HG10018708 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018708
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Zinc finger, LIM-type
Location	Chr04: 7255845 .. 7257391 (+)
RNA-Seq Expression	HG10018708
Synteny	HG10018708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGCTTTACAGGAACCACACAAAAGTGCATGGCTTGTGATAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGGCTTGCTTCCGATGCTACCATTGTAAGGGCACTCTTAAGGTAAACAATATCCATATTTAATCCCTATCTTCTTCTTCTTCAAAAAAAAAAAAAAAAAGTCATTTTGTGTTTTCTTTTTTTTTTTATGTTTGGTGGTATCAAAAGTGGTTTTTAGGCGAGTATCATGAGGAATCATTGAGAACGATTTTGTTTACAATTTTCTCTCCGGGTGAAAATTGTGTTTTGTTTCATTTTTTTCTGGCAAGTATGAAGATCATCATTTTGGAGTGATTTTAAACATGACAAAAGTGATTTTAATCCTTTCAGAAGACCTAACCATTTTATTTCTTAGTTTCTTAAGAAACTAAGCATATATATTTTAATTTTTTATTATAATAATACTTTGATACATAATTATTAGACCAAACTTGATAATAGGGTAAATTTAACAGTCTATTTTTGTATTATTTTCAACTAAAACAATAGTACTAACAATTTTTTTTTTAACAAATAATTTATATTTGTATATTTTGGTTTTGCAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGACCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGCTTTGAAGGCAATTTTTTCTTCTTTTTTTTAATTACAAATCACTCGTCTTTAATTTTTCTATTTTGCAAAATCATACCCTTCTCCTATTTTTCAAAATTATTTCAAACACCCACTTGCAAATTTAGAACATTAAAAAAAAAATTGATAGGGTAATTCTAAAATTGAATATTTTCTTTTCTTCAGGTACTCCAAAAGTCATGAAACCAGAAAAGCCCACCGAAAATGAGGTAATATATATCATTTTATATAATTCTTCCTAAATTATAAAAACTAATTCAATTTTTTTTTTTAAAAAAAACTATTTACTAATGATTTACTAATGATTTGATCTTGCAATGGAACAGAATGCAAAGTCAGTCTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTACTCGCAATCAAAATATTAAAAAATAAATAATTATTTAAATTTTTTGTAATTACTTGGTTTTGGAGCATAACTATAAAGTTTCTACTATCGATCTCGAGATGAAAAAAAAAAAAAAAAAAAAAGAAAAGAAGAAACTCAATTGTAACGGTTGTGTCGGGTTTTTTAGGTAACGGTGAATGGGACGGCGTACCACAAAAGTTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAGCTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACGATTCATCAGTTGGGGCTATGAAAATATCTACTCCAGTGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGACTAGCTTTACAGGAACCACACAAAAGTGCATGGCTTGTGATAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGGCTTGCTTCCGATGCTACCATTGTACTCCAAAAGTCATGAAACCAGAAAAGCCCACCGAAAATGAGAATGCAAAGTCAGTCTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAATGGGACGGCGTACCACAAAAGTTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAGCTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACGATTCATCAGTTGGGGCTATGAAAATATCTACTCCAGTGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGACTAGCTTTACAGGAACCACACAAAAGTGCATGGCTTGTGATAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGGCTTGCTTCCGATGCTACCATTGTACTCCAAAAGTCATGAAACCAGAAAAGCCCACCGAAAATGAGAATGCAAAGTCAGTCTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAATGGGACGGCGTACCACAAAAGTTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAGCTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACGATTCATCAGTTGGGGCTATGAAAATATCTACTCCAGTGGAAATTGCAGCTGAATCATAG

Protein sequence

MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNDSSVGAMKISTPVEIAAES

Homology

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BLAST of HG10018708 vs. NCBI nr
Match: KAA0031371.1 (LIM domain protein GLIM1a [Cucumis melo var. makuwa] >TYK06823.1 LIM domain protein GLIM1a [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 4.1e-78
Identity = 149/201 (74.13%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQKCMAC+KTVYLVDKLTADNRVFHK CFRCYHC                   
Sbjct: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKVCFRCYHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPK+MKPEKP+ENENAKSVSNMFGGTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

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BLAST of HG10018708 vs. NCBI nr
Match: XP_038888760.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 146/200 (73.00%), Postives = 155/200 (77.50%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC                   
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPKV+K +KPTENENAKSVSNMF GTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVVKLDKPTENENAKSVSNMFAGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

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BLAST of HG10018708 vs. NCBI nr
Match: XP_004136935.1 (LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN43845.1 hypothetical protein Csa_017260 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 144/201 (71.64%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF+GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHC                   
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPKVM+ EKP+ENENAKSVSNMFGGTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNG AYHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

[Close]

BLAST of HG10018708 vs. NCBI nr
Match: KAG6571916.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.3 bits (734), Expect = 8.0e-74
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQKCMACDKTVYLVDKLTADNR+FHK CFRCYHC                   
Sbjct: 111 MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 170

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPK+ KPEKPTENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 171 PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 230

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 231 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 290

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BLAST of HG10018708 vs. NCBI nr
Match: XP_022952743.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 8.0e-74
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQKCMACDKTVYLVDKLTADNR+FHK CFRCYHC                   
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPK+ KPEKPTENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

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BLAST of HG10018708 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.3e-60
Identity = 113/175 (64.57%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC--------------------- 62
           +F GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HC                     
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  -----------------TPKVMKPEKPTENEN--AKSVSNMFGGTRDKCSGCTKTVYPIE 122
                            TPK+ KP++P E E      VSNMFGGTR+KC GC KTVYPIE
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 138
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

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BLAST of HG10018708 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-53
Identity = 103/179 (57.54%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SFTGTTQKC  C+KTVYLVDKL A+ RV+HKACFRC+HC                   
Sbjct: 1   MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCR 60

Query: 61  -------------------TPKVMKPEK--PTENENAKSVSNMFGGTRDKCSGCTKTVYP 120
                              TPK  KPE+    E ++A  +S+ F GTRDKC+ C K VYP
Sbjct: 61  HHFDQLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYP 120

Query: 121 IEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 140
           IE+V V+GTAYH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 121 IERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178

[Close]

BLAST of HG10018708 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-42
Identity = 93/199 (46.73%), Postives = 110/199 (55.28%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM---------------- 62
           SFTGT QKC AC+KTVY V+ L+AD   +HKACF+C HC  ++                 
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  -------------------KP--EKPTE--NENAKSVSNMFGGTRDKCSGCTKTVYPIEK 122
                              KP  +KPT   N     ++ MF GT+DKC+ CTKTVYPIEK
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEK 121

Query: 123 VTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKN 163
           VTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L       
Sbjct: 122 VTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 181

[Close]

BLAST of HG10018708 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-41
Identity = 91/198 (45.96%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM-------------KP- 62
           SFTGT QKC AC+KTVY V+ L+AD   +HK+CF+C HC  ++              KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPTENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  + N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKND 163
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

[Close]

BLAST of HG10018708 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.0e-36
Identity = 73/195 (37.44%), Postives = 105/195 (53.85%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM---------------- 62
           SFTGT  KC  CDKTVY+VD L+ +   +HK+CFRC HC   +                 
Sbjct: 2   SFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61

Query: 63  ------------------KPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNG 122
                             K EKP        +S++F GT+DKC+ C KTVYP+EK+ + G
Sbjct: 62  FEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQMEG 121

Query: 123 TAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ-LETERQKNDSSV 163
             +HK+CF+C+HGGCT++ S+Y + +  LYC+HH  QLF EKGNY+  L+    +  +S 
Sbjct: 122 ECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASG 181

[Close]

BLAST of HG10018708 vs. ExPASy TrEMBL
Match: A0A5A7SP97 (LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001270 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.0e-78
Identity = 149/201 (74.13%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQKCMAC+KTVYLVDKLTADNRVFHK CFRCYHC                   
Sbjct: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKVCFRCYHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPK+MKPEKP+ENENAKSVSNMFGGTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of HG10018708 vs. ExPASy TrEMBL
Match: A0A0A0K2E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071340 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75
Identity = 144/201 (71.64%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF+GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHC                   
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPKVM+ EKP+ENENAKSVSNMFGGTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNG AYHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

[Close]

BLAST of HG10018708 vs. ExPASy TrEMBL
Match: A0A6J1GLG2 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111455348 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.9e-74
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQKCMACDKTVYLVDKLTADNR+FHK CFRCYHC                   
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPK+ KPEKPTENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of HG10018708 vs. ExPASy TrEMBL
Match: A0A6J1D4V0 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111017319 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.6e-74
Identity = 145/200 (72.50%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF+GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHC                   
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPKV KPEKPTE ENAKSVSNMFGGTRDKCSGCTKTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKV-KPEKPTETENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHK+CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKTCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

[Close]

BLAST of HG10018708 vs. ExPASy TrEMBL
Match: A0A6J1I4V6 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111471016 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 140/201 (69.65%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MTSFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC------------------- 60
           M SF GTTQ+CMACDKTVYLVDKLTADNR+FHK CFRCYHC                   
Sbjct: 1   MASFVGTTQRCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  -------------------TPKVMKPEKPTENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120
                              TPK+ KPEKPTENENAKSVS+MFGGTRDKC+GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 163
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

[Close]

BLAST of HG10018708 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-61
Identity = 113/175 (64.57%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHC--------------------- 62
           +F GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HC                     
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  -----------------TPKVMKPEKPTENEN--AKSVSNMFGGTRDKCSGCTKTVYPIE 122
                            TPK+ KP++P E E      VSNMFGGTR+KC GC KTVYPIE
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 138
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of HG10018708 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43
Identity = 93/199 (46.73%), Postives = 110/199 (55.28%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM---------------- 62
           SFTGT QKC AC+KTVY V+ L+AD   +HKACF+C HC  ++                 
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  -------------------KP--EKPTE--NENAKSVSNMFGGTRDKCSGCTKTVYPIEK 122
                              KP  +KPT   N     ++ MF GT+DKC+ CTKTVYPIEK
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEK 121

Query: 123 VTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKN 163
           VTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L       
Sbjct: 122 VTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 181

[Close]

BLAST of HG10018708 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42
Identity = 91/198 (45.96%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM-------------KP- 62
           SFTGT QKC AC+KTVY V+ L+AD   +HK+CF+C HC  ++              KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPTENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  + N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKND 163
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

[Close]

BLAST of HG10018708 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42
Identity = 91/198 (45.96%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM-------------KP- 62
           SFTGT QKC AC+KTVY V+ L+AD   +HK+CF+C HC  ++              KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPTENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  + N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKND 163
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

[Close]

BLAST of HG10018708 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42
Identity = 91/198 (45.96%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 3   SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCTPKVM-------------KP- 62
           SFTGT QKC AC+KTVY V+ L+AD   +HK+CF+C HC  ++              KP 
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  ------EKPTENENAKS------------------VSNMFGGTRDKCSGCTKTVYPIEKV 122
                 E  + N+N +S                  V+  F GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKND 163
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

The following BLAST results are available for this feature:

BLAST of HG10018708 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031371.1	4.1e-78	74.13	LIM domain protein GLIM1a [Cucumis melo var. makuwa] >TYK06823.1 LIM domain prot...	[more]
XP_038888760.1	1.7e-76	73.00	LIM domain-containing protein WLIM1-like [Benincasa hispida]	[more]
XP_004136935.1	1.2e-74	71.64	LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN43845.1 hypothetical p...	[more]
KAG6571916.1	8.0e-74	70.15	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022952743.1	8.0e-74	70.15	LIM domain-containing protein WLIM1-like [Cucurbita moschata]	[more]

BLAST of HG10018708 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	2.3e-60	64.57	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	2.8e-53	57.54	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	3.8e-42	46.73	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	5.4e-41	45.96	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q1ECF5	9.0e-36	37.44	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of HG10018708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SP97	2.0e-78	74.13	LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0K2E5	6.0e-75	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071340 PE=4 SV=1	[more]
A0A6J1GLG2	3.9e-74	70.15	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1D4V0	6.6e-74	72.50	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1I4V6	1.1e-73	69.65	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of HG10018708 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.7e-61	64.57	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.7e-43	46.73	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	3.9e-42	45.96	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	3.9e-42	45.96	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	3.9e-42	45.96	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 10..60 e-value: 0.27 score: 3.8 coord: 70..122 e-value: 4.5E-15 score: 66.1
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 71..126 e-value: 5.8E-13 score: 48.9 coord: 11..53 e-value: 1.3E-6 score: 28.5
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 11..45
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 69..129 score: 12.8503
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 66..135 e-value: 3.1E-20 score: 74.1
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 1..60 e-value: 4.1E-11 score: 44.4
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..41
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 42..151
None	No IPR available	PANTHER	PTHR24206:SF35	LIM DOMAIN-CONTAINING PROTEIN WLIM1	coord: 1..41 coord: 42..151
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 71..131 e-value: 3.45382E-39 score: 125.275
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 97..136
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..36
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 63..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018708.1	HG10018708.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding