HG10018834 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018834
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mads box protein, putative
Location	Chr04: 9425147 .. 9425344 (+)
RNA-Seq Expression	HG10018834
Synteny	HG10018834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGGAAGAAAATTCAGATCAAGAAGATTGACAACATAGCTGCAAGACAAGTTGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTAAAGAGCTTGCAATTCTTTGTGATGCTGAGATTGGCCTTCTTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTATGCAAGTTCAAGGTTTTCTCTCTCTTAA

mRNA sequence

ATGACAAGGAAGAAAATTCAGATCAAGAAGATTGACAACATAGCTGCAAGACAAGTTGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTAAAGAGCTTGCAATTCTTTGTGATGCTGAGATTGGCCTTCTTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTATGCAAGTTCAAGGTTTTCTCTCTCTTAA

Coding sequence (CDS)

ATGACAAGGAAGAAAATTCAGATCAAGAAGATTGACAACATAGCTGCAAGACAAGTTGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTAAAGAGCTTGCAATTCTTTGTGATGCTGAGATTGGCCTTCTTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTATGCAAGTTCAAGGTTTTCTCTCTCTTAA

Protein sequence

MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSRFSLS

Homology

[Close]

BLAST of HG10018834 vs. NCBI nr
Match: XP_023511719.1 (MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.2 bits (282), Expect = 8.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. NCBI nr
Match: XP_031744925.1 (MADS-box protein SVP isoform X2 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 8.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. NCBI nr
Match: XP_038886864.1 (MADS-box protein SVP-like isoform X3 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 8.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. NCBI nr
Match: XP_038886865.1 (MADS-box protein SVP-like isoform X4 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 8.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. NCBI nr
Match: XP_022971944.1 (MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 8.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-18
Identity = 43/60 (71.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R+KIQIKKIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLFDY+SS
Sbjct: 1  MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

[Close]

BLAST of HG10018834 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.8e-18
Identity = 42/61 (68.85%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L++FSA+GKLF+++SS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of HG10018834 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-17
Identity = 42/58 (72.41%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 3  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 61
          R++I I++IDN+AARQV FSKRR+GLFKKA+EL+ILCDAE+GL+VFSA+GKLF +AS+
Sbjct: 22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAST 79

[Close]

BLAST of HG10018834 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-17
Identity = 40/60 (66.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLF++ SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

[Close]

BLAST of HG10018834 vs. ExPASy Swiss-Prot
Match: Q6VAM4 (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS23 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-16
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R KI+IK+IDN  +RQV FSKRR GLFKKA+EL+ILCDAE+GLLVFS++ +L+D+ASS
Sbjct: 1  MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

[Close]

BLAST of HG10018834 vs. ExPASy TrEMBL
Match: A0A6J1IA12 (MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. ExPASy TrEMBL
Match: A0A6J1I4L2 (MADS-box protein JOINTLESS-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. ExPASy TrEMBL
Match: A0A6J1I8F3 (MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. ExPASy TrEMBL
Match: A0A6J1GL18 (MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454957 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. ExPASy TrEMBL
Match: A0A6J1GJY0 (MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454957 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of HG10018834 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-19
Identity = 42/61 (68.85%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L++FSA+GKLF+++SS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of HG10018834 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-18
Identity = 40/60 (66.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLF++ SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

[Close]

BLAST of HG10018834 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-17
Identity = 39/56 (69.64%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFD 57
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLFD
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFD 56

[Close]

BLAST of HG10018834 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-17
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R KI I++ID+  +RQV FSKRRKGL KKAKELAILCDAE+GL++FS++GKL+D+ASS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

[Close]

BLAST of HG10018834 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 83.6 bits (205), Expect = 6.5e-17
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60
          M R KI I++IDN  +RQV FSKRR GL KKAKEL+ILCDAE+G+++FS++GKL+DYAS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

The following BLAST results are available for this feature:

BLAST of HG10018834 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511719.1	8.3e-22	100.00	MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo]	[more]
XP_031744925.1	8.3e-22	100.00	MADS-box protein SVP isoform X2 [Cucumis sativus]	[more]
XP_038886864.1	8.3e-22	100.00	MADS-box protein SVP-like isoform X3 [Benincasa hispida]	[more]
XP_038886865.1	8.3e-22	100.00	MADS-box protein SVP-like isoform X4 [Benincasa hispida]	[more]
XP_022971944.1	8.3e-22	100.00	MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima]	[more]

BLAST of HG10018834 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUY6	3.4e-18	71.67	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
O82794	5.8e-18	68.85	MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1	[more]
Q5K4R0	3.7e-17	72.41	MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q9FVC1	6.4e-17	66.67	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
Q6VAM4	1.4e-16	70.00	MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of HG10018834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IA12	4.0e-22	100.00	MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I4L2	4.0e-22	100.00	MADS-box protein JOINTLESS-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I8F3	4.0e-22	100.00	MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GL18	4.0e-22	100.00	MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1GJY0	4.0e-22	100.00	MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of HG10018834 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24540.1	4.1e-19	68.85	AGAMOUS-like 24	[more]
AT2G22540.1	4.5e-18	66.67	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.2	2.2e-17	69.64	K-box region and MADS-box transcription factor family protein	[more]
AT4G37940.1	2.2e-17	70.00	AGAMOUS-like 21	[more]
AT2G14210.1	6.5e-17	66.67	AGAMOUS-like 44	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 66.87 coord: 38..59 score: 54.81 coord: 3..23 score: 53.82
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.0E-34 score: 131.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 2.7E-23 score: 81.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 27.978195
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..64 e-value: 4.8E-22 score: 79.6
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..61
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..61
None	No IPR available	PANTHER	PTHR48019:SF6	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018834.1	HG10018834.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding