HG10018506 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018506
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein of unknown function (DUF 3339)
Location	Chr04: 4766816 .. 4767025 (+)
RNA-Seq Expression	HG10018506
Synteny	HG10018506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

mRNA sequence

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

Coding sequence (CDS)

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

Protein sequence

MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFILALHIHIYTG

Homology

[Close]

BLAST of HG10018506 vs. NCBI nr
Match: XP_011649954.2 (uncharacterized protein LOC101211888 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 133

Query: 61  ALHIHIYTG 70
           ALHIHIYTG
Sbjct: 134 ALHIHIYTG 142

[Close]

BLAST of HG10018506 vs. NCBI nr
Match: XP_008441322.1 (PREDICTED: uncharacterized protein LOC103485472 isoform X1 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of HG10018506 vs. NCBI nr
Match: XP_008441325.2 (PREDICTED: uncharacterized protein LOC103485472 isoform X2 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 133

Query: 61  ALHIHIYTG 70
           ALHIHIYTG
Sbjct: 134 ALHIHIYTG 142

[Close]

BLAST of HG10018506 vs. NCBI nr
Match: XP_038884726.1 (uncharacterized protein LOC120075418 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 7.4e-29
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILY+VFIL
Sbjct: 77  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYSVFIL 136

Query: 61  ALHIHIYTG 70
           ALH+HIYTG
Sbjct: 137 ALHVHIYTG 145

[Close]

BLAST of HG10018506 vs. NCBI nr
Match: XP_023551540.1 (uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFFILYAVFIL
Sbjct: 155 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 214

Query: 61  ALHIHIYTG 70
           AL IHIYTG
Sbjct: 215 ALRIHIYTG 223

[Close]

BLAST of HG10018506 vs. ExPASy TrEMBL
Match: A0A0A0LMK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406095 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of HG10018506 vs. ExPASy TrEMBL
Match: A0A1S3B3X3 (uncharacterized protein LOC103485472 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of HG10018506 vs. ExPASy TrEMBL
Match: A0A1S3B371 (uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 133

Query: 61  ALHIHIYTG 70
           ALHIHIYTG
Sbjct: 134 ALHIHIYTG 142

[Close]

BLAST of HG10018506 vs. ExPASy TrEMBL
Match: A0A6J1K207 (uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFFILYAVFIL
Sbjct: 126 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 185

Query: 61  ALHIHIYTG 70
           AL IHIYTG
Sbjct: 186 ALRIHIYTG 194

[Close]

BLAST of HG10018506 vs. ExPASy TrEMBL
Match: A0A6J1FLS0 (uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC111445120 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFFILYAVFIL
Sbjct: 123 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 182

Query: 61  ALHIHIYTG 70
           AL IHIYTG
Sbjct: 183 ALRIHIYTG 191

[Close]

BLAST of HG10018506 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 5.3e-25
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           M+DWAPV++GVVLFV+LSPGLLF  PGNNR  +FG +KTNGKA+A+HTLIFF +Y + IL
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  ALHIHIYTG 70
           AL++HIYTG
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of HG10018506 vs. TAIR 10
Match: AT5G40970.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-22
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTNGKA+A+HTLIFF  Y + IL
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 61 ALHIHIYTG 70
          A+++HI TG
Sbjct: 61 AVNLHITTG 69

[Close]

BLAST of HG10018506 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 89.7 bits (221), Expect = 9.7e-19
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PVV+ V+LFVLL+PGLLFQ P   R  EFG+M+T+G ++ +HT+IFF L  +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 ALHIHIYTG 70
          A+ +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of HG10018506 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PV+I V+LFV+LSPGLLFQ P   R  EFG+M+T+G ++ +H +IFF L  +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 ALHIHIYTG 70
          A+++HIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of HG10018506 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-17
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDW PV++ V+LFV+L+PGLLFQ PG  +  EFG+ +T+  +V +H+L++F L  VF+L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 ALHIHIYTG 70
          AL IHIY G
Sbjct: 61 ALKIHIYIG 69

The following BLAST results are available for this feature:

BLAST of HG10018506 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649954.2	3.3e-29	98.55	uncharacterized protein LOC101211888 [Cucumis sativus]	[more]
XP_008441322.1	3.3e-29	98.55	PREDICTED: uncharacterized protein LOC103485472 isoform X1 [Cucumis melo]	[more]
XP_008441325.2	3.3e-29	98.55	PREDICTED: uncharacterized protein LOC103485472 isoform X2 [Cucumis melo]	[more]
XP_038884726.1	7.4e-29	97.10	uncharacterized protein LOC120075418 [Benincasa hispida]	[more]
XP_023551540.1	2.8e-28	97.10	uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10018506 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK8	1.6e-29	98.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406095 PE=4 SV=1	[more]
A0A1S3B3X3	1.6e-29	98.55	uncharacterized protein LOC103485472 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B371	1.6e-29	98.55	uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1K207	1.4e-28	97.10	uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412...	[more]
A0A6J1FLS0	1.4e-28	97.10	uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]

BLAST of HG10018506 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27030.1	5.3e-25	71.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40970.1	5.5e-22	65.22	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	9.7e-19	56.52	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.1e-17	53.62	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	3.1e-17	55.07	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 2.5E-33 score: 114.0
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF6	TRANSMEMBRANE PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018506.1	HG10018506.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane