HG10018800 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018800
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Phloem filament protein
Location	Chr04: 8784386 .. 8784904 (-)
RNA-Seq Expression	HG10018800
Synteny	HG10018800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTTGGTGCAGGTTTTAATCTTGGCTTTGGTCTTGGCGGTCTTGGTTTAGGTTTATCAGGCAGTGCTGGCATCGGTATTGGCGGCGCTGGCATCAATCTCGGTGGTGGCATAGGTATTGGTGGTGGTCTCCGTAGACGCAGTTATAACCCAAACAGCGAAGATGACGACGGCGGTAATGGCGAAGAGGTTGTCGTTGATCCTTCCACATTGGTTCCAACTGATCCAGGCAGCCCTAATGTTCAAGAAGCTGCACAGTTTGCAGTGAGTAAGTTCAACGAGGACTATAAAAATAATCTCAAGTACAAGTACGTTTTTGAAGCTTGGATTGAACCGCTGGATGTAGACACTAACAGGTATCTTCTCAAGTTAGTAGCACAAGACTGTTTGGAACGTTTGCTCACCTTTCTGGTTGTTGTGCTTGAAAAAAGAGAAGGCGAGGTCAAGTATTTCACACTTGAATATTTCGAGCAAATCAAGTATTTGGCAATTGAACCTTTGAAGCCAATTAACTAA

mRNA sequence

ATGACTCTTGGTGCAGGTTTTAATCTTGGCTTTGGTCTTGGCGGTCTTGGTTTAGGTTTATCAGGCAGTGCTGGCATCGGTATTGGCGGCGCTGGCATCAATCTCGGTGGTGGCATAGGTATTGGTGGTGGTCTCCGTAGACGCAGTTATAACCCAAACAGCGAAGATGACGACGGCGGTAATGGCGAAGAGGTTGTCGTTGATCCTTCCACATTGGTTCCAACTGATCCAGGCAGCCCTAATGTTCAAGAAGCTGCACAGTTTGCAGTGAGTAAGTTCAACGAGGACTATAAAAATAATCTCAAGTACAAGTACGTTTTTGAAGCTTGGATTGAACCGCTGGATGTAGACACTAACAGGTATCTTCTCAAGTTAGTAGCACAAGACTGTTTGGAACGTTTGCTCACCTTTCTGGTTGTTGTGCTTGAAAAAAGAGAAGGCGAGGTCAAGTATTTCACACTTGAATATTTCGAGCAAATCAAGTATTTGGCAATTGAACCTTTGAAGCCAATTAACTAA

Coding sequence (CDS)

ATGACTCTTGGTGCAGGTTTTAATCTTGGCTTTGGTCTTGGCGGTCTTGGTTTAGGTTTATCAGGCAGTGCTGGCATCGGTATTGGCGGCGCTGGCATCAATCTCGGTGGTGGCATAGGTATTGGTGGTGGTCTCCGTAGACGCAGTTATAACCCAAACAGCGAAGATGACGACGGCGGTAATGGCGAAGAGGTTGTCGTTGATCCTTCCACATTGGTTCCAACTGATCCAGGCAGCCCTAATGTTCAAGAAGCTGCACAGTTTGCAGTGAGTAAGTTCAACGAGGACTATAAAAATAATCTCAAGTACAAGTACGTTTTTGAAGCTTGGATTGAACCGCTGGATGTAGACACTAACAGGTATCTTCTCAAGTTAGTAGCACAAGACTGTTTGGAACGTTTGCTCACCTTTCTGGTTGTTGTGCTTGAAAAAAGAGAAGGCGAGGTCAAGTATTTCACACTTGAATATTTCGAGCAAATCAAGTATTTGGCAATTGAACCTTTGAAGCCAATTAACTAA

Protein sequence

MTLGAGFNLGFGLGGLGLGLSGSAGIGIGGAGINLGGGIGIGGGLRRRSYNPNSEDDDGGNGEEVVVDPSTLVPTDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERLLTFLVVVLEKREGEVKYFTLEYFEQIKYLAIEPLKPIN

Homology

[Close]

BLAST of HG10018800 vs. NCBI nr
Match: TYK06876.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-11
Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 18  LGLSGSAGIGIGGAGINL--GGGIGIGGGLRRRSYNPNSEDDDGGNGEEVVVDPSTLVPT 77
           LG+ G  GIG+   G+N+  GGGIGIGGG         S+D  G   EEV+         
Sbjct: 4   LGIGGGIGIGLRLPGLNISAGGGIGIGGG-------DKSDDPSGWVPEEVI--------- 63

Query: 78  DPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERLL 137
                   +AA++AV KFN+D+ N+LK++YVF+  I  +DV T  Y ++LVA+DCL R L
Sbjct: 64  --------KAAEYAVFKFNKDHGNDLKFQYVFKHSIRQIDVHTKEYTIELVAKDCLHRDL 123

Query: 138 TFLVVVLEKREGEVKYFTLEYFEQIKY 163
            F  VV+EK  G     T   FE I Y
Sbjct: 124 PFKTVVIEKINGSYTTLTPVSFEPIFY 126

[Close]

BLAST of HG10018800 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 18  LGLSGSAGIGIG--GAGINLGGGIGIGGGLRR-RSYNPNSEDDDGGNGEEVVVDPSTLVP 77
           LG+ G  GIG G  G  I++GGGIGIGG     +S+NP+ +     N +           
Sbjct: 3   LGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVK----------- 62

Query: 78  TDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERL 137
               +P+V EAA+FAV  FN+ Y+NNL+++YV EAW+  ++ +   Y ++LVA+DC  RL
Sbjct: 63  ----APDVLEAAKFAVDAFNKKYENNLEFQYVTEAWVHEVN-NEKEYSIELVAKDCFHRL 122

Query: 138 LTFLVVVLEKREGEVKYFTLEYFEQI 161
           L F  VV+EK     K + L  FE+I
Sbjct: 123 LEFHAVVIEKTVDHKKIWILVSFERI 132

[Close]

BLAST of HG10018800 vs. NCBI nr
Match: XP_038887120.1 (uncharacterized protein LOC120077305 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-07
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 20  LSGSAGIGIGGAGINLGGGIGIGGGLRRRSYNPNSEDDDGGNGEEVVVDPSTLVPTDPGS 79
           + GS G+G+   GI +GGGI IGGG               G G     +P   VP     
Sbjct: 3   IGGSLGVGLHLPGIGIGGGISIGGGF--------------GLGSGGADEPPKSVPVPTDD 62

Query: 80  PNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERLLTFLV 139
           P++QE  +FAV +FN  Y +NLK++ V++     LD     Y L L A DCL+RLL F  
Sbjct: 63  PSIQELGKFAVEEFNIKYNDNLKFQSVYKYEKFVLDPYATNYNLWLTAIDCLKRLLNFKA 122

Query: 140 VVLEKREGEVKYFTLEYFEQI 161
            V E +       TLE F+ +
Sbjct: 123 RVAEVKVDGTIQLTLESFDPV 129

[Close]

BLAST of HG10018800 vs. NCBI nr
Match: XP_011658840.2 (uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 18  LGLSGSAGIGIG--GAGINLGGGIGIG---GGLRRRSYNPNSEDDDGGNGEEVVVDPSTL 77
           +G+ G  GIGIG  G  +++GGGIGIG   GG   +S++P+ +               + 
Sbjct: 3   IGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGC--KSHDPSKK--------------WSQ 62

Query: 78  VPTDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLE 137
           VP       +   A FAV+ FN+ Y N L +  V EAW+  L      Y ++LVA+DCL 
Sbjct: 63  VPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLN 117

Query: 138 RLLTFLVVVLE 144
           R L F  +V+E
Sbjct: 123 RCLYFHAIVIE 117

[Close]

BLAST of HG10018800 vs. NCBI nr
Match: XP_038887119.1 (uncharacterized protein LOC120077304 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-04
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 75  TDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERL 134
           TD  +P V++ A+FA+ +FN  +  +L+YK V E W + LD    RY L + A DCL RL
Sbjct: 17  TDLETPCVEDNAKFAIEEFNIKHNGSLRYKKVIEGWCKELDESHIRYRLLVQANDCLRRL 76

Query: 135 LTFLVVVLE--KREGEVKYFTLEYFEQ 160
           L F  +V       GE     LE FEQ
Sbjct: 77  LEFEAIVFAHYSENGETTRI-LESFEQ 102

[Close]

BLAST of HG10018800 vs. ExPASy TrEMBL
Match: A0A5D3C980 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001800 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.9e-12
Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 18  LGLSGSAGIGIGGAGINL--GGGIGIGGGLRRRSYNPNSEDDDGGNGEEVVVDPSTLVPT 77
           LG+ G  GIG+   G+N+  GGGIGIGGG         S+D  G   EEV+         
Sbjct: 4   LGIGGGIGIGLRLPGLNISAGGGIGIGGG-------DKSDDPSGWVPEEVI--------- 63

Query: 78  DPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERLL 137
                   +AA++AV KFN+D+ N+LK++YVF+  I  +DV T  Y ++LVA+DCL R L
Sbjct: 64  --------KAAEYAVFKFNKDHGNDLKFQYVFKHSIRQIDVHTKEYTIELVAKDCLHRDL 123

Query: 138 TFLVVVLEKREGEVKYFTLEYFEQIKY 163
            F  VV+EK  G     T   FE I Y
Sbjct: 124 PFKTVVIEKINGSYTTLTPVSFEPIFY 126

[Close]

BLAST of HG10018800 vs. ExPASy TrEMBL
Match: A0A5A7SQL4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001810 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 18  LGLSGSAGIGIG--GAGINLGGGIGIGGGLRR-RSYNPNSEDDDGGNGEEVVVDPSTLVP 77
           LG+ G  GIG G  G  I++GGGIGIGG     +S+NP+ +     N +           
Sbjct: 3   LGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVK----------- 62

Query: 78  TDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERL 137
               +P+V EAA+FAV  FN+ Y+NNL+++YV EAW+  ++ +   Y ++LVA+DC  RL
Sbjct: 63  ----APDVLEAAKFAVDAFNKKYENNLEFQYVTEAWVHEVN-NEKEYSIELVAKDCFHRL 122

Query: 138 LTFLVVVLEKREGEVKYFTLEYFEQI 161
           L F  VV+EK     K + L  FE+I
Sbjct: 123 LEFHAVVIEKTVDHKKIWILVSFERI 132

[Close]

BLAST of HG10018800 vs. ExPASy TrEMBL
Match: E5GCR6 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 18  LGLSGSAGIGIG--GAGINLGGGIGIGGGLRR-RSYNPNSEDDDGGNGEEVVVDPSTLVP 77
           LG+ G  GIG G  G  I++GGGIGIGG     +S+NP+ +     N +           
Sbjct: 3   LGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVK----------- 62

Query: 78  TDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERL 137
               +P+V EAA+FAV  FN+ Y+NNL+++YV EAW+  ++ +   Y ++LVA+DC  RL
Sbjct: 63  ----APDVLEAAKFAVDAFNKKYENNLEFQYVTEAWVHEVN-NEKEYSIELVAKDCFHRL 122

Query: 138 LTFLVVVLEKREGEVKYFTLEYFEQI 161
           L F  VV+EK     K + L  FE+I
Sbjct: 123 LEFHAVVIEKTVDHKKIWILVSFERI 132

[Close]

BLAST of HG10018800 vs. ExPASy TrEMBL
Match: A0A0A0K477 (PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-04
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 5   AGFNLGFGLGGLGLGLSGSAGIGIGGAGINLGGGIGIG---GGLRRRSYNPNSEDDDGGN 64
           A   +  G+GG G+G+    GIG+ G  +++GGGIGIG   GG   +S++P+ +      
Sbjct: 20  AHIKMTIGIGG-GIGI----GIGVPGIKVSIGGGIGIGSRKGGC--KSHDPSKK------ 79

Query: 65  GEEVVVDPSTLVPTDPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRY 124
                    + VP       +   A FAV+ FN+ Y N L +  V EAW+  L      Y
Sbjct: 80  --------WSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEY 139

Query: 125 LLKLVAQDCLERLLTFLVVVLE 144
            ++LVA+DCL R L F  +V+E
Sbjct: 140 SIELVAKDCLNRCLYFHAIVIE 140

[Close]

BLAST of HG10018800 vs. ExPASy TrEMBL
Match: A0A5A7SJV3 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001800 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 16  LGLGLSGSAGIGIGGAGINLGGGIGIGGGLRRRSYNPNSEDDDGGNGEEVVVDPSTLVPT 75
           LG+G   S G+GI G  I++GGGIGI G    R     S D      E   V+       
Sbjct: 3   LGIGGGISIGLGIPGINISIGGGIGIRG----RKGGCKSHDPSKKWTEIKSVN------- 62

Query: 76  DPGSPNVQEAAQFAVSKFNEDYKNNLKYKYVFEAWIEPLDVDTNRYLLKLVAQDCLERLL 135
               P + E A+FAV  FN+ + NNL+++ V EAW+         Y ++LVA+DCL R L
Sbjct: 63  ---DPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCL 116

Query: 136 TFLVVVLE 144
            +  VV+E
Sbjct: 123 QYHAVVIE 116

The following BLAST results are available for this feature:

BLAST of HG10018800 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06876.1	2.1e-11	41.50	phloem filament protein [Cucumis melo var. makuwa]	[more]
ADN34264.1	1.0e-10	40.41	phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament...	[more]
XP_038887120.1	3.1e-07	36.17	uncharacterized protein LOC120077305 [Benincasa hispida]	[more]
XP_011658840.2	2.9e-05	35.88	uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
XP_038887119.1	1.9e-04	41.38	uncharacterized protein LOC120077304 [Benincasa hispida]	[more]

BLAST of HG10018800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C980	9.9e-12	41.50	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SQL4	4.9e-11	40.41	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR6	4.9e-11	40.41	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0K477	2.6e-04	34.51	PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV...	[more]
A0A5A7SJV3	3.4e-04	37.50	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of HG10018800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 81..155 e-value: 9.4E-11 score: 41.6
None	No IPR available	GENE3D	3.10.450.10		coord: 69..164 e-value: 3.0E-9 score: 38.8
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 72..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018800.1	HG10018800.1	mRNA