HG10018634 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018634
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 6090878 .. 6091213 (+)
RNA-Seq Expression	HG10018634
Synteny	HG10018634

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTCTCCAAAGAGAACATGGTTGTAATTTTTATTGGTGTTCTTTTGTTTAGCATCAACTTTGCTGGAATTGCAAGTGCAATTAGATCTATCAATCAAGGTCCACTCGAAGATGAAGTCAATGTTGTATATAGTCCAAGAATTCCTATAAAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATCACTGCAAATCTCTACAAGATTGCCAATATAGGATTCATGGAGATGAAGTAAGAAATATGGTTATTAACACCTCAAAAAAGGTTAAAGGGGATAAAGATATTGTTCGTCCTCTACCATATATTGTTTAA

mRNA sequence

ATGGTTGTCTCCAAAGAGAACATGGTTGTAATTTTTATTGGTGTTCTTTTGTTTAGCATCAACTTTGCTGGAATTGCAAGTGCAATTAGATCTATCAATCAAGGTCCACTCGAAGATGAAGTCAATGTTGTATATAGTCCAAGAATTCCTATAAAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATCACTGCAAATCTCTACAAGATTGCCAATATAGGATTCATGGAGATGAAGTAAGAAATATGGTTATTAACACCTCAAAAAAGGTTAAAGGGGATAAAGATATTGTTCGTCCTCTACCATATATTGTTTAA

Coding sequence (CDS)

ATGGTTGTCTCCAAAGAGAACATGGTTGTAATTTTTATTGGTGTTCTTTTGTTTAGCATCAACTTTGCTGGAATTGCAAGTGCAATTAGATCTATCAATCAAGGTCCACTCGAAGATGAAGTCAATGTTGTATATAGTCCAAGAATTCCTATAAAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATCACTGCAAATCTCTACAAGATTGCCAATATAGGATTCATGGAGATGAAGTAAGAAATATGGTTATTAACACCTCAAAAAAGGTTAAAGGGGATAAAGATATTGTTCGTCCTCTACCATATATTGTTTAA

Protein sequence

MVVSKENMVVIFIGVLLFSINFAGIASAIRSINQGPLEDEVNVVYSPRIPIKLHDDANQYVSRRNNPIDHCKSLQDCQYRIHGDEVRNMVINTSKKVKGDKDIVRPLPYIV

Homology

[Close]

BLAST of HG10018634 vs. NCBI nr
Match: KAE8646140.1 (hypothetical protein Csa_015664 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-13
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MVVSKENMVVIFIGVLLFSINFAGIASAIRSINQGPLEDEVNVVYSP---RIPIKLHDDA 60
           MVVSK+NM V FIG+LLFSINF  IASA R I + P ED   VV  P    I  +L DDA
Sbjct: 1   MVVSKKNMAV-FIGILLFSINFVEIASAARPIKRRPYEDNTKVVCGPPRRSIDFELDDDA 60

Query: 61  NQYVSRRNNPIDHCKSLQDCQYRIHGDEVRNMV-INTSKKVKGDKDIVRPLPYIV 112
            +Y S  N  +  CKSL+  ++ I+ D+V N   +NTS+ VKGDKD     P+IV
Sbjct: 61  QKYASWYNT-VYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]

BLAST of HG10018634 vs. NCBI nr
Match: KGN44636.2 (hypothetical protein Csa_016656 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   MVVSKENMVVIFIGVLLFSINFAGIASAIRSINQGPLEDEVNVVYSP---RIPIKLHDDA 60
           MVVSK+NM V FIG+LLFSINF  IASA R I +    D   VV  P    I  +L DDA
Sbjct: 1   MVVSKKNMAV-FIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDA 60

Query: 61  NQYVSRRNNPIDHCKSLQDCQYRIHGDEVRNMV-INTSKKVKGDKDIVRPLPYIV 112
            +Y S  N  +  CKSL+  ++ I+GD+V N   +NTS+ VKGDKD     P+IV
Sbjct: 61  QKYASWYNT-VYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]

BLAST of HG10018634 vs. ExPASy TrEMBL
Match: A0A0A0K605 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.9e-13
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   MVVSKENMVVIFIGVLLFSINFAGIASAIRSINQGPLEDEVNVVYSP---RIPIKLHDDA 60
           MVVSK+NM V FIG+LLFSINF  IASA R I +    D   VV  P    I  +L DDA
Sbjct: 1   MVVSKKNMAV-FIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDA 60

Query: 61  NQYVSRRNNPIDHCKSLQDCQYRIHGDEVRNMV-INTSKKVKGDKDIVRPLPYIV 112
            +Y S  N  +  CKSL+  ++ I+GD+V N   +NTS+ VKGDKD     P+IV
Sbjct: 61  QKYASWYNT-VYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]

BLAST of HG10018634 vs. ExPASy TrEMBL
Match: A0A0A0K3T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.4e-12
Identity = 56/115 (48.70%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   MVVSKENMVVIFIGVLLFSINFAGIASAIRSINQGPLEDEVNVVYSP---RIPIKLHDDA 60
           MVVSK+NM V FIG+LLFSINF  IASA R I +    D   VV  P    I  +L DDA
Sbjct: 1   MVVSKKNMAV-FIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDA 60

Query: 61  NQYVSRRNNPIDHCKSLQDCQYRIHGDEVRNMV-INTSKKVKGDKDIVRPLPYIV 112
            +Y S  N  +  CKSL+  ++ I+ D+V N   +NTS+ VKGDKD     P+IV
Sbjct: 61  QKYASWYNT-VYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKD-----PHIV 108

The following BLAST results are available for this feature:

BLAST of HG10018634 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646140.1	3.2e-13	50.43	hypothetical protein Csa_015664 [Cucumis sativus]	[more]
KGN44636.2	2.0e-12	49.57	hypothetical protein Csa_016656 [Cucumis sativus]	[more]

BLAST of HG10018634 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018634 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K605	9.9e-13	49.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1	[more]
A0A0A0K3T5	8.4e-12	48.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1	[more]

BLAST of HG10018634 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018634.1	HG10018634.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0051179	localization
cellular_component	GO:0110165	cellular anatomical entity