HG10019009 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019009
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 13897315 .. 13898133 (+)
RNA-Seq Expression	HG10019009
Synteny	HG10019009

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTACTCTAGCATGGAGGAGGACAAGGACATCTCCATTGTCAGGGGGGTTAGAGTTTCCTTTTCCCTTTTCCGCATAAATGACCTATATTATTTGGCTGACATAGTTGAAGATGAGTATGTTGGATTTCTGACTCAACCATTTGATGAGATCCACGTTCTTGAGGTCCTCTGTGGACCAGGGATCGACTGGATCCGCACAAACGGTCTGGCGTTGCGTTTAAGAGGGACAGATTTAACTGTCTCCAACTAGATCTGGCATGCATTTGTGTGTGCTAGGTTTATGCCCGTCACTCGTCTGGCCGAAGTGACTGAGGATAGAGAGAAGTTCGTGTACTATTTTAGCATAGGTCATTCCATCAACGTCGATAAGGTCGTTTGTGACTCGATCCCACGTAGTAGAAGTTTTGCCACCACTAGAGGTTTTGAGCACCCGTGTTTGATCACGGAGCTCTGCTGACAGGCGGGTGTTGAGATAGGTGATAGGGAGGAGAGGTGCACACCAAAAGGCTCTATCTATAGAACCACTATCTTAGCCTTCCATGGTCATGGCGAGGGGGAACGTGGTGATGAGGATCGCCATGTAGAGGGAGCTCTTGGCAAAGGAGCGCACGTTCACCATGAGGAGGTGAACGTAGAGGAGGTGCATGTAGAGGAAGACTCCTTAGGTCTTCGTGCTCTTAGGATGGCTGAGGAAGCCCTTAGGTTGAGTCCGGAGTCGGCTCGACGTGTTAGGCATATGGAGAGGAGCGTTAACTTTATGAGTGAGCGAGACCGCCTCTATTACGCTAGCATAGGTTTCCACTATGACATCTAG

mRNA sequence

ATGTCGTACTCTAGCATGGAGGAGGACAAGGACATCTCCATTGTCAGGGGGGTTAGAGTTTCCTTTTCCCTTTTCCGCATAAATGACCTATATTATTTGGCTGACATAGTTGAAGATGAGTATGTTGGATTTCTGACTCAACCATTTGATGAGATCCACGTTCTTGAGGTCCTCTGTGGACCAGGGATCGACTGGATCCGCACAAACGGTCTGGCGTTTATGCCCGTCACTCGTCTGGCCGAAGTGACTGAGGATAGAGAGAAGTTCGTGTACTATTTTAGCATAGGTCATTCCATCAACGTCGATAAGGCGGGTGTTGAGATAGGTGATAGGGAGGAGAGGTGCACACCAAAAGGCTCTATCTATAGAACCACTATCTTAGCCTTCCATGGTCATGGCGAGGGGGAACGTGGTGATGAGGATCGCCATGTAGAGGGAGCTCTTGGCAAAGGAGCGCACGTTCACCATGAGGAGGTGAACGTAGAGGAGGTGCATGTAGAGGAAGACTCCTTAGGTCTTCGTGCTCTTAGGATGGCTGAGGAAGCCCTTAGGTTGAGTCCGGAGTCGGCTCGACGTGTTAGGCATATGGAGAGGAGCGTTAACTTTATGAGTGAGCGAGACCGCCTCTATTACGCTAGCATAGGTTTCCACTATGACATCTAG

Coding sequence (CDS)

ATGTCGTACTCTAGCATGGAGGAGGACAAGGACATCTCCATTGTCAGGGGGGTTAGAGTTTCCTTTTCCCTTTTCCGCATAAATGACCTATATTATTTGGCTGACATAGTTGAAGATGAGTATGTTGGATTTCTGACTCAACCATTTGATGAGATCCACGTTCTTGAGGTCCTCTGTGGACCAGGGATCGACTGGATCCGCACAAACGGTCTGGCGTTTATGCCCGTCACTCGTCTGGCCGAAGTGACTGAGGATAGAGAGAAGTTCGTGTACTATTTTAGCATAGGTCATTCCATCAACGTCGATAAGGCGGGTGTTGAGATAGGTGATAGGGAGGAGAGGTGCACACCAAAAGGCTCTATCTATAGAACCACTATCTTAGCCTTCCATGGTCATGGCGAGGGGGAACGTGGTGATGAGGATCGCCATGTAGAGGGAGCTCTTGGCAAAGGAGCGCACGTTCACCATGAGGAGGTGAACGTAGAGGAGGTGCATGTAGAGGAAGACTCCTTAGGTCTTCGTGCTCTTAGGATGGCTGAGGAAGCCCTTAGGTTGAGTCCGGAGTCGGCTCGACGTGTTAGGCATATGGAGAGGAGCGTTAACTTTATGAGTGAGCGAGACCGCCTCTATTACGCTAGCATAGGTTTCCACTATGACATCTAG

Protein sequence

MSYSSMEEDKDISIVRGVRVSFSLFRINDLYYLADIVEDEYVGFLTQPFDEIHVLEVLCGPGIDWIRTNGLAFMPVTRLAEVTEDREKFVYYFSIGHSINVDKAGVEIGDREERCTPKGSIYRTTILAFHGHGEGERGDEDRHVEGALGKGAHVHHEEVNVEEVHVEEDSLGLRALRMAEEALRLSPESARRVRHMERSVNFMSERDRLYYASIGFHYDI

Homology

[Close]

BLAST of HG10019009 vs. NCBI nr
Match: TYK04780.1 (hypothetical protein E5676_scaffold68G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-08
Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 6   MEEDKDISIVRGVRVSFSLFRINDLYYLADIVEDEYVGFLTQPFDEIHVLEVLCGPGIDW 65
           M+ED+D   ++G  VSF+   IN ++ L DI  DEY+ F+ +  D   +++ L GPG +W
Sbjct: 122 MDEDRDSRTIQGCLVSFNAKPINHVFCLLDIERDEYIDFIRREMDVTSIIKALYGPGANW 181

Query: 66  IRTNGLAFMPVTRLAEVTEDREKFVYYFSIGHSINVDK----AGVEIGDREERCTPKGSI 125
           + T  L   P+ R     +     +   +IGH   + K    A VE    EE   P   +
Sbjct: 182 VDTRHL---PLKRY----KGEGMLLCALAIGHPSLITKLCRRAWVEFDLNEEMIPPNSVL 241

Query: 126 YRTTILAFHGHGE 135
            R++I +  GH E
Sbjct: 242 NRSSISSIKGHME 247

[Close]

BLAST of HG10019009 vs. ExPASy TrEMBL
Match: A0A5D3C077 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00970 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 6   MEEDKDISIVRGVRVSFSLFRINDLYYLADIVEDEYVGFLTQPFDEIHVLEVLCGPGIDW 65
           M+ED+D   ++G  VSF+   IN ++ L DI  DEY+ F+ +  D   +++ L GPG +W
Sbjct: 122 MDEDRDSRTIQGCLVSFNAKPINHVFCLLDIERDEYIDFIRREMDVTSIIKALYGPGANW 181

Query: 66  IRTNGLAFMPVTRLAEVTEDREKFVYYFSIGHSINVDK----AGVEIGDREERCTPKGSI 125
           + T  L   P+ R     +     +   +IGH   + K    A VE    EE   P   +
Sbjct: 182 VDTRHL---PLKRY----KGEGMLLCALAIGHPSLITKLCRRAWVEFDLNEEMIPPNSVL 241

Query: 126 YRTTILAFHGHGE 135
            R++I +  GH E
Sbjct: 242 NRSSISSIKGHME 247

The following BLAST results are available for this feature:

BLAST of HG10019009 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04780.1	2.1e-08	31.58	hypothetical protein E5676_scaffold68G00970 [Cucumis melo var. makuwa]	[more]

BLAST of HG10019009 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C077	1.0e-08	31.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10019009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019009.1	HG10019009.1	mRNA