HG10018385 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018385
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	HIG1 domain-containing protein
Location	Chr04: 3645486 .. 3645994 (+)
RNA-Seq Expression	HG10018385
Synteny	HG10018385

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATTCAAGCCTGGGTTTCTGAACACAAACTCACCACCATTGGTTAGTATTACTACTCTTCTTCTTATCATCTTCATTTTCCAATATTTTTCTCTTCTCTGTTTTTAAATCTTTTTTGCTTATACATAGGAGCTCTCTGGGCATCTGGGATCGGAGCATCCCTCGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCCAGGTAACATCACTCATTAAAATACAAACTCTTAAATCATCGATAAACGAAAATCAACTATAATTCCGGAGAGGAATAACATTGCAAGTTTGGTTACTAAGATTTGAGTATTTTTCCCTTTTCTAATTTTCTAATTCATAATGGGATATTAATTTGGTTTCTAATAGGATGCATGCTCAAGCATTGACCTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGACAACAAACTCGCCGGCGAACAATCTGAAGCTCCCGCTTCCCCGGGAGGGAAATGA

mRNA sequence

ATGGAAGCTATTCAAGCCTGGGTTTCTGAACACAAACTCACCACCATTGGAGCTCTCTGGGCATCTGGGATCGGAGCATCCCTCGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCCAGGATGCATGCTCAAGCATTGACCTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGACAACAAACTCGCCGGCGAACAATCTGAAGCTCCCGCTTCCCCGGGAGGGAAATGA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCCTGGGTTTCTGAACACAAACTCACCACCATTGGAGCTCTCTGGGCATCTGGGATCGGAGCATCCCTCGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCCAGGATGCATGCTCAAGCATTGACCTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGACAACAAACTCGCCGGCGAACAATCTGAAGCTCCCGCTTCCCCGGGAGGGAAATGA

Protein sequence

MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKLAGEQSEAPASPGGK

Homology

[Close]

BLAST of HG10018385 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSEHKLTTIGALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEAPASPGGK 86
          AAVYHYY++KLAG +SEAPASPGGK
Sbjct: 61 AAVYHYYEDKLAGGRSEAPASPGGK 85

[Close]

BLAST of HG10018385 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEAPASPGG 85
          AAVYHYYDNK+  ++SEAP   GG
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84

[Close]

BLAST of HG10018385 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEA-PASPGGK 86
          AAVYHYYDNK   ++SEA P S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of HG10018385 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 6.8e-32
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEAPAS---PGGK 86
          AAVYHYY+NK AG +SEAP S   PGG+
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAVVPGGQ 88

[Close]

BLAST of HG10018385 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEAPAS 82
          AAVYHYY+NK AG +SEAP S
Sbjct: 61 AAVYHYYENKSAGVRSEAPTS 81

[Close]

BLAST of HG10018385 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEAPASPGG 85
          AAVYHYYDNK+  ++SEAP   GG
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84

[Close]

BLAST of HG10018385 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEA-PASPGGK 86
          AAVYHYYDNK   ++SEA P S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of HG10018385 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1   MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVSEHKLT+IG LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYDNKLAGEQSE 78
           AAVYHYY+ +L GE SE
Sbjct: 98  AAVYHYYEKRL-GEPSE 113

[Close]

BLAST of HG10018385 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVSEHKLT+IG LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKLAGEQSEAPASP 83
          AA YHYY+ K AGEQ +  ASP
Sbjct: 61 AAAYHYYE-KRAGEQGD-NASP 80

[Close]

BLAST of HG10018385 vs. ExPASy TrEMBL
Match: W9QXG0 (BTB/POZ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012295 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.8e-26
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGALWASGIGASLAY + SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKLAGEQSEAPASP 83
          GAA+YHYY+ ++  + +E  ASP
Sbjct: 61 GAAIYHYYEKRVGEKDAENIASP 83

[Close]

BLAST of HG10018385 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 2  EAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of HG10018385 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-18
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4  IQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNK 71
            YYD+K
Sbjct: 71 VEYYDHK 77

The following BLAST results are available for this feature:

BLAST of HG10018385 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886475.1	1.9e-34	92.94	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
XP_004138401.1	3.6e-33	90.48	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	1.0e-32	89.53	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
KAG6578469.1	6.8e-32	86.36	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	2.0e-31	90.12	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10018385 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018385 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	1.7e-33	90.48	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	5.0e-33	89.53	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	2.4e-27	84.42	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5J5AU49	3.5e-26	80.49	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]
W9QXG0	7.8e-26	77.11	BTB/POZ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012295 PE...	[more]

BLAST of HG10018385 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	1.2e-18	60.87	Hypoxia-responsive family protein	[more]
AT5G27760.1	5.9e-18	59.70	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..71 e-value: 1.8E-6 score: 29.6
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..76
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 4.7E-9 score: 36.3
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 20.422523
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018385.1	HG10018385.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome