HG10018460 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018460
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Chr04: 4376601 .. 4376840 (+)
RNA-Seq Expression	HG10018460
Synteny	HG10018460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAATGGAGGAGGAGGCAGCTTCTTTCAAATGCCACTTCACTATCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTCGACCACCTTCTTGTTGAGTACGGTCTCCCGACTCGTGGTGACTTGCCCTATAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGATTTCCACTATAGCTTTAAAGATCCCTCTCTTATTAATAAGAAAGTTATGTAG

mRNA sequence

ATGGAGAACAATGGAGGAGGAGGCAGCTTCTTTCAAATGCCACTTCACTATCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTCGACCACCTTCTTGTTGAGTACGGTCTCCCGACTCGTGGTGACTTGCCCTATAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGATTTCCACTATAGCTTTAAAGATCCCTCTCTTATTAATAAGAAAGTTATGTAG

Coding sequence (CDS)

ATGGAGAACAATGGAGGAGGAGGCAGCTTCTTTCAAATGCCACTTCACTATCCGAGATACTCGAAGAAGGACTACGAGAACATGCCTGAATGGAAGCTCGACCACCTTCTTGTTGAGTACGGTCTCCCGACTCGTGGTGACTTGCCCTATAAACGACAGTTCGCTATGGGTGCTTTCCTTTGGCCTGATTTCCACTATAGCTTTAAAGATCCCTCTCTTATTAATAAGAAAGTTATGTAG

Protein sequence

MENNGGGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDFHYSFKDPSLINKKVM

Homology

[Close]

BLAST of HG10018460 vs. NCBI nr
Match: KAG6578420.1 (hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015984.1 hypothetical protein SDJN02_21088, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MENN---GGGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMG 60
          MENN    GG +FFQMPLHYPRYSK DYENMPEWKLD LL+EYGLPT G+LPYKRQFAMG
Sbjct: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60

Query: 61 AFLWPDFHYSFK-DPSLINKKVM 80
          AFLW D+H +FK DPSL+N K+M
Sbjct: 61 AFLWHDYHPTFKLDPSLLNNKLM 83

[Close]

BLAST of HG10018460 vs. NCBI nr
Match: XP_010108400.1 (uncharacterized protein LOC21393700 [Morus notabilis] >EXC19391.1 hypothetical protein L484_010408 [Morus notabilis])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 2  ENNGGGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLW 61
          + N  G S+FQMPLHYPRY+K+DY++MPEWKLD LL +YGLPT GDL YKR FA+GAFLW
Sbjct: 6  KKNESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLW 65

Query: 62 PDFHYSFKDP---------SLINKKV 79
          PDFH   K P         SL++KK+
Sbjct: 66 PDFHQGSKPPPPYRTINDASLLDKKI 91

[Close]

BLAST of HG10018460 vs. NCBI nr
Match: PON37357.1 (hypothetical protein PanWU01x14_320780 [Parasponia andersonii])

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 2  ENNGGGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLW 61
          +++  G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGL T GDL YKR FA+GAFLW
Sbjct: 24 KDSNNGVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLW 83

Query: 62 PDFHYSFKDPSLINKKV 79
          PD+  +F D SL++KKV
Sbjct: 84 PDYR-TFTDASLLDKKV 99

[Close]

BLAST of HG10018460 vs. NCBI nr
Match: KAF4351382.1 (hypothetical protein G4B88_028221 [Cannabis sativa])

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 7   GGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-- 66
           G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGLPT GDL YKR FA+GAFLWP F  
Sbjct: 30  GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLTEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 67  ---------HYSFKDPSLINKKV 79
                    ++SF D SL++KKV
Sbjct: 90  EHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of HG10018460 vs. NCBI nr
Match: KAF4347851.1 (hypothetical protein G4B88_030584 [Cannabis sativa] >KAF4375688.1 hypothetical protein F8388_014410 [Cannabis sativa])

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 7   GGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-- 66
           G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGLPT GDL YKR FA+GAFLWP F  
Sbjct: 30  GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLNEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 67  ---------HYSFKDPSLINKKV 79
                    ++SF D SL++KKV
Sbjct: 90  EHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of HG10018460 vs. ExPASy TrEMBL
Match: W9SNS4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010408 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.2e-24
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 2  ENNGGGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLW 61
          + N  G S+FQMPLHYPRY+K+DY++MPEWKLD LL +YGLPT GDL YKR FA+GAFLW
Sbjct: 6  KKNESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLW 65

Query: 62 PDFHYSFKDP---------SLINKKV 79
          PDFH   K P         SL++KK+
Sbjct: 66 PDFHQGSKPPPPYRTINDASLLDKKI 91

[Close]

BLAST of HG10018460 vs. ExPASy TrEMBL
Match: A0A2P5ALC9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_320780 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.9e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 2  ENNGGGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLW 61
          +++  G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGL T GDL YKR FA+GAFLW
Sbjct: 24 KDSNNGVSYFQMPLHYPRYTKKDYQDMPEWKLDRLLAEYGLSTHGDLAYKRDFAIGAFLW 83

Query: 62 PDFHYSFKDPSLINKKV 79
          PD+  +F D SL++KKV
Sbjct: 84 PDYR-TFTDASLLDKKV 99

[Close]

BLAST of HG10018460 vs. ExPASy TrEMBL
Match: A0A7J6DZ12 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028221 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.9e-24
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 7   GGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-- 66
           G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGLPT GDL YKR FA+GAFLWP F  
Sbjct: 30  GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLTEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 67  ---------HYSFKDPSLINKKV 79
                    ++SF D SL++KKV
Sbjct: 90  EHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of HG10018460 vs. ExPASy TrEMBL
Match: A0A7J6DP11 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014410 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 7   GGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-- 66
           G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGLPT GDL YKR FA+GAFLWP F  
Sbjct: 30  GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLNEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 67  ---------HYSFKDPSLINKKV 79
                    ++SF D SL++KKV
Sbjct: 90  EHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of HG10018460 vs. ExPASy TrEMBL
Match: A0A803NG19 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 7   GGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDF-- 66
           G S+FQMPLHYPRY+KKDY++MPEWKLD LL EYGLPT GDL YKR FA+GAFLWP F  
Sbjct: 30  GISYFQMPLHYPRYTKKDYQDMPEWKLDRLLNEYGLPTHGDLAYKRDFAIGAFLWPSFRP 89

Query: 67  ---------HYSFKDPSLINKKV 79
                    ++SF D SL++KKV
Sbjct: 90  EHKTSSSPSYHSFNDTSLLDKKV 112

[Close]

BLAST of HG10018460 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 6  GGGSFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPDFH 65
          G GS F+MPLHYPRYSK+DY++MPEWKLD +L +YGL T GDL +KR FA+GAFLW    
Sbjct: 27 GEGSVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW---- 86

Query: 66 YSFKDPSLINKK 78
           S ++P L  +K
Sbjct: 87 ISTRNPKLYQEK 94

[Close]

BLAST of HG10018460 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 9  SFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLW 62
          S FQ+PLHYP+Y+K DYE MPEW+LD LL EYGLP  GD   KR+FA+GAFLW
Sbjct: 43 SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95

[Close]

BLAST of HG10018460 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 9  SFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGD--LPYKRQFAMGAFLWP 63
          S F+MPLHYPRY+K+DYE M EW+LD LL EYGL    D  L  KR FA+  F+WP
Sbjct: 34 SGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of HG10018460 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-13
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 9  SFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTRGDLPYKRQFAMGAFLWPD 64
          S FQ+PLHYP+YSK DYE M + +LD LL +YG    G L  KR FA+ +FLWPD
Sbjct: 45 SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPD 99

[Close]

BLAST of HG10018460 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 9   SFFQMPLHYPRYSKKDYENMPEWKLDHLLVEYGLPTR-GDLPYKRQFAMGAFLW 62
           S FQMPL YP Y+K+ Y+ M E +LD LL  YGLPT  G+L  K++FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:

BLAST of HG10018460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578420.1	3.8e-29	77.11	hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_010108400.1	1.1e-23	61.63	uncharacterized protein LOC21393700 [Morus notabilis] >EXC19391.1 hypothetical p...	[more]
PON37357.1	1.8e-23	67.53	hypothetical protein PanWU01x14_320780 [Parasponia andersonii]	[more]
KAF4351382.1	1.8e-23	65.06	hypothetical protein G4B88_028221 [Cannabis sativa]	[more]
KAF4347851.1	4.1e-23	65.06	hypothetical protein G4B88_030584 [Cannabis sativa] >KAF4375688.1 hypothetical p...	[more]

BLAST of HG10018460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9SNS4	5.2e-24	61.63	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010408 PE=4 SV=1	[more]
A0A2P5ALC9	8.9e-24	67.53	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_320780 PE...	[more]
A0A7J6DZ12	8.9e-24	65.06	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028221 PE=4 SV=1	[more]
A0A7J6DP11	2.0e-23	65.06	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014410 PE=4 SV=1	[more]
A0A803NG19	2.0e-23	65.06	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of HG10018460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55570.1	2.4e-21	61.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41761.1	1.2e-17	69.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G09950.1	3.1e-13	60.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G55620.1	4.1e-13	58.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11405.1	1.0e-11	59.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	OS06G0523300 PROTEIN	coord: 8..63
None	No IPR available	PANTHER	PTHR33513:SF4	OS01G0221400 PROTEIN	coord: 8..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018460.1	HG10018460.1	mRNA