HG10018777 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018777
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type domain-containing protein
Location	Chr04: 8302535 .. 8303020 (-)
RNA-Seq Expression	HG10018777
Synteny	HG10018777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGGCGGAACAAATCTTTGATATTTGTAGGAATGGTCCTTATGTTGGTATGTCACTTGAAATTAGAGATTCCATCATAAGTTGCAAACCACGAAGACATATTCGAACTCGACGAAACTCATCAATATTTGTCAAACAAATCAACCTGAATTTCAAAGTTCAACTCAAATGCAGTCGCTACCAAATAGGTGAAGAAGGCAATAGAAATACAACTTTACTCGGTGAACACACAACTTCTGAATATCCCCTTGCAAATTACCGACTTCCTGTCTCTATCTTCAAGCGTCACGACAAAACTTTGGAGCAATATCTTTTTCACCAGTTTCAGATATATCGAGACTTCATCAACATCAAACTTGTGGCTGACAAAATAATACAACATTGGGTTAGAAAAGTCGAAGAAGAAGAAGAGAATGATTTTAATAATATATTTCAAAAGATTTATCCTCTCGAAATTACGTTAGAGATGTTGATTTTTTAA

mRNA sequence

ATGTCAATGGCGGAACAAATCTTTGATATTTGTAGGAATGGTCCTTATGTTGGTATGTCACTTGAAATTAGAGATTCCATCATAAGTTGCAAACCACGAAGACATATTCGAACTCGACGAAACTCATCAATATTTGTCAAACAAATCAACCTGAATTTCAAAGTTCAACTCAAATGCAGTCGCTACCAAATAGGTGAAGAAGGCAATAGAAATACAACTTTACTCGGTGAACACACAACTTCTGAATATCCCCTTGCAAATTACCGACTTCCTGTCTCTATCTTCAAGCGTCACGACAAAACTTTGGAGCAATATCTTTTTCACCAGTTTCAGATATATCGAGACTTCATCAACATCAAACTTGTGGCTGACAAAATAATACAACATTGGGTTAGAAAAGTCGAAGAAGAAGAAGAGAATGATTTTAATAATATATTTCAAAAGATTTATCCTCTCGAAATTACGTTAGAGATGTTGATTTTTTAA

Coding sequence (CDS)

ATGTCAATGGCGGAACAAATCTTTGATATTTGTAGGAATGGTCCTTATGTTGGTATGTCACTTGAAATTAGAGATTCCATCATAAGTTGCAAACCACGAAGACATATTCGAACTCGACGAAACTCATCAATATTTGTCAAACAAATCAACCTGAATTTCAAAGTTCAACTCAAATGCAGTCGCTACCAAATAGGTGAAGAAGGCAATAGAAATACAACTTTACTCGGTGAACACACAACTTCTGAATATCCCCTTGCAAATTACCGACTTCCTGTCTCTATCTTCAAGCGTCACGACAAAACTTTGGAGCAATATCTTTTTCACCAGTTTCAGATATATCGAGACTTCATCAACATCAAACTTGTGGCTGACAAAATAATACAACATTGGGTTAGAAAAGTCGAAGAAGAAGAAGAGAATGATTTTAATAATATATTTCAAAAGATTTATCCTCTCGAAATTACGTTAGAGATGTTGATTTTTTAA

Protein sequence

MSMAEQIFDICRNGPYVGMSLEIRDSIISCKPRRHIRTRRNSSIFVKQINLNFKVQLKCSRYQIGEEGNRNTTLLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINIKLVADKIIQHWVRKVEEEEENDFNNIFQKIYPLEITLEMLIF

Homology

[Close]

BLAST of HG10018777 vs. NCBI nr
Match: KAA0031411.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-47
Identity = 107/168 (63.69%), Postives = 131/168 (77.98%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MA QIF+ICRN P+VGMSLEI DSI S  + R+ IRTR+NSS +V+ I+LNFKVQLKCS 
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 63  YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINIK 122
           + + E+G   TT  L EHT+  +PLA Y+LP+SIFK  DK LEQYLFH+F +YR+FINI 
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINIT 120

Query: 123 LVADKIIQHWVRKVEE-----EEEN---DFNNIFQKIYPLEITLEMLI 161
           LVAD++IQHWV++VEE     +EEN   DF N+FQKIYPLEITLEM I
Sbjct: 121 LVADRLIQHWVKRVEEDDHEYQEENNNHDF-NVFQKIYPLEITLEMQI 167

[Close]

BLAST of HG10018777 vs. NCBI nr
Match: TYK06862.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 6.3e-47
Identity = 106/168 (63.10%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MA QIF+ICRN P+VGMSLEI DSI S  + R+ IRTR+NSS +V+ I+LNFKVQLKCS 
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 63  YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINIK 122
           + + E+G   TT  L EHT+  +PLA Y+LP+SIFK  DK LEQYLFH+F +YR+FIN  
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINTT 120

Query: 123 LVADKIIQHWVRKVEE-----EEEN---DFNNIFQKIYPLEITLEMLI 161
           LVAD++IQHWV++VEE     +EEN   DF N+FQKIYPLEITLEM I
Sbjct: 121 LVADRLIQHWVKRVEEDDHEHQEENNNHDF-NVFQKIYPLEITLEMRI 167

[Close]

BLAST of HG10018777 vs. NCBI nr
Match: KAA0044491.1 (putative zinc finger protein [Cucumis melo var. makuwa] >TYK29618.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 4.7e-42
Identity = 95/162 (58.64%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISCKPRRHIRTRRNSSIFVKQINLNFKVQLKCSRY 62
           MAE+I D CR G Y+GMSL I D ++  +PR  IRTRRNS  FVK+++LNFK+QLKC  +
Sbjct: 1   MAEEIIDTCRYGYYMGMSLRIIDPVLRRQPRNQIRTRRNSPTFVKRMDLNFKLQLKCQHF 60

Query: 63  QIGE-EGNRN-TTLLGEHTTSEYPLANYRL-PVSIFKRHDKTLEQYLFHQFQIYRDFINI 122
           QI E EGN N TTLL EH +S++ LA   L P+SIFK  D+TL++ LF +FQ+YRD INI
Sbjct: 61  QICEIEGNTNTTTLLSEHISSQHALATLELIPISIFKHGDRTLKRLLFLEFQMYRDIINI 120

Query: 123 KLVADKIIQHWVRKVEEEEENDFNNIFQKIYPLEITLEMLIF 162
           +LV DKII HWV K+EE++EN    +F+KIYPLEI LE+++F
Sbjct: 121 ELVVDKIINHWVNKIEEDQENSC-RVFRKIYPLEIVLELVVF 161

[Close]

BLAST of HG10018777 vs. NCBI nr
Match: XP_011659722.2 (uncharacterized protein LOC105436242 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 5.7e-40
Identity = 98/169 (57.99%), Postives = 124/169 (73.37%), Query Frame = 0


Query: 2   SMAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCS 61
           SMA QIFD+C N P+VGMSL+I+DSI S  + R+ IRTRRNSS +V+ I+LNFKVQL+C+
Sbjct: 15  SMAAQIFDMCMNRPFVGMSLKIKDSITSLHRTRKRIRTRRNSSKYVEHIDLNFKVQLRCT 74

Query: 62  R-YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFIN 121
              Q  E+G   TT  L EHT+S +PLA Y+LP+SIFK  + TLEQYL  +   +R+ I+
Sbjct: 75  HVLQEYEDGIMTTTSFLHEHTSSSHPLATYQLPISIFKNGNSTLEQYLCDRLHAHRELID 134

Query: 122 IKLVADKIIQHWVRKVE-------EEEENDFNNIFQKIYPLEITLEMLI 161
           I LVAD+IIQHWV+KVE       EEE N+  N+FQKI+ LEITLEM I
Sbjct: 135 ITLVADRIIQHWVKKVEEDDCDHDEEENNEDFNVFQKIHSLEITLEMKI 183

[Close]

BLAST of HG10018777 vs. NCBI nr
Match: KGN43806.1 (hypothetical protein Csa_017341 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-39
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MA QIFD+C N P+VGMSL+I+DSI S  + R+ IRTRRNSS +V+ I+LNFKVQL+C+ 
Sbjct: 1   MAAQIFDMCMNRPFVGMSLKIKDSITSLHRTRKRIRTRRNSSKYVEHIDLNFKVQLRCTH 60

Query: 63  -YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINI 122
             Q  E+G   TT  L EHT+S +PLA Y+LP+SIFK  + TLEQYL  +   +R+ I+I
Sbjct: 61  VLQEYEDGIMTTTSFLHEHTSSSHPLATYQLPISIFKNGNSTLEQYLCDRLHAHRELIDI 120

Query: 123 KLVADKIIQHWVRKVE-------EEEENDFNNIFQKIYPLEITLEMLI 161
            LVAD+IIQHWV+KVE       EEE N+  N+FQKI+ LEITLEM I
Sbjct: 121 TLVADRIIQHWVKKVEEDDCDHDEEENNEDFNVFQKIHSLEITLEMKI 168

[Close]

BLAST of HG10018777 vs. ExPASy TrEMBL
Match: A0A5A7SPE2 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001670 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.1e-48
Identity = 107/168 (63.69%), Postives = 131/168 (77.98%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MA QIF+ICRN P+VGMSLEI DSI S  + R+ IRTR+NSS +V+ I+LNFKVQLKCS 
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 63  YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINIK 122
           + + E+G   TT  L EHT+  +PLA Y+LP+SIFK  DK LEQYLFH+F +YR+FINI 
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINIT 120

Query: 123 LVADKIIQHWVRKVEE-----EEEN---DFNNIFQKIYPLEITLEMLI 161
           LVAD++IQHWV++VEE     +EEN   DF N+FQKIYPLEITLEM I
Sbjct: 121 LVADRLIQHWVKRVEEDDHEYQEENNNHDF-NVFQKIYPLEITLEMQI 167

[Close]

BLAST of HG10018777 vs. ExPASy TrEMBL
Match: A0A5D3C6D9 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001660 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.1e-47
Identity = 106/168 (63.10%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MA QIF+ICRN P+VGMSLEI DSI S  + R+ IRTR+NSS +V+ I+LNFKVQLKCS 
Sbjct: 1   MAAQIFNICRNRPFVGMSLEINDSITSMNRTRKRIRTRQNSSKYVQHIDLNFKVQLKCSH 60

Query: 63  YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINIK 122
           + + E+G   TT  L EHT+  +PLA Y+LP+SIFK  DK LEQYLFH+F +YR+FIN  
Sbjct: 61  FLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQYLFHKFHVYREFINTT 120

Query: 123 LVADKIIQHWVRKVEE-----EEEN---DFNNIFQKIYPLEITLEMLI 161
           LVAD++IQHWV++VEE     +EEN   DF N+FQKIYPLEITLEM I
Sbjct: 121 LVADRLIQHWVKRVEEDDHEHQEENNNHDF-NVFQKIYPLEITLEMRI 167

[Close]

BLAST of HG10018777 vs. ExPASy TrEMBL
Match: A0A5D3E1H7 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002290 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.3e-42
Identity = 95/162 (58.64%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISCKPRRHIRTRRNSSIFVKQINLNFKVQLKCSRY 62
           MAE+I D CR G Y+GMSL I D ++  +PR  IRTRRNS  FVK+++LNFK+QLKC  +
Sbjct: 1   MAEEIIDTCRYGYYMGMSLRIIDPVLRRQPRNQIRTRRNSPTFVKRMDLNFKLQLKCQHF 60

Query: 63  QIGE-EGNRN-TTLLGEHTTSEYPLANYRL-PVSIFKRHDKTLEQYLFHQFQIYRDFINI 122
           QI E EGN N TTLL EH +S++ LA   L P+SIFK  D+TL++ LF +FQ+YRD INI
Sbjct: 61  QICEIEGNTNTTTLLSEHISSQHALATLELIPISIFKHGDRTLKRLLFLEFQMYRDIINI 120

Query: 123 KLVADKIIQHWVRKVEEEEENDFNNIFQKIYPLEITLEMLIF 162
           +LV DKII HWV K+EE++EN    +F+KIYPLEI LE+++F
Sbjct: 121 ELVVDKIINHWVNKIEEDQENSC-RVFRKIYPLEIVLELVVF 161

[Close]

BLAST of HG10018777 vs. ExPASy TrEMBL
Match: A0A0A0K7L5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G068590 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIISC-KPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MA QIFD+C N P+VGMSL+I+DSI S  + R+ IRTRRNSS +V+ I+LNFKVQL+C+ 
Sbjct: 1   MAAQIFDMCMNRPFVGMSLKIKDSITSLHRTRKRIRTRRNSSKYVEHIDLNFKVQLRCTH 60

Query: 63  -YQIGEEGNRNTT-LLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINI 122
             Q  E+G   TT  L EHT+S +PLA Y+LP+SIFK  + TLEQYL  +   +R+ I+I
Sbjct: 61  VLQEYEDGIMTTTSFLHEHTSSSHPLATYQLPISIFKNGNSTLEQYLCDRLHAHRELIDI 120

Query: 123 KLVADKIIQHWVRKVE-------EEEENDFNNIFQKIYPLEITLEMLI 161
            LVAD+IIQHWV+KVE       EEE N+  N+FQKI+ LEITLEM I
Sbjct: 121 TLVADRIIQHWVKKVEEDDCDHDEEENNEDFNVFQKIHSLEITLEMKI 168

[Close]

BLAST of HG10018777 vs. ExPASy TrEMBL
Match: A0A0A0K2A5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G068580 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 92/165 (55.76%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 3   MAEQIFDICRNGPYVGMSLEIRDSIIS-CKPRRHIRTRRNSSIFVKQINLNFKVQLKCSR 62
           MAE+IFD CR G Y+GM L I D  +   +P+  IRTRRNS  F KQI+LNF+VQLKC  
Sbjct: 1   MAERIFDRCRCGSYMGMKLRICDDPVQRRRPQTQIRTRRNSPTFFKQIDLNFEVQLKCQH 60

Query: 63  YQIGEEGNRN-TTLLGEHTTSEYPLANYRLPVSIFKRHDKTLEQYLFHQFQIYRDFINIK 122
           +QI EE   N TTL+ EH  S++P A +RLP+SI +  DKTL+  LF +F +YRD INI+
Sbjct: 61  FQIREEETSNTTTLIDEHIVSQHPFATFRLPISILEHGDKTLKLLLFREFHMYRDIINIE 120

Query: 123 LVADKIIQHWVRKVEEEEENDFNN----IFQKIYPLEITLEMLIF 162
            + D+II++WV KVEEEEE+  N+    +F+KIY LEITLE+LIF
Sbjct: 121 HLVDEIIKYWVTKVEEEEEDQENSTSSRVFKKIYRLEITLELLIF 165

The following BLAST results are available for this feature:

BLAST of HG10018777 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031411.1	1.7e-47	63.69	putative zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK06862.1	6.3e-47	63.10	putative zinc finger protein [Cucumis melo var. makuwa]	[more]
KAA0044491.1	4.7e-42	58.64	putative zinc finger protein [Cucumis melo var. makuwa] >TYK29618.1 putative zin...	[more]
XP_011659722.2	5.7e-40	57.99	uncharacterized protein LOC105436242 [Cucumis sativus]	[more]
KGN43806.1	2.2e-39	57.74	hypothetical protein Csa_017341 [Cucumis sativus]	[more]

BLAST of HG10018777 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPE2	8.1e-48	63.69	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3C6D9	3.1e-47	63.10	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3E1H7	2.3e-42	58.64	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0K7L5	1.1e-39	57.74	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G068590 P...	[more]
A0A0A0K2A5	1.8e-39	55.76	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G068580 P...	[more]

BLAST of HG10018777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018777.1	HG10018777.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity