I+++    EE R +++
Sbjct: 211 SMWVGHEECEAIIKDVWQNEEGRGNMV 234

[Close]

BLAST of HG10019036 vs. NCBI nr
Match: KAA3467625.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 6   WVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQNLQ 65
           W+V GD NEILF  EK+GG  R++G M  F+  L++C+L D+GYSG  FTW         
Sbjct: 103 WLVAGDFNEILFGNEKKGGGVRDQGRMDAFRDTLEECQLIDIGYSGTWFTWERGNLPETN 162

Query: 66  VSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFNV 125
           +   LDR +AN E+++LF    V H  +S SDH P    L I  D L Q  GR+ F F  
Sbjct: 163 IRERLDRGVANEEWISLFPMGHVQHLPYSMSDHFP----LLICTDHLIQNFGRKKFHFES 222

Query: 126 FWSSYENYEKIVQES 141
           +W+  E+ EK+++E+
Sbjct: 223 WWTLEESSEKVIKEA 233

[Close]

BLAST of HG10019036 vs. ExPASy TrEMBL
Match: A0A2I4HUH1 (uncharacterized protein LOC109021580 OS=Juglans regia OX=51240 GN=LOC109021580 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.3e-22
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 6   WVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYS-GNMFTWCNRRDQNL 65
           W++ GD NEIL   EK+GG RR EGLM +F+ AL DC L+DLG+S G  FTWCN R+   
Sbjct: 91  WLLMGDFNEILEPNEKRGGNRRSEGLMEHFRAALIDCNLQDLGFSRGPYFTWCNGREGEG 150

Query: 66  QVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFN 125
            +   LDR LA+P+++  F +  V+H   S SDH PI L     G   + R  ++ FRF 
Sbjct: 151 CIWERLDRCLASPDWVEAFPNFQVSHGSVSYSDHLPIWLNTE--GVSQYDR-RKKMFRFE 210

Query: 126 VFWSSYENYEKIVQESVGQEEARNHLI 152
             W  +E  E I+++    EE R +++
Sbjct: 211 SMWVGHEECEAIIKDVWQNEEGRGNMV 234

[Close]

BLAST of HG10019036 vs. ExPASy TrEMBL
Match: A0A5B6VEN5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_002620 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 6   WVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQNLQ 65
           W+V GD NEILF  EK+GG  R++G M  F+  L++C+L D+GYSG  FTW         
Sbjct: 103 WLVAGDFNEILFGNEKKGGGVRDQGRMDAFRDTLEECQLIDIGYSGTWFTWERGNLPETN 162

Query: 66  VSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFNV 125
           +   LDR +AN E+++LF    V H  +S SDH P    L I  D L Q  GR+ F F  
Sbjct: 163 IRERLDRGVANEEWISLFPMGHVQHLPYSMSDHFP----LLICTDHLIQNFGRKKFHFES 222

Query: 126 FWSSYENYEKIVQES 141
           +W+  E+ EK+++E+
Sbjct: 223 WWTLEESSEKVIKEA 233

[Close]

BLAST of HG10019036 vs. ExPASy TrEMBL
Match: A0A5C7HJN1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018377 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 0


Query: 1   MDNSAWVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRR 60
           +D+ +W+ GGD NEIL  KEK GG  +    +  F+  +DDC L DLG+ G   TW NRR
Sbjct: 117 VDDFSWLCGGDFNEILRVKEKSGGSNKSILGICQFREVIDDCNLVDLGFEGPKMTWNNRR 176

Query: 61  DQNLQVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRP 120
           D +  V   +DR LA+  ++ LF    V H G++ SDHRP+ L+    G    ++  R+P
Sbjct: 177 DGDNNVQERIDRMLADTAWIDLFPGARVQHLGYNSSDHRPLLLSF-ADGFQGARKTNRKP 236

Query: 121 FRFNVFWSSYENYEKIVQES 141
           F+F  FW   E   K+++E+
Sbjct: 237 FKFEHFWLKEEECSKVIREA 255

[Close]

BLAST of HG10019036 vs. ExPASy TrEMBL
Match: A0A2N9IEV4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50465 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 59/154 (38.31%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 1   MDNSAWVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRR 60
           M +  WV+ GD N+IL+S EK GG       M+ F+  ++DC + DLG+SG  FTW N  
Sbjct: 816 MHSLPWVMIGDFNDILYSNEKWGGNSPSNSRMAEFRNCINDCNMIDLGFSGPKFTWSNCH 875

Query: 61  DQNLQVSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRP 120
           D    +   LDR +ANP +  LF +  V+H   + SDH PI LTL     P   R   RP
Sbjct: 876 DITSLIMERLDRAIANPNWRILFPEAFVSHLTRTHSDHCPILLTL----CPTIPRSLPRP 935

Query: 121 FRFNVFWSSYENYEKIVQESVGQEEARNHLIWDT 155
           FRF   W S+ ++ KIV+++         + +DT
Sbjct: 936 FRFENIWLSHSDFPKIVEQAWALPATNLSVTFDT 965

[Close]

BLAST of HG10019036 vs. ExPASy TrEMBL
Match: A0A5B6VBB6 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_001451 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 6   WVVGGDLNEILFSKEKQGGPRREEGLMSNFQTALDDCELKDLGYSGNMFTWCNRRDQNLQ 65
           W+V GD NEILF  EK+GG  R++G M  F+  L++C+L D+GYSG  FTW         
Sbjct: 103 WLVAGDFNEILFGNEKKGGGVRDQGRMDVFRDTLEECQLIDIGYSGTWFTWERGNLPETN 162

Query: 66  VSLCLDRFLANPEFMALFLDLIVNHQGWSKSDHRPIELTLRIVGDPLFQRLGRRPFRFNV 125
           +   LDR +AN E+++LF    V H  +S SDH P    L I  D L Q+  R+ F F  
Sbjct: 163 IRERLDRGVANEEWISLFPMGHVQHLPYSMSDHCP----LLICTDHLIQKFWRKKFHFES 222

Query: 126 FWSSYENYEKIVQES 141
           +W   E+ EK+++E+
Sbjct: 223 WWMLEESSEKVIKEA 233

The following BLAST results are available for this feature:

BLAST of HG10019036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_041011336.1	6.8e-22	41.18	uncharacterized protein LOC121255118 [Juglans microcarpa x Juglans regia]	[more]
XP_012831565.1	6.8e-22	42.96	PREDICTED: uncharacterized protein LOC105952547 [Erythranthe guttata]	[more]
XP_012857002.1	8.9e-22	42.55	PREDICTED: uncharacterized protein LOC105976270 [Erythranthe guttata]	[more]
XP_018859783.1	1.5e-21	42.18	uncharacterized protein LOC109021580 [Juglans regia] >KAF5468190.1 hypothetical ...	[more]
KAA3467625.1	2.6e-21	42.22	reverse transcriptase [Gossypium australe]	[more]

BLAST of HG10019036 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4HUH1	7.3e-22	42.18	uncharacterized protein LOC109021580 OS=Juglans regia OX=51240 GN=LOC109021580 P...	[more]
A0A5B6VEN5	1.2e-21	42.22	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_002620 PE=4 SV=1	[more]
A0A5C7HJN1	2.8e-21	39.29	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018377 PE=4 SV=1	[more]
A0A2N9IEV4	2.8e-21	38.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50465 PE=4 SV=1	[more]
A0A5B6VBB6	1.4e-20	41.48	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_001451 PE=4 SV=1	[more]

BLAST of HG10019036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..106 e-value: 1.1E-12 score: 50.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 3..106
None	No IPR available	PANTHER	PTHR33710:SF41	BNAC03G48920D PROTEIN	coord: 10..144
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 10..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019036.1	HG10019036.1	mRNA