HG10018784 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018784
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionS-locus lectin protein kinase family protein, putative
LocationChr04: 8404779 .. 8406986 (+)
RNA-Seq ExpressionHG10018784
SyntenyHG10018784
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGGATAGGGACGTCTCCATCGTCAGAGGGGTTAGCGTTCCTTTCTTCCCTTCTCATATTAACGGCGTCTATCATGTGGCTGATATCGCCGATGACGATTTTCTGAGGTACTTGACTCAACCATTTGATGAGATACATGTCGTTGAGGTCCTCTATGGACCAGGGATCGACTGGATTCGTACAAAAGGCGTGGCGATGCGTCTTAGAGGGACAAATTTAACTGTCTCTAATCAGATTTGGCACACATACATTTGCGCTAGATTGATGCCCGTCACCATCTTGCCAAGGTGACAAGGATAGGGCAGAACTAGTCTACTGTCTTAGCTTAGGTGTTCCATCAACGTCGAGAATGTAGGATCGGTATGGCAACCCTAGAGGGGTGAATAGAGTTTTTTAAACTAATTAAAACTTTTTACTTAATGTGGGCCCAATTAAACAAATTAATGCACTTTATACTAACAAGTAATTTAAACAAGGATTTTAGGCAAATAAATTCAATCCAAAATAACCAAGAAATTAAAATTAACACTTTCAAGCACCCTATTAAATTCTAATAATAAGACTGGTAAAAGATATGCAAATTTAAGAACTACCAATCAAAGTAAACAAATATGACCAATTAATTTCAACAAATAAATTTTGCAATTAATTTCATGCAATAAAATATAATAACAAATTAATTGCAAAAATAAATATGAGAGGGATAGAGAAATTGACATCGAGAATTTTATAGTAGTTCCACACAACCGGCCTACATCCACTTCCCAAGATCCTCTTGAGTATGCTTAGAGTCGAACCGTTACAACGTTCCTTTTTCAGGCGCAAGAACAAACCCGATCCTTTCCACAATTGAAGATCAAACCGTTACAGTAACTCTTTTTTCAAGATCAAGAGCAACCCTTACAAAAGTTTGGAAATGAAGAATAAGATAAGAAAAACTCTCTCAAAGAGTAGATTTACAAATTTGTAGCACTCAACAAATCAATTCTCACAATACAATAAATCTCTCTCAAAAATTAGATGAAAAGAATAAAATTGAAGCATGGAGAGAGAGCAACAATGGAAGCTTAATGAATTATGGAGGATTGTAAAAAGATGTAAAAATGTTTTGAAAATTTAGAGAAGATAAAGAGTTTAAAAAGAGATGAGGTAAGTGAAAACTAAATTCAATTAGATCTTGAAAAAGAAAAATCAATGGTAGAGATTTTTCTTCTTTTTGTATCAACTAGCCGTTAGACACAAATAAAAAATAATATAATAATATATATCATTTTCTAAAATATTTTTTTTTAAAAATCCAACAAAAATTAAAAGCCGACCATGTGTCCAAAACTAGTCGTTAGACACAAACATAAAATAATATTAAATTCATTTTCTTTTTAAAATCCTTTTCTTTTTAAAACAAATCCAAAAATCAAAAGCTGCATGTGTCACTTATCTATTGTTCCACTTGTCATCCTCTAGTACGTCTACTTTGACGATTTGGCTGTCACGTCATCGACATCGGGTATTTTTCCGTTAAGCTTGTTTCGATCATATCTTTTTTGTTTGAACTCCGATTTGAGTAATTCAAATTGCGTTGGAACCGTTGTTCCAAGCTCTACACAGTAGATACTTCAAAACACTCAAATTATTAAAAAAAATAAAAGCAGATTTGTTATCATCAAAATATTAATTAATTAATTAATTAAAATTAATTAATTTGAGATTAATGGTCAAAAAGCCAACAGGGAAAGTCATTCATGACTCCATTTGACATTGTGAACGTTTAGCCACCACTAGAGGTTTTGGCATTCGTGTTTGATCACGGAGCTTTGCCGATTGTCAAGTGTAGAGATAGAAGACCGTGAGAAGAGGGTTAGTCCTAAAGGCCCTATTTTTAGGACGACCATCTCTGCCTTCCGAGGTCACGATGATGAGGAGCACCACAAAGAAGAAAATCAAGAGAAGAAAGCTCTTGGCGATGATGTGCAGGACCACCCTAATGTAGAGGTGGAGGTAGCGAAGGAATCTTTAGGTCTGAGAGCTCTTAGGATTACCAAGGAGGCCTTGAGCGGGAGTCGGTATTCGGCTCGCCGTGTGAGGCGTATTGAGAGGAGCATTAACTTTATTAGTGAAAGAGACCACCTCTATTACGCCAGCATAGGTTTCCAGTATGACATCTGGAGAGACCTAAACTCACCGAATTCGGATGAACATTAG

mRNA sequence

ATGAAGGAGGATAGGGACGTCTCCATCGTCAGAGGGGTTAGCGTTCCTTTCTTCCCTTCTCATATTAACGGCGTCTATCATGTGGCTGATATCGCCGATGACGATTTTCTGAGGTACTTGACTCAACCATTTGATGAGATACATGTCGTTGAGGTCCTCTATGGACCAGGGATCGACTGGATTCGTACAAAAGGCGTGGCGATGCGTCTTAGAGGGACAAATTTAACTGTCTCTAATCAGATTTGGCACACATACATTTGCGCTAGATTGATGCCCGTCACCATCTTGCCAAGTGTAGAGATAGAAGACCGTGAGAAGAGGGTTAGTCCTAAAGGCCCTATTTTTAGGACGACCATCTCTGCCTTCCGAGGTCACGATGATGAGGAGCACCACAAAGAAGAAAATCAAGAGAAGAAAGCTCTTGGCGATGATGTGCAGGACCACCCTAATGTAGAGGTGGAGGTAGCGAAGGAATCTTTAGGTCTGAGAGCTCTTAGGATTACCAAGGAGGCCTTGAGCGGGAGTCGGTATTCGGCTCGCCGTGTGAGGCGTATTGAGAGGAGCATTAACTTTATTAGTGAAAGAGACCACCTCTATTACGCCAGCATAGGTTTCCAGTATGACATCTGGAGAGACCTAAACTCACCGAATTCGGATGAACATTAG

Coding sequence (CDS)

ATGAAGGAGGATAGGGACGTCTCCATCGTCAGAGGGGTTAGCGTTCCTTTCTTCCCTTCTCATATTAACGGCGTCTATCATGTGGCTGATATCGCCGATGACGATTTTCTGAGGTACTTGACTCAACCATTTGATGAGATACATGTCGTTGAGGTCCTCTATGGACCAGGGATCGACTGGATTCGTACAAAAGGCGTGGCGATGCGTCTTAGAGGGACAAATTTAACTGTCTCTAATCAGATTTGGCACACATACATTTGCGCTAGATTGATGCCCGTCACCATCTTGCCAAGTGTAGAGATAGAAGACCGTGAGAAGAGGGTTAGTCCTAAAGGCCCTATTTTTAGGACGACCATCTCTGCCTTCCGAGGTCACGATGATGAGGAGCACCACAAAGAAGAAAATCAAGAGAAGAAAGCTCTTGGCGATGATGTGCAGGACCACCCTAATGTAGAGGTGGAGGTAGCGAAGGAATCTTTAGGTCTGAGAGCTCTTAGGATTACCAAGGAGGCCTTGAGCGGGAGTCGGTATTCGGCTCGCCGTGTGAGGCGTATTGAGAGGAGCATTAACTTTATTAGTGAAAGAGACCACCTCTATTACGCCAGCATAGGTTTCCAGTATGACATCTGGAGAGACCTAAACTCACCGAATTCGGATGAACATTAG

Protein sequence

MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDWIRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIEDREKRVSPKGPIFRTTISAFRGHDDEEHHKEENQEKKALGDDVQDHPNVEVEVAKESLGLRALRITKEALSGSRYSARRVRRIERSINFISERDHLYYASIGFQYDIWRDLNSPNSDEH
Homology
[Close]
BLAST of HG10018784 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M E    S VRG  V F    IN  YH+ +   D++  Y ++  D   ++  L  PG +W
Sbjct: 89  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYASEHVDVHQIIRELCQPGAEW 148

Query: 61  IRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIE 103
           I   G  +R + +NLTVSNQ+WH +ICA+L+PV    SV  E
Sbjct: 149 IINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKE 190

[Close]
BLAST of HG10018784 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M E    S VRG  V F    IN  YH+ +   D++  Y ++  D   ++  L  PG +W
Sbjct: 27  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYASEHVDVHQIIRELCQPGAEW 86

Query: 61  IRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIE 103
           I   G  +R + +NLTVSNQ+WH +ICA+L+PV    SV  E
Sbjct: 87  IINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKE 128

[Close]
BLAST of HG10018784 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M E    S VRG  V F    IN  YH+ +   D++  Y ++  D   ++  L  PG +W
Sbjct: 89  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYDIYASEHVDVHQIIRELCQPGAEW 148

Query: 61  IRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIE 103
           +   G  +R + +NLTVSNQ+WH +ICA+L+PV    SV  E
Sbjct: 149 VINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKE 190

[Close]
BLAST of HG10018784 vs. NCBI nr
Match: TYK04780.1 (hypothetical protein E5676_scaffold68G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-07
Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M EDRD   ++G  V F    IN V+ + DI  D+++ ++ +  D   +++ LYGPG +W
Sbjct: 122 MDEDRDSRTIQGCLVSFNAKPINHVFCLLDIERDEYIDFIRREMDVTSIIKALYGPGANW 181

Query: 61  IRTKGVAM-RLRGTN-----LTVSNQIWHTYICARLMPVTILPSVEIEDREKRVSPKGPI 120
           + T+ + + R +G       L + +    T +C R         VE +  E+ + P   +
Sbjct: 182 VDTRHLPLKRYKGEGMLLCALAIGHPSLITKLCRRAW-------VEFDLNEEMIPPNSVL 241

Query: 121 FRTTISAFRGHDDEEHHKEENQEKKALGDDVQD 148
            R++IS+ +G      H E  Q +  +G+  +D
Sbjct: 242 NRSSISSIKG------HMENVQLRNPIGEGRED 261

[Close]
BLAST of HG10018784 vs. NCBI nr
Match: EOY12720.1 (S-locus lectin protein kinase family protein, putative [Theobroma cacao])

HSP 1 Score: 55.5 bits (132), Expect = 7.0e-04
Identity = 26/98 (26.53%), Postives = 47/98 (47.96%), Query Frame = 0 

Query: 2    KEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDWI 61
            + +  V+  RG  VPF    IN   ++  I +D++  Y     +   V+  LY PG  W 
Sbjct: 954  EHENRVTFCRGKKVPFDSFTINQFSNIPKIENDEYAHYTDGNVNLDEVITFLYDPGTQWK 1013

Query: 62   RTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSV 100
             +KG+++  +   L    +IW+  + A++ P+  L  V
Sbjct: 1014 ISKGISVSFKANTLDKFFKIWYHILTAKMFPIKDLSDV 1051

[Close]
BLAST of HG10018784 vs. ExPASy TrEMBL
Match: A0A5D3BBY3 (Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00020 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M E    S VRG  V F    IN  YH+ +   D++  Y ++  D   ++  L  PG +W
Sbjct: 89  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYASEHVDVHQIIRELCQPGAEW 148

Query: 61  IRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIE 103
           I   G  +R + +NLTVSNQ+WH +ICA+L+PV    SV  E
Sbjct: 149 IINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKE 190

[Close]
BLAST of HG10018784 vs. ExPASy TrEMBL
Match: A0A1S3C7Y0 (uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M E    S VRG  V F    IN  YH+ +   D++  Y ++  D   ++  L  PG +W
Sbjct: 27  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYASEHVDVHQIIRELCQPGAEW 86

Query: 61  IRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIE 103
           I   G  +R + +NLTVSNQ+WH +ICA+L+PV    SV  E
Sbjct: 87  IINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKE 128

[Close]
BLAST of HG10018784 vs. ExPASy TrEMBL
Match: A0A0A0KER1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.7e-12
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M E    S VRG  V F    IN  YH+ +   D++  Y ++  D   ++  L  PG +W
Sbjct: 89  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYDIYASEHVDVHQIIRELCQPGAEW 148

Query: 61  IRTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSVEIE 103
           +   G  +R + +NLTVSNQ+WH +ICA+L+PV    SV  E
Sbjct: 149 VINPGEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKE 190

[Close]
BLAST of HG10018784 vs. ExPASy TrEMBL
Match: A0A5D3C077 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00970 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-08
Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 0 

Query: 1   MKEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDW 60
           M EDRD   ++G  V F    IN V+ + DI  D+++ ++ +  D   +++ LYGPG +W
Sbjct: 122 MDEDRDSRTIQGCLVSFNAKPINHVFCLLDIERDEYIDFIRREMDVTSIIKALYGPGANW 181

Query: 61  IRTKGVAM-RLRGTN-----LTVSNQIWHTYICARLMPVTILPSVEIEDREKRVSPKGPI 120
           + T+ + + R +G       L + +    T +C R         VE +  E+ + P   +
Sbjct: 182 VDTRHLPLKRYKGEGMLLCALAIGHPSLITKLCRRAW-------VEFDLNEEMIPPNSVL 241

Query: 121 FRTTISAFRGHDDEEHHKEENQEKKALGDDVQD 148
            R++IS+ +G      H E  Q +  +G+  +D
Sbjct: 242 NRSSISSIKG------HMENVQLRNPIGEGRED 261

[Close]
BLAST of HG10018784 vs. ExPASy TrEMBL
Match: A0A061F5W4 (S-locus lectin protein kinase family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_046867 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 26/98 (26.53%), Postives = 47/98 (47.96%), Query Frame = 0 

Query: 2    KEDRDVSIVRGVSVPFFPSHINGVYHVADIADDDFLRYLTQPFDEIHVVEVLYGPGIDWI 61
            + +  V+  RG  VPF    IN   ++  I +D++  Y     +   V+  LY PG  W 
Sbjct: 954  EHENRVTFCRGKKVPFDSFTINQFSNIPKIENDEYAHYTDGNVNLDEVITFLYDPGTQWK 1013

Query: 62   RTKGVAMRLRGTNLTVSNQIWHTYICARLMPVTILPSV 100
             +KG+++  +   L    +IW+  + A++ P+  L  V
Sbjct: 1014 ISKGISVSFKANTLDKFFKIWYHILTAKMFPIKDLSDV 1051

The following BLAST results are available for this feature:
BLAST of HG10018784 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033353.14.1e-1239.22putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
XP_008458668.14.1e-1239.22PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo][more]
KGN46897.11.2e-1138.24hypothetical protein Csa_020731 [Cucumis sativus][more]
TYK04780.11.8e-0726.80hypothetical protein E5676_scaffold68G00970 [Cucumis melo var. makuwa][more]
EOY12720.17.0e-0426.53S-locus lectin protein kinase family protein, putative [Theobroma cacao][more]
BLAST of HG10018784 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10018784 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BBY32.0e-1239.22Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuw... [more]
A0A1S3C7Y02.0e-1239.22uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=... [more]
A0A0A0KER15.7e-1238.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1[more]
A0A5D3C0778.6e-0826.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A061F5W43.4e-0426.53S-locus lectin protein kinase family protein, putative OS=Theobroma cacao OX=364... [more]
BLAST of HG10018784 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018784.1HG10018784.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0016301 kinase activity