HG10018491 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018491
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 4654788 .. 4655156 (+)
RNA-Seq ExpressionHG10018491
SyntenyHG10018491
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATGCAAGTGGGATTCGAAGTACGTCATTTGTGGCTAAAATAGATTACCACGGTTTGGTTAATAAGGTTATTTTTCCACTTGGTGAGGTCTATGTTATTCATGTTGATGCTGCTTGTTTGCCTAATTCCAAAAGATTCGAGTTTGAAGGGATTGTTGGTTCATCATCTGGTCGCATCCTGGCATCTTTGAGTGATTTCATTGACGTCTATTCACGTGTCATGGGAGCTGAAGCCTCTGCAATTTTTGAAGATCTCCTTTTGGTGAATAGAATGGAGTTTTCTCATATCTTGGTCCTTTCTGACTCATTGACTATGATTCAAATTTTGAAGGGGGGTTTTGGAGCCCCTTCTAGATGTGACTAA

mRNA sequence

ATGGATTATGCAAGTGGGATTCGAAGTACGTCATTTGTGGCTAAAATAGATTACCACGGTTTGGTTAATAAGGTTATTTTTCCACTTGGTGAGGTCTATGTTATTCATGTTGATGCTGCTTGTTTGCCTAATTCCAAAAGATTCGAGTTTGAAGGGATTGTTGGTTCATCATCTGGTCGCATCCTGGCATCTTTGAGTGATTTCATTGACGTCTATTCACGTGTCATGGGAGCTGAAGCCTCTGCAATTTTTGAAGATCTCCTTTTGGTGAATAGAATGGAGTTTTCTCATATCTTGGTCCTTTCTGACTCATTGACTATGATTCAAATTTTGAAGGGGGGTTTTGGAGCCCCTTCTAGATGTGACTAA

Coding sequence (CDS)

ATGGATTATGCAAGTGGGATTCGAAGTACGTCATTTGTGGCTAAAATAGATTACCACGGTTTGGTTAATAAGGTTATTTTTCCACTTGGTGAGGTCTATGTTATTCATGTTGATGCTGCTTGTTTGCCTAATTCCAAAAGATTCGAGTTTGAAGGGATTGTTGGTTCATCATCTGGTCGCATCCTGGCATCTTTGAGTGATTTCATTGACGTCTATTCACGTGTCATGGGAGCTGAAGCCTCTGCAATTTTTGAAGATCTCCTTTTGGTGAATAGAATGGAGTTTTCTCATATCTTGGTCCTTTCTGACTCATTGACTATGATTCAAATTTTGAAGGGGGGTTTTGGAGCCCCTTCTAGATGTGACTAA

Protein sequence

MDYASGIRSTSFVAKIDYHGLVNKVIFPLGEVYVIHVDAACLPNSKRFEFEGIVGSSSGRILASLSDFIDVYSRVMGAEASAIFEDLLLVNRMEFSHILVLSDSLTMIQILKGGFGAPSRCD
Homology
The following BLAST results are available for this feature:
BLAST of HG10018491 vs.
Match NameE-valueIdentityDescription
BLAST of HG10018491 vs.
Match NameE-valueIdentityDescription
BLAST of HG10018491 vs.
Match NameE-valueIdentityDescription
BLAST of HG10018491 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 32..120
e-value: 4.0E-7
score: 32.1
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 37..114
e-value: 1.2E-4
score: 21.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 32..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018491.1HG10018491.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity