HG10018483 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018483
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome-recycling factor, chloroplastic
Location	Chr04: 4590307 .. 4592786 (+)
RNA-Seq Expression	HG10018483
Synteny	HG10018483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTTTCTGAAACGTTCCTTCTCCTACAGAAATTTCATCATTCTCCGAAATTTTGCAAATCCAAGTTGTAAAATTTCGTTCATTGTCAACGATCTCCCCAACTCATGGACATCCGAGACGCCTGCCGTATTTCCTCTTCCTCCTTCAGATTTTATCCGAGAAAGTCGTAGGGGTTTTGCTAAAGGCCGAAAATCAAGTAATCGTCTTTCCATCTCTTATTACACTTAATCTTCTACTCAGTATTCTACCTTTCTCTTAATCTTGTTGAATATATTGTTCTTGTTTCTCCTGCTTCTTATAAGCTCCGGTTTTGAATTGCTTTTATTTTTTCTACTGGGAAGATGATTCTTCTACAAGTATGGCCGAGGCATTGCCTGATATTAGACCCACTATTAAAGCAAACGCTAGCTCCCAGATGGAGGCTGCAATAGCTGCATTATCGGGAGAATTAAGCAAACTTCGAACGGGCAGGGCATCATCTGGTGATTGCTTACATTTTCTTATACATTATGTTCCATTTACACTTAAAGGTTTTATTGTCTTAGCCTGCCCTTGTGATTGCTTACACTATCTTATACACTGTGTGTTTACAGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGATGCCATTGAATCAGATCGCGGTTGTATCGGTCTTGGATCCAAAAACATTGTCAATAAATCCCTATGATCCTAATGTAATCAGCTTACAAAATCCTGTTCTTAAGTTATTTCTTCATTTTTCTTCATCATGGTTAATTTCTCGGGTTCATTGATTGTTTGTGGTAAGGAGTACATGGACCTGTTTGGATTGGCTTTTTAACTGCTTAAAAAGATTTCTCTGAGTACTTAGAAATTCAATCCAAACATTCCTATATTGTGAAGTTCACTTAACAGAGCAAATGTTGCTATAATTTTCAATTTTTCATCTTTTGCAATTCTTGAATTATATTATATCGAGTTATGCTTTATTAGAGTATTGTCATTAGAGTATTGTCATTATCGTAACAAGGTTCTTGTTTCTACTCTACCTGACGTGAGAATTTGTATACACCTTCGGCATATCTGTTAGAGTTCTTAGATGAAAAGGTGTATCTGAAATGTGATACTTATGATAATTACTCTTCTATGCAGACACTAAAGAATTTAGAGAGTGCTATAGTCTCATCTCCTTTAGGTCTAGCACCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCGTAAGCTTTCATGTTGCTCTTCCACTGTCTATATGGCTGTTGTTTAAATATAAAAGCTTATCGTATCTGTGAGTTAACACTTTTGACCAATATTATTTCCTGATTTTTCTTTTTGATGCTTGCTATACCAGATTGACCAAAGAACATATCCAGGTAATCTCCTAATTATTTTTTCTCTCTCCTTTTTGTTCTTTTCTTTTTTTCTATAATGCCTATTGCCTACATGGTGGATGTTTTTCTAGGCCATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGTTATTTTAGCTAATCTTCACTTTACAAATTTCTTTTTCAGAAATCTTTACAAGTAATCATCTAGAGCATAAAAAATTTGAACAGTTCTTATTGTTTCGTGAAGTACCTTGTGTGGTAAGTTCAATAGTTGTAGAAGTCCCAAGAGGCCAAGATTTCCTTTAGTCAGTGTTATTTTTGTGACACTTACCTCATCTATTACTTTGTATCCAAAACAACAAAGTTTCTTGTTAGCTAACAAGATAACCCCAGCTTAACTTCACCCGAATGGTCGTGAAGTCATTATGTTAATACCACAAACTCTTATTTTTCCTTGAGAACAGGAAACAAATGGTTATCAAACGAAATTTTATTTGTTTTTTTGTTCTTTAGAACTTGTTTTTACCAGTTAATTCATTTATTTCCTTTCTTCCAACTGTTTCTAAATCAATTACTAACTGATATTGCAAATTCCCAGGTTCCAAATCAATGCTGTGGTTTCATTTGTGTGTATGAAAAGTTGGATTAATGTCGATTTGGAATGATTTTCTAAGTTCTTAAAAAATGTGTTTTTAAGAGCACTTAAAAATTCATTCCAAACAGATTTTTAGTCTTCATATAGTCCTAGGTGTTAGCAAGTGTGTCGTAAAAGGACTTTATTTGACTATCCACATTATTTTATAGAATTTTGAGTTGATTGGTGGTTGTTTCACAGGCCATGGATACAGTTAAAAAAATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGACTGGAAAAGGAAGTGAGTTGAAGAAGTTGAACCTAATCAAATCATATTTCAAACTTGCTTTTTATTAACTAAATATTGTTACGTTTCTGCTTCCAGGTAGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGATATCTGCAAGGCAAAGGAGAAGGAGATCACTGGAGGTTAA

mRNA sequence

ATGGCTATGTTTCTGAAACGTTCCTTCTCCTACAGAAATTTCATCATTCTCCGAAATTTTGCAAATCCAAGTTGTAAAATTTCGTTCATTGTCAACGATCTCCCCAACTCATGGACATCCGAGACGCCTGCCGTATTTCCTCTTCCTCCTTCAGATTTTATCCGAGAAAGTCGTAGGGGTTTTGCTAAAGGCCGAAAATCAAATGATTCTTCTACAAGTATGGCCGAGGCATTGCCTGATATTAGACCCACTATTAAAGCAAACGCTAGCTCCCAGATGGAGGCTGCAATAGCTGCATTATCGGGAGAATTAAGCAAACTTCGAACGGGCAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGATGCCATTGAATCAGATCGCGGTTGTATCGGTCTTGGATCCAAAAACATTGTCAATAAATCCCTATGATCCTAATACACTAAAGAATTTAGAGAGTGCTATAGTCTCATCTCCTTTAGGTCTAGCACCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAACATATCCAGGCCATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGCCATGGATACAGTTAAAAAAATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGACTGGAAAAGGAAGTAGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGATATCTGCAAGGCAAAGGAGAAGGAGATCACTGGAGGTTAA

Coding sequence (CDS)

ATGGCTATGTTTCTGAAACGTTCCTTCTCCTACAGAAATTTCATCATTCTCCGAAATTTTGCAAATCCAAGTTGTAAAATTTCGTTCATTGTCAACGATCTCCCCAACTCATGGACATCCGAGACGCCTGCCGTATTTCCTCTTCCTCCTTCAGATTTTATCCGAGAAAGTCGTAGGGGTTTTGCTAAAGGCCGAAAATCAAATGATTCTTCTACAAGTATGGCCGAGGCATTGCCTGATATTAGACCCACTATTAAAGCAAACGCTAGCTCCCAGATGGAGGCTGCAATAGCTGCATTATCGGGAGAATTAAGCAAACTTCGAACGGGCAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGATGCCATTGAATCAGATCGCGGTTGTATCGGTCTTGGATCCAAAAACATTGTCAATAAATCCCTATGATCCTAATACACTAAAGAATTTAGAGAGTGCTATAGTCTCATCTCCTTTAGGTCTAGCACCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAACATATCCAGGCCATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGCCATGGATACAGTTAAAAAAATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGACTGGAAAAGGAAGTAGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGATATCTGCAAGGCAAAGGAGAAGGAGATCACTGGAGGTTAA

Protein sequence

MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRGFAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG

Homology

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BLAST of HG10018483 vs. NCBI nr
Match: XP_038885564.1 (ribosome-recycling factor isoform X1 [Benincasa hispida])

HSP 1 Score: 475.3 bits (1222), Expect = 3.4e-130
Identity = 252/263 (95.82%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNFIILRNFAN + K SFIVNDL NS TSETPAVF LPPSDF+RESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANSNSKFSFIVNDLSNSSTSETPAVFALPPSDFVRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQA+CKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAICKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. NCBI nr
Match: XP_023544000.1 (uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 465.3 bits (1196), Expect = 3.5e-127
Identity = 244/263 (92.78%), Postives = 252/263 (95.82%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS  +SF VNDL NSWTSE P  F LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. NCBI nr
Match: KAG7033363.1 (frr [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 462.6 bits (1189), Expect = 2.2e-126
Identity = 243/263 (92.40%), Postives = 250/263 (95.06%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS   SF VNDL N WTSE P  F LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. NCBI nr
Match: XP_022990977.1 (uncharacterized protein LOC111487708 [Cucurbita maxima])

HSP 1 Score: 461.1 bits (1185), Expect = 6.5e-126
Identity = 243/263 (92.40%), Postives = 250/263 (95.06%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSF YR+F++LRNFANPS   SF VNDL N WTSE P VF LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFFYRSFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. NCBI nr
Match: KAG6602677.1 (hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 459.5 bits (1181), Expect = 1.9e-125
Identity = 242/263 (92.02%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS   SF VNDL N WTSE P  F LP +DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGAFALPSADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. ExPASy Swiss-Prot
Match: Q3A398 (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=frr PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 67/174 (38.51%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 89  ASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSIN 148
           A S M+ A+ +L  +++K+RTGRAS+ +LD ++V+  G   PLNQ+  ++V +P+ ++I 
Sbjct: 9   ARSGMDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQ 68

Query: 149 PYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSI 208
           P++   L ++E AI  + LGL P  DG  +  VIPP+T+E  + M K+V K  ED++  +
Sbjct: 69  PWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGV 128

Query: 209 RRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEI 261
           R AR+ A D +KK+  +    +DD+KR EKE+ ++T  ++   +D+   KEKEI
Sbjct: 129 RSARRDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQKEKEI 182

[Close]

BLAST of HG10018483 vs. ExPASy Swiss-Prot
Match: Q9KA66 (Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=frr PE=3 SV=3)

HSP 1 Score: 122.5 bits (306), Expect = 7.2e-27
Identity = 72/175 (41.14%), Postives = 109/175 (62.29%), Query Frame = 0


Query: 88  NASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSI 147
           +A  +M  A  AL  EL+KLR GRA+  MLD I VE  G + PLNQ+A +SV + + L I
Sbjct: 8   DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67

Query: 148 NPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQS 207
            P+D +++ ++E AI  S LGL P  DG  +   IPPLT+E  + + KLV K  E+++ +
Sbjct: 68  QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127

Query: 208 IRRARQKAMDTVKK--MSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEI 261
           +R  R+ A D +KK        +DD++R+ ++V +LT K+I+  +   +AKEKEI
Sbjct: 128 VRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEI 182

[Close]

BLAST of HG10018483 vs. ExPASy Swiss-Prot
Match: Q39W85 (Ribosome-recycling factor OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=frr PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-27
Identity = 66/176 (37.50%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 87  ANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLS 146
           A+  + ME ++ AL  E  K+RTGRA++G+LD I VE  G   PL+Q+A +SV +P+T++
Sbjct: 7   ADMKAHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTIT 66

Query: 147 INPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQ 206
           I P++   +  +E AI+++ LG  P  DG+ +   +PPLT+E  + + K + K  ED++ 
Sbjct: 67  IQPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTKV 126

Query: 207 SIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEI 261
           ++R  R+  +D++KK+       +DD+KR EKEV ++T  F+   E++   KEKE+
Sbjct: 127 AVRNIRRDGIDSLKKLEKDKKISEDDLKRAEKEVQDVTNTFVAKVEEVLTHKEKEV 182

[Close]

BLAST of HG10018483 vs. ExPASy Swiss-Prot
Match: Q2G8K7 (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=frr PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-27
Identity = 74/179 (41.34%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 86  KANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTL 145
           KA+   +M+ A+ +L G+LS LRTGRA++ +LD I+VE  G  MPL Q+A VS  +P+ L
Sbjct: 6   KADLERRMKGAVESLRGDLSGLRTGRANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLL 65

Query: 146 SINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSR 205
           S+  +D + +  +E AI S+ LGL P  DG  L   IP LT+E  + + KL +K  E++R
Sbjct: 66  SVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAENAR 125

Query: 206 QSIRRARQKAMDTVK--KMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITG 263
            +IR  R+  MD +K  +      +D+ KR E ++ +LT   IK A++   AKEKEI G
Sbjct: 126 IAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDIIKQADEAAAAKEKEILG 184

[Close]

BLAST of HG10018483 vs. ExPASy Swiss-Prot
Match: Q5WFT1 (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=frr PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 69/178 (38.76%), Postives = 112/178 (62.92%), Query Frame = 0


Query: 85  IKANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKT 144
           IKA+A ++M+ AI  LS EL+KLR GRA+  +LD + VE  G + PLNQ+A V+V + + 
Sbjct: 5   IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64

Query: 145 LSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDS 204
           L I PYD   + ++E AI+ S LGL P  DG+ +   IPPLT+E  + + +LV+K  E+S
Sbjct: 65  LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124

Query: 205 RQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEI 261
           + ++R  R+ A D +KK+       +D+++    ++ +LT  ++   ++  K KE+EI
Sbjct: 125 KVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEI 182

[Close]

BLAST of HG10018483 vs. ExPASy TrEMBL
Match: A0A6J1JKE4 (Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487708 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.2e-126
Identity = 243/263 (92.40%), Postives = 250/263 (95.06%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSF YR+F++LRNFANPS   SF VNDL N WTSE P VF LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFFYRSFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. ExPASy TrEMBL
Match: A0A6J1GLU1 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455524 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.2e-126
Identity = 242/263 (92.02%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS   SF V DL N WTSE P  F LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. ExPASy TrEMBL
Match: A0A5D3DLY3 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00450 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 235/263 (89.35%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNFIILRNFAN +C  SF +N   NSWTS+T A F LPPSDFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVETSGVK+PLNQIA VSVLD KTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLESAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKK+SSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAE++CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEELCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. ExPASy TrEMBL
Match: A0A1S3B2S9 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 235/263 (89.35%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNFIILRNFAN +C  SF +N   NSWTS+T A F LPPSDFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVETSGVK+PLNQIA VSVLD KTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLESAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKK+SSSYPKDDMKRLEKEVDE
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKISSSYPKDDMKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAE++CKAKEKEITGG
Sbjct: 241 LTKKFIKSAEELCKAKEKEITGG 263

[Close]

BLAST of HG10018483 vs. ExPASy TrEMBL
Match: A0A6J1BWU9 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006057 PE=3 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 4.7e-122
Identity = 236/263 (89.73%), Postives = 247/263 (93.92%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRS SYRNF++ RN A PS K SF VND   +WTSETP VF LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSLSYRNFLLFRNSAVPSRKFSFFVNDPSIAWTSETPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAK RKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKARKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVETSG+KMPLNQIAVVSVLD KTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVETSGLKMPLNQIAVVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDE 240
           VIPPLTKEHI A+CKLVTKCCEDSRQSIRRARQKAMDT+KKM++SYPKDD+KRLEKEVDE
Sbjct: 181 VIPPLTKEHILAVCKLVTKCCEDSRQSIRRARQKAMDTIKKMNASYPKDDIKRLEKEVDE 240

Query: 241 LTKKFIKSAEDICKAKEKEITGG 264
           LTKKFIKSAED+CKAKEKEI GG
Sbjct: 241 LTKKFIKSAEDLCKAKEKEIAGG 263

[Close]

BLAST of HG10018483 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-84
Identity = 175/266 (65.79%), Postives = 210/266 (78.95%), Query Frame = 0


Query: 1   MAMFLKRSFSYRN---FIILRNFANPSCKISFIVNDLPN-SWTSETPAVFPLPPSDFIRE 60
           MAMF++R+ S RN   F+   +    S   SFI +  PN          F L   DF+R+
Sbjct: 2   MAMFVRRALSSRNAIGFLRRSSVVVQSRDFSFISS--PNLMMMGGRDLQFDLSMPDFLRD 61

Query: 61  SRRGFAKGRKS-NDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSG 120
           SRRGFAKG+KS +DS T M +A PDI PT+KA ASSQMEAAI ALS +L+KLRTGRA+ G
Sbjct: 62  SRRGFAKGKKSKDDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRAAPG 121

Query: 121 MLDHIIVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDG 180
           MLDHI+VET GVKMPLN +A+VSVLDPKTLS+NPYDP+T+K LE AIV+SPLGL P++DG
Sbjct: 122 MLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPKLDG 181

Query: 181 ERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLE 240
           +RL+A IP LTKEHIQAMCK+VTK  E  +QSIRRARQKA+DT+KK  SS PKD++KRLE
Sbjct: 182 QRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKAGSSLPKDEVKRLE 241

Query: 241 KEVDELTKKFIKSAEDICKAKEKEIT 262
           KEVDELTKKF+KSAED+CK+KEKEIT
Sbjct: 242 KEVDELTKKFVKSAEDMCKSKEKEIT 265

[Close]

BLAST of HG10018483 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-22
Identity = 61/181 (33.70%), Postives = 105/181 (58.01%), Query Frame = 0


Query: 82  RPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLD 141
           +  I+ +  S+ME  I  L    + +RTGR+++ MLD I VE  G  + L  IA +S  D
Sbjct: 92  KSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPD 151

Query: 142 PKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCC 201
             +L + PYD ++LK +E AIV+S LG+ P  DG+ +   +PPLT +  + + K+V K  
Sbjct: 152 GSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQS 211

Query: 202 EDSRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKE 261
           E+ + ++R  R+ A+ +  K+       +D++K L  ++ +L   ++K  E++ K KEKE
Sbjct: 212 EEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKE 271

The following BLAST results are available for this feature:

BLAST of HG10018483 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885564.1	3.4e-130	95.82	ribosome-recycling factor isoform X1 [Benincasa hispida]	[more]
XP_023544000.1	3.5e-127	92.78	uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo]	[more]
KAG7033363.1	2.2e-126	92.40	frr [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022990977.1	6.5e-126	92.40	uncharacterized protein LOC111487708 [Cucurbita maxima]	[more]
KAG6602677.1	1.9e-125	92.02	hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10018483 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3A398	3.2e-27	38.51	Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103...	[more]
Q9KA66	7.2e-27	41.14	Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 1819...	[more]
Q39W85	9.4e-27	37.50	Ribosome-recycling factor OS=Geobacter metallireducens (strain ATCC 53774 / DSM ...	[more]
Q2G8K7	9.4e-27	41.34	Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]
Q5WFT1	1.2e-26	38.76	Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=frr P...	[more]

BLAST of HG10018483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JKE4	3.2e-126	92.40	Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1GLU1	9.2e-126	92.02	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3DLY3	1.2e-122	89.35	Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B2S9	1.2e-122	89.35	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499...	[more]
A0A6J1BWU9	4.7e-122	89.73	Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of HG10018483 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01800.1	1.3e-84	65.79	Ribosome recycling factor	[more]
AT3G63190.1	5.5e-22	33.70	ribosome recycling factor, chloroplast precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 231..251
None	No IPR available	GENE3D	3.30.1360.40		coord: 111..185 e-value: 7.6E-57 score: 193.6
None	No IPR available	PANTHER	PTHR20982:SF12	OSJNBA0076N16.8 PROTEIN	coord: 1..262
IPR036191	RRF superfamily	GENE3D	1.10.132.20		coord: 90..260 e-value: 7.6E-57 score: 193.6
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 84..261
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 101..260 e-value: 3.8E-56 score: 189.5
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 1..262
IPR002661	Ribosome recycling factor	CDD	cd00520	RRF	coord: 85..260 e-value: 4.37332E-51 score: 163.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018483.1	HG10018483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043023	ribosomal large subunit binding