HG10018632 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018632
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 6077431 .. 6077751 (+)
RNA-Seq ExpressionHG10018632
SyntenyHG10018632
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTTCCAAAGAGAACATGGTTATTTTTATTGGTGTGCTTTTGTTTAGCATGAACTTTGTTAAAATTGCAAATACAATTAGATCTATCAATCAAGTTCCTCTTGAAGATGAAGCCAATGTTGTATATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGCAAGAGGGAACAATCCAATTGATCACTGCAAATCTCTACAAGACTATCAAGATAGGATTCATGGAGATGAAGTAAGAAATATGGTTGTTCACACCTCAAAAAAGGTTAAAGGGAATAAAGATATCGTTCGTCCTCTACCATAG

mRNA sequence

ATGGTTGTTTCCAAAGAGAACATGGTTATTTTTATTGGTGTGCTTTTGTTTAGCATGAACTTTGTTAAAATTGCAAATACAATTAGATCTATCAATCAAGTTCCTCTTGAAGATGAAGCCAATGTTGTATATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGCAAGAGGGAACAATCCAATTGATCACTGCAAATCTCTACAAGACTATCAAGATAGGATTCATGGAGATGAAGTAAGAAATATGGTTGTTCACACCTCAAAAAAGGTTAAAGGGAATAAAGATATCGTTCGTCCTCTACCATAG

Coding sequence (CDS)

ATGGTTGTTTCCAAAGAGAACATGGTTATTTTTATTGGTGTGCTTTTGTTTAGCATGAACTTTGTTAAAATTGCAAATACAATTAGATCTATCAATCAAGTTCCTCTTGAAGATGAAGCCAATGTTGTATATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGCAAGAGGGAACAATCCAATTGATCACTGCAAATCTCTACAAGACTATCAAGATAGGATTCATGGAGATGAAGTAAGAAATATGGTTGTTCACACCTCAAAAAAGGTTAAAGGGAATAAAGATATCGTTCGTCCTCTACCATAG

Protein sequence

MVVSKENMVIFIGVLLFSMNFVKIANTIRSINQVPLEDEANVVYSPRVPIELHDDANQYARGNNPIDHCKSLQDYQDRIHGDEVRNMVVHTSKKVKGNKDIVRPLP
Homology
[Close]
BLAST of HG10018632 vs. NCBI nr
Match: KAE8646140.1 (hypothetical protein Csa_015664 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 0 

Query: 1   MVVSKENMVIFIGVLLFSMNFVKIANTIRSINQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+NM +FIG+LLFS+NFV+IA+  R I + P ED   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRPYEDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARGNNPIDHCKSLQDYQDRIHGDEVRNMV-VHTSKKVKGNKD 101
           +YA   N +  CKSL+  +  I+ D+V N   V+TS+ VKG+KD
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKD 104

[Close]
BLAST of HG10018632 vs. NCBI nr
Match: KGN44636.2 (hypothetical protein Csa_016656 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 0 

Query: 1   MVVSKENMVIFIGVLLFSMNFVKIANTIRSINQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+NM +FIG+LLFS+NFV+IA+  R I +    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARGNNPIDHCKSLQDYQDRIHGDEVRNMV-VHTSKKVKGNKD 101
           +YA   N +  CKSL+  +  I+GD+V N   V+TS+ VKG+KD
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKD 104

[Close]
BLAST of HG10018632 vs. ExPASy TrEMBL
Match: A0A0A0K605 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-13
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 0 

Query: 1   MVVSKENMVIFIGVLLFSMNFVKIANTIRSINQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+NM +FIG+LLFS+NFV+IA+  R I +    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARGNNPIDHCKSLQDYQDRIHGDEVRNMV-VHTSKKVKGNKD 101
           +YA   N +  CKSL+  +  I+GD+V N   V+TS+ VKG+KD
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKD 104

[Close]
BLAST of HG10018632 vs. ExPASy TrEMBL
Match: A0A0A0K3T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 0 

Query: 1   MVVSKENMVIFIGVLLFSMNFVKIANTIRSINQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+NM +FIG+LLFS+NFV+IA+  R I +    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARGNNPIDHCKSLQDYQDRIHGDEVRNMV-VHTSKKVKGNKD 101
           +YA   N +  CKSL+  +  I+ D+V N   V+TS+ VKG+KD
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKD 104

The following BLAST results are available for this feature:
BLAST of HG10018632 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646140.12.3e-1349.04hypothetical protein Csa_015664 [Cucumis sativus][more]
KGN44636.21.5e-1248.08hypothetical protein Csa_016656 [Cucumis sativus][more]
BLAST of HG10018632 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10018632 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6057.2e-1348.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1[more]
A0A0A0K3T56.1e-1247.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1[more]
BLAST of HG10018632 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018632.1HG10018632.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046916 cellular transition metal ion homeostasis
biological_process GO:0051179 localization
cellular_component GO:0016020 membrane
molecular_function GO:0046915 transition metal ion transmembrane transporter activity