HG10018985 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018985
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Glycine cleavage T-protein family
Location	Chr04: 13158748 .. 13159677 (+)
RNA-Seq Expression	HG10018985
Synteny	HG10018985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTTTGGAATTCAATTTCTCTCAACAAGGGTACTCATTTCTTGCCTTAATTTTATTATATATATATATATATATTTTAATTGTAGATCCAAGGTGGATCGATTACTTAATTTCTAATCTCTGTAGGTTGTTACAAGGGACAAGAGACAATATCTAGATTAATAACATATGATGGAGTAAAGCAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTAGCTACTTTTTATTTTAGTTTTCATTTTTTGTGGAAATTGAATTTTTTTGTCAAATACTCCCCTCTAATCATGAACCTCCCTTTCCTTCGTCAAGAAACTGATTATATAGGATTTGAATTAGGGTGTGCACAAATTTGCCGGTTGGTCGGCTGTCACACACATACATCTGAAGTCGATTTTCGGTGCCAGTTTTCTCCCAAAACCGACACCGACCGAACGATATAAATCCCTAATTTGAATGTAGTCAAGAACTCTCTTTGAAATACTGGACTCTGAAGAACTGTCGCTGAAAAATTTCTTCTCACCTCGTACATGAAACTTCTAAACTGTCACTAATAGAATCTCTCCTTTACATTATGAGCATGTTTTAGGTTGAATATGTATACTTTTTGATCCATGCCAAGAAAATTTGTGTAGGTGGGAAAACTTACAAGCTATACACCAGGAAGAAAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACACTGTAATTGTTGGAGAAAACACCATTGGTAGGGTGGTGGAAGTTCCATTCTTAGCTCGACAACAACCTTTAAGCAACAGCTCAAGTAACACGCCTCAAAGCAGTGTACAATAG

mRNA sequence

ATGCCATCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTTTGGAATTCAATTTCTCTCAACAAGGGTTGTTACAAGGGACAAGAGACAATATCTAGATTAATAACATATGATGGAGTAAAGCAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTGGGAAAACTTACAAGCTATACACCAGGAAGAAAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACACTGTAATTGTTGGAGAAAACACCATTGGTAGGGTGGTGGAAGTTCCATTCTTAGCTCGACAACAACCTTTAAGCAACAGCTCAAGTAACACGCCTCAAAGCAGTGTACAATAG

Coding sequence (CDS)

ATGCCATCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTTTGGAATTCAATTTCTCTCAACAAGGGTTGTTACAAGGGACAAGAGACAATATCTAGATTAATAACATATGATGGAGTAAAGCAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTGGGAAAACTTACAAGCTATACACCAGGAAGAAAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACACTGTAATTGTTGGAGAAAACACCATTGGTAGGGTGGTGGAAGTTCCATTCTTAGCTCGACAACAACCTTTAAGCAACAGCTCAAGTAACACGCCTCAAAGCAGTGTACAATAG

Protein sequence

MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKSEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLARQQPLSNSSSNTPQSSVQ

Homology

[Close]

BLAST of HG10018985 vs. NCBI nr
Match: XP_038887599.1 (putative transferase At1g60990, chloroplastic [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.2e-68
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKEL+DEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 306 MPAPQKELSDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 365

Query: 61  GSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGKRVGKLTSYTPGRK SEHFGLGYIKKRAAS+GDTVIVGENTIG+VVEVPFLA
Sbjct: 366 GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASNGDTVIVGENTIGKVVEVPFLA 425

Query: 121 RQQPLSNSSSNTPQSSVQ 138
           RQQP+SNSSSNTPQSSVQ
Sbjct: 426 RQQPISNSSSNTPQSSVQ 443

[Close]

BLAST of HG10018985 vs. NCBI nr
Match: XP_022988791.1 (putative transferase At1g60990, chloroplastic [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 295 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 354

Query: 61  GSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA
Sbjct: 355 GSPITIDGKKVGKLTSYTPGRKGLEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 414

Query: 121 RQQPLSNSSSNTPQSSVQ 138
           RQ PLSNSSSN P+SSVQ
Sbjct: 415 RQPPLSNSSSNLPRSSVQ 432

[Close]

BLAST of HG10018985 vs. NCBI nr
Match: XP_023531687.1 (putative transferase At1g60990, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 290 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 349

Query: 61  GSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA
Sbjct: 350 GSPITIDGKKVGKLTSYTPGRKGLEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 409

Query: 121 RQQPLSNSSSNTPQSSVQ 138
           RQ PLSNS SN P+SSVQ
Sbjct: 410 RQPPLSNSPSNLPRSSVQ 427

[Close]

BLAST of HG10018985 vs. NCBI nr
Match: KAG7022574.1 (putative transferase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 295 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 354

Query: 61  GSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDG++VGKLTSYTPGRK  EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA
Sbjct: 355 GSPITIDGRKVGKLTSYTPGRKGLEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 414

Query: 121 RQQPLSNSSSNTPQSSVQ 138
           RQ PLSN+SSN P+SSVQ
Sbjct: 415 RQPPLSNTSSNLPRSSVQ 432

[Close]

BLAST of HG10018985 vs. NCBI nr
Match: XP_004140110.1 (putative transferase At1g60990, chloroplastic isoform X1 [Cucumis sativus] >KGN47936.1 hypothetical protein Csa_003267 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 130/139 (93.53%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 307 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 366

Query: 61  GSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGKRVGKLTSY PGRK SEHFGLGYIKK+AAS GD+VIVGENTIG+VVEVPFLA
Sbjct: 367 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASVGDSVIVGENTIGKVVEVPFLA 426

Query: 121 RQQPLSN-SSSNTPQSSVQ 138
           RQQPLSN SSSNTP+SSVQ
Sbjct: 427 RQQPLSNSSSSNTPESSVQ 445

[Close]

BLAST of HG10018985 vs. ExPASy Swiss-Prot
Match: Q681Y3 (Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g60990 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-47
Identity = 94/130 (72.31%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 2   PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPG 61
           P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPG
Sbjct: 303 PAPERELSKEFNVLEAGLWNSISLNKGCYKGQETIARLMTYDGIKQRLCGLNLSAPSEPG 362

Query: 62  SPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLAR 121
           S IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+TV VGE+  G V EVP+LAR
Sbjct: 363 STITVDGKKVGKLTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDISGIVSEVPYLAR 422

Query: 122 QQPLSNSSSN 131
           Q P S +SS+
Sbjct: 423 QHPPSANSSS 432

[Close]

BLAST of HG10018985 vs. ExPASy Swiss-Prot
Match: Q67N36 (Aminomethyltransferase OS=Symbiobacterium thermophilum (strain T / IAM 14863) OX=292459 GN=gcvT PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 39/125 (31.20%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGC-YKGQETISRLITYDGVKQRLWGLQLSDSVE 60
           +P    E++D+ N LEAGL  ++ L KG  + G++ ++R I   G  ++L G+++ D   
Sbjct: 246 LPLYGHEISDQHNPLEAGLGFAVKLKKGVDFIGRDALAR-IKEQGPTRKLVGIEMIDRGV 305

Query: 61  P--GSPITIDGKRVGKLT--SYTPGRKSEHFGLGYIKKRAASSG---DTVIVGENTIGRV 118
           P  G P+ + G+ VG++T  S++P    ++  L Y+    ++ G   + +I G     RV
Sbjct: 306 PRQGYPVAVGGEVVGEVTTGSFSP-TLEKNIALAYVPVAHSAVGTEVEVIIRGRALKARV 365

[Close]

BLAST of HG10018985 vs. ExPASy Swiss-Prot
Match: Q1INT8 (Aminomethyltransferase OS=Koribacter versatilis (strain Ellin345) OX=204669 GN=gcvT PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-05
Identity = 35/112 (31.25%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           +P    E++DE NV EAGL   + ++KG + G+  + +    DGVK+ L GL   +++E 
Sbjct: 250 LPLYGHEISDEINVWEAGLDRFLKMDKGDFIGRAALEK-AKNDGVKRALVGL---ETIER 309

Query: 61  GSP------ITIDGKRVGKLT--SYTPGRKSEHFGLGYIKKRAASSGDTVIV 105
           G P      + ++GK +G +T  SY P  K  +  L Y+    ++  + V V
Sbjct: 310 GIPRDGYKVLDLEGKEIGYVTSGSYMPFLK-RNLALAYVPVEQSALDNIVAV 356

[Close]

BLAST of HG10018985 vs. ExPASy TrEMBL
Match: A0A6J1JI89 (putative transferase At1g60990, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486027 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 295 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 354

Query: 61  GSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA
Sbjct: 355 GSPITIDGKKVGKLTSYTPGRKGLEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 414

Query: 121 RQQPLSNSSSNTPQSSVQ 138
           RQ PLSNSSSN P+SSVQ
Sbjct: 415 RQPPLSNSSSNLPRSSVQ 432

[Close]

BLAST of HG10018985 vs. ExPASy TrEMBL
Match: A0A0A0KJI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G417880 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.5e-66
Identity = 130/139 (93.53%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 307 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 366

Query: 61  GSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGKRVGKLTSY PGRK SEHFGLGYIKK+AAS GD+VIVGENTIG+VVEVPFLA
Sbjct: 367 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASVGDSVIVGENTIGKVVEVPFLA 426

Query: 121 RQQPLSN-SSSNTPQSSVQ 138
           RQQPLSN SSSNTP+SSVQ
Sbjct: 427 RQQPLSNSSSSNTPESSVQ 445

[Close]

BLAST of HG10018985 vs. ExPASy TrEMBL
Match: A0A6J1EI20 (putative transferase At1g60990, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111434553 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.8e-65
Identity = 128/138 (92.75%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 295 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 354

Query: 61  GSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGK+VGKLTSYTPGRK  EHFGLGYIKKRAAS GDTVIVGENTIGRVVEVPFLA
Sbjct: 355 GSPITIDGKKVGKLTSYTPGRKGLEHFGLGYIKKRAASCGDTVIVGENTIGRVVEVPFLA 414

Query: 121 RQQPLSNSSSNTPQSSVQ 138
            Q PLSNSSSN P+ SVQ
Sbjct: 415 GQPPLSNSSSNLPRRSVQ 432

[Close]

BLAST of HG10018985 vs. ExPASy TrEMBL
Match: A0A6J1DYD6 (LOW QUALITY PROTEIN: putative transferase At1g60990, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025359 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 128/138 (92.75%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 306 MPTPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 365

Query: 61  GSPITIDGKRVGKLTSYTPGRKS-EHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GS ITIDGKRVGKLTSYTPGRK  EHFGLGYIKKRAAS+GDTVIVGENTIG VVEVPFLA
Sbjct: 366 GSSITIDGKRVGKLTSYTPGRKGLEHFGLGYIKKRAASNGDTVIVGENTIGXVVEVPFLA 425

Query: 121 RQQPLSNSSSNTPQSSVQ 138
           RQQPLSNSSS T Q SV+
Sbjct: 426 RQQPLSNSSSITSQGSVE 443

[Close]

BLAST of HG10018985 vs. ExPASy TrEMBL
Match: A0A5A7UN60 (Putative transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001980 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-64
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 60
           MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP
Sbjct: 192 MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 251

Query: 61  GSPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLA 120
           GSPITIDGKRVGKLTSY PGRK SEHFGLGYIKK+AAS GDTVIVGE+T G VVEVPFLA
Sbjct: 252 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASIGDTVIVGEDTTGTVVEVPFLA 311

Query: 121 RQQPLSNSS-SNTPQSSVQ 138
           RQQPLSNSS S+TP+SSVQ
Sbjct: 312 RQQPLSNSSPSSTPESSVQ 330

[Close]

BLAST of HG10018985 vs. TAIR 10
Match: AT1G60990.1 (Glycine cleavage T-protein family )

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-48
Identity = 94/130 (72.31%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 2   PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPG 61
           P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPG
Sbjct: 303 PAPERELSKEFNVLEAGLWNSISLNKGCYKGQETIARLMTYDGIKQRLCGLNLSAPSEPG 362

Query: 62  SPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLAR 121
           S IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+TV VGE+  G V EVP+LAR
Sbjct: 363 STITVDGKKVGKLTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDISGIVSEVPYLAR 422

Query: 122 QQPLSNSSSN 131
           Q P S +SS+
Sbjct: 423 QHPPSANSSS 432

[Close]

BLAST of HG10018985 vs. TAIR 10
Match: AT1G60990.2 (Glycine cleavage T-protein family )

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-48
Identity = 94/130 (72.31%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 2   PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPG 61
           P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPG
Sbjct: 303 PAPERELSKEFNVLEAGLWNSISLNKGCYKGQETIARLMTYDGIKQRLCGLNLSAPSEPG 362

Query: 62  SPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLAR 121
           S IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+TV VGE+  G V EVP+LAR
Sbjct: 363 STITVDGKKVGKLTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDISGIVSEVPYLAR 422

Query: 122 QQPLSNSSSN 131
           Q P S +SS+
Sbjct: 423 QHPPSANSSS 432

[Close]

BLAST of HG10018985 vs. TAIR 10
Match: AT1G60990.3 (Glycine cleavage T-protein family )

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-48
Identity = 94/130 (72.31%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 2   PSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEPG 61
           P+P++EL+ EFNVLEAGLWNSISLNKGCYKGQETI+RL+TYDG+KQRL GL LS   EPG
Sbjct: 303 PAPERELSKEFNVLEAGLWNSISLNKGCYKGQETIARLMTYDGIKQRLCGLNLSAPSEPG 362

Query: 62  SPITIDGKRVGKLTSYTPGRK-SEHFGLGYIKKRAASSGDTVIVGENTIGRVVEVPFLAR 121
           S IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+TV VGE+  G V EVP+LAR
Sbjct: 363 STITVDGKKVGKLTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDISGIVSEVPYLAR 422

Query: 122 QQPLSNSSSN 131
           Q P S +SS+
Sbjct: 423 QHPPSANSSS 432

The following BLAST results are available for this feature:

BLAST of HG10018985 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887599.1	3.2e-68	95.65	putative transferase At1g60990, chloroplastic [Benincasa hispida]	[more]
XP_022988791.1	6.1e-67	94.93	putative transferase At1g60990, chloroplastic [Cucurbita maxima]	[more]
XP_023531687.1	2.3e-66	94.20	putative transferase At1g60990, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7022574.1	3.0e-66	93.48	putative transferase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004140110.1	2.0e-65	93.53	putative transferase At1g60990, chloroplastic isoform X1 [Cucumis sativus] >KGN4...	[more]

BLAST of HG10018985 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q681Y3	1.5e-47	72.31	Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q67N36	1.5e-07	31.20	Aminomethyltransferase OS=Symbiobacterium thermophilum (strain T / IAM 14863) OX...	[more]
Q1INT8	2.4e-05	31.25	Aminomethyltransferase OS=Koribacter versatilis (strain Ellin345) OX=204669 GN=g...	[more]

BLAST of HG10018985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JI89	3.0e-67	94.93	putative transferase At1g60990, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0KJI9	9.5e-66	93.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G417880 PE=3 SV=1	[more]
A0A6J1EI20	2.8e-65	92.75	putative transferase At1g60990, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DYD6	1.1e-64	92.75	LOW QUALITY PROTEIN: putative transferase At1g60990, chloroplastic OS=Momordica ...	[more]
A0A5A7UN60	1.8e-64	92.81	Putative transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280...	[more]

BLAST of HG10018985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60990.1	1.0e-48	72.31	Glycine cleavage T-protein family	[more]
AT1G60990.2	1.0e-48	72.31	Glycine cleavage T-protein family	[more]
AT1G60990.3	1.0e-48	72.31	Glycine cleavage T-protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..137
None	No IPR available	PANTHER	PTHR13847	SARCOSINE DEHYDROGENASE-RELATED	coord: 2..129
None	No IPR available	PANTHER	PTHR13847:SF262	MALATE:QUINONE OXIDOREDUCTASE	coord: 2..129
None	No IPR available	SUPERFAMILY	103025	Folate-binding domain	coord: 2..39
IPR027266	GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1	GENE3D	3.30.1360.120	Probable tRNA modification gtpase trme; domain 1	coord: 1..118 e-value: 1.8E-29 score: 105.0
IPR013977	Glycine cleavage T-protein, C-terminal barrel domain	PFAM	PF08669	GCV_T_C	coord: 48..105 e-value: 5.3E-7 score: 29.5
IPR017703	YgfZ/GcvT conserved site	TIGRFAM	TIGR03317	TIGR03317	coord: 2..53 e-value: 1.1E-14 score: 52.2
IPR029043	Glycine cleavage T-protein/YgfZ, C-terminal	SUPERFAMILY	101790	Aminomethyltransferase beta-barrel domain	coord: 48..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018985.1	HG10018985.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity