HG10018954 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018954
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Plant transposase
Location	Chr04: 12333386 .. 12334998 (+)
RNA-Seq Expression	HG10018954
Synteny	HG10018954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGATTATGGAGGGCTGAAAAATCTCGTCTGGTAAAACAAATTCGAGATGCCCCAACAAAGGATGCACTTTTGAAGCTAATGCCTGATAATTTGCAATCTGTAGATGATTGGATGGACTATGTGAGTGACAAGACTAGTGCAAACTTCATGGTATGAAAATATCTACTTGAAAAAACATAATTTTACATTTTCATATTATTAGTATGACATAAGTATTGGATATGTCTTTTGTTTGAGTAGTTGAAAAGTGAAAAATATAAAGCCATGAAGAAGAAACAACTCCCACATACATGTTGTAAGAAAGGATATGCTCGTTTGGCTGAAGAGATGGTAAAGATCATTATCACTATAGTTCAATTTTTCTTTCATATTGTATTTGAATTCATTTTCTAATTTTATTTTATAGAATAAAAGTTCTTCAAATCCAACTTCAATCACAAGGATTACATTGTGGACAAAGGCACACAAAAGGAAGGATGGACAACTAGTGAATGCACAAGTTGCTGAGACACTCATATGTTTTTTCGCTATTTTCTTTATAATAATTGACTTTATTGGGACCTTTGCTAGGACATTTTGCTTATAAGGTTTGTATACTTTTGTTGAAGATGACTTTATTGAAGTACTATGCTATTTTTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTGGGGGAGGGGAGAGTGGTGAAAATAAAATTTGACTTTTTTGTGTACTTTTGTTGGAGATGCTTTGATTGAATTATACTATGGTTTTTTTGCGCGGGAGGGCAAGGGTGAAAAAGTTTATAAGATTTGACTTTGTTTTGCTTATAGAGTTTGTATACTTTTGTTGAAGATGACTTAGTTGAATTATTCTTTTTTTTTCTTTTTGTTTTTTTGGGAGGGGGGAGGTGAAAAAGCTTATAAGATTTGACTTTGTTGGGACATTCTCTTATAGAGTTTGTGTACTTTTGTTGAAAGTTTGTTGTGATATTCTTGTTGTCCTTGGAAGAGCGTTGTCCTTTGTTGTGATATCTTGAAGGAGTTGTACTTATGAATTTGTTGCTCAAGGATAGACACACATTGAAAGTTCACATTTTTTTCCATTGTGGGATTTGCATTATATAATTTTCATGTGCTTGTTGCTAGGAGCACATTGAACAAACTGAGGTTGTGCGATAACTTCCACAAATAATGTGGTTGATGATGTCTTGAGTAAAGTTCTTGGCCCTGATCGTGGGCATGTAAGAGGATTTGGGTTTGGTGTGACTCGTTCAAAATTATCTCTCTTGTCTCAACAAGATAACAAATACAAAATTCTTGAAAGCCAATATTTAAAGATGAAGGAGGAAATGATAGAAATGAAAGCAATGAAAGAGGAAATGGTAGAAACGAAAACAATTATGTGAAGTCTTTTACAGAAACAGGTAAATTTTTTCATTAAGGACCTTAATTCTTATTTTTTATGTTTTGAGTTTACTCCATATTTTGTTTCATATGAAATTATCATAGGCTGAACCAAGTGAGGAACTTTCAAATGCTACTGCAAGTGTACCTAAGCCCATAAATATACCTTCAACTTTTTCAATGTCTTCTCCATCGATAAATTTATTTGTCGTGTGA

mRNA sequence

ATGGGTAGATTATGGAGGGCTGAAAAATCTCGTCTGGTAAAACAAATTCGAGATGCCCCAACAAAGGATGCACTTTTGAAGCTAATGCCTGATAATTTGCAATCTGTAGATGATTGGATGGACTATGTGAGTGACAAGACTAGTGCAAACTTCATGGCTGAACCAAGTGAGGAACTTTCAAATGCTACTGCAAGTGTACCTAAGCCCATAAATATACCTTCAACTTTTTCAATGTCTTCTCCATCGATAAATTTATTTGTCGTGTGA

Coding sequence (CDS)

ATGGGTAGATTATGGAGGGCTGAAAAATCTCGTCTGGTAAAACAAATTCGAGATGCCCCAACAAAGGATGCACTTTTGAAGCTAATGCCTGATAATTTGCAATCTGTAGATGATTGGATGGACTATGTGAGTGACAAGACTAGTGCAAACTTCATGGCTGAACCAAGTGAGGAACTTTCAAATGCTACTGCAAGTGTACCTAAGCCCATAAATATACCTTCAACTTTTTCAATGTCTTCTCCATCGATAAATTTATTTGTCGTGTGA

Protein sequence

MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANFMAEPSEELSNATASVPKPINIPSTFSMSSPSINLFVV

Homology

[Close]

BLAST of HG10018954 vs. NCBI nr
Match: KAA0041468.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 7.5e-18
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANFMAEPSEELS 60
           MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F  + S + S
Sbjct: 170 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATFKRKSSSDPS 229

Query: 61  NAT 64
           + T
Sbjct: 230 SVT 232

[Close]

BLAST of HG10018954 vs. NCBI nr
Match: TYK09493.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
           MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 145 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 195

[Close]

BLAST of HG10018954 vs. NCBI nr
Match: TYK07512.1 (uncharacterized protein E5676_scaffold1702G00300 [Cucumis melo var. makuwa] >TYK21220.1 uncharacterized protein E5676_scaffold359G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1    MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
            MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 1005 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 1055

[Close]

BLAST of HG10018954 vs. NCBI nr
Match: KAA0036985.1 (uncharacterized protein E6C27_scaffold86G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1    MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
            MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 1042 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 1092

[Close]

BLAST of HG10018954 vs. NCBI nr
Match: KAA0056210.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
           MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 495 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 545

[Close]

BLAST of HG10018954 vs. ExPASy TrEMBL
Match: A0A5A7TEX1 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00480 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANFMAEPSEELS 60
           MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F  + S + S
Sbjct: 170 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATFKRKSSSDPS 229

Query: 61  NAT 64
           + T
Sbjct: 230 SVT 232

[Close]

BLAST of HG10018954 vs. ExPASy TrEMBL
Match: A0A5D3DCM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00300 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1    MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
            MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 1005 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 1055

[Close]

BLAST of HG10018954 vs. ExPASy TrEMBL
Match: A0A5A7UM47 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00020 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
           MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 495 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 545

[Close]

BLAST of HG10018954 vs. ExPASy TrEMBL
Match: A0A5D3CCB4 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00930 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
           MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 145 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 195

[Close]

BLAST of HG10018954 vs. ExPASy TrEMBL
Match: A0A5A7T672 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00660 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1    MGRLWRAEKSRLVKQIRDAPTKDALLKLMPDNLQSVDDWMDYVSDKTSANF 52
            MGRLWRA KSRLVKQIRDAPTKDA+LKLMPDNLQSVDDWMD+VS+KTSA F
Sbjct: 1042 MGRLWRAGKSRLVKQIRDAPTKDAILKLMPDNLQSVDDWMDFVSEKTSATF 1092

The following BLAST results are available for this feature:

BLAST of HG10018954 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041468.1	7.5e-18	77.78	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK09493.1	6.4e-17	90.20	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK07512.1	6.4e-17	90.20	uncharacterized protein E5676_scaffold1702G00300 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0036985.1	6.4e-17	90.20	uncharacterized protein E6C27_scaffold86G00660 [Cucumis melo var. makuwa]	[more]
KAA0056210.1	6.4e-17	90.20	integrase [Cucumis melo var. makuwa]	[more]

BLAST of HG10018954 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEX1	3.6e-18	77.78	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G0048...	[more]
A0A5D3DCM2	3.1e-17	90.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UM47	3.1e-17	90.20	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00020 PE=4 ...	[more]
A0A5D3CCB4	3.1e-17	90.20	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00...	[more]
A0A5A7T672	3.1e-17	90.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of HG10018954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018954.1	HG10018954.1	mRNA