HG10018378 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAACTACTCCAAACTATGACCAAATTTCTCAAAAATCTTTCCAAACTACCAAACATGAAGATAGATTCTTCACTAGAGCTCTATCTAAAGAGGCTAATTCCTCCATCAACTCCTCTTTTCGAGTCTATTACGGCGGTGCTACCGGTGCGATTCCGTTCCGATGGGAGTCTCGACCCGGAACTCCAAAGCATACTTTTTCAGAAACTTCAATCCCTCCTCTTACTCCTCCTCCTTCTTACTATTCCTCTTCACATTCTACTTCAAAGGCTTCTTCCAAAGCAACCCTTTTGAGCTCGATTTTTCCTCGGTTCACGCCGAGGAAATCTCGAACAACTTCCCCATCTTTTTCTTCCTTCTCTGGCTCCTCCTCCTCGTCATCTTCCTTAGCATCCTGGTCATCCTCTCGCTCATCGTCCTCCTCGTCTCCCTCAGCTTTCGTTAGACCTAAATTCTTCAAACGTCGTCGTCGCTTCTCGGATTCTCCAAGCTTACCGTTCGAGTATAGCTTCGACGACAACGACGGGGACGAGGTGGGGGTTGGGAGTCGTCCCAATTCTCCTACATCAACTTTGTGCTTTGGTGGTTCTACTTCAAGTAGAGCTTCATTGTTTGGTGGTTGTTATCAGTTAGTGAGTGTGAAGAATGCTTTGTTGTCCATTGTTGGCCATGGATCTGCAACCAGAGGTACTCTTAATTATTTAGTTGTGTGA ATGCAAACTACTCCAAACTATGACCAAATTTCTCAAAAATCTTTCCAAACTACCAAACATGAAGATAGATTCTTCACTAGAGCTCTATCTAAAGAGGCTAATTCCTCCATCAACTCCTCTTTTCGAGTCTATTACGGCGGTGCTACCGGTGCGATTCCGTTCCGATGGGAGTCTCGACCCGGAACTCCAAAGCATACTTTTTCAGAAACTTCAATCCCTCCTCTTACTCCTCCTCCTTCTTACTATTCCTCTTCACATTCTACTTCAAAGGCTTCTTCCAAAGCAACCCTTTTGAGCTCGATTTTTCCTCGGTTCACGCCGAGGAAATCTCGAACAACTTCCCCATCTTTTTCTTCCTTCTCTGGCTCCTCCTCCTCGTCATCTTCCTTAGCATCCTGGTCATCCTCTCGCTCATCGTCCTCCTCGTCTCCCTCAGCTTTCGTTAGACCTAAATTCTTCAAACGTCGTCGTCGCTTCTCGGATTCTCCAAGCTTACCGTTCGAGTATAGCTTCGACGACAACGACGGGGACGAGGTGGGGGTTGGGAGTCGTCCCAATTCTCCTACATCAACTTTGTGCTTTGGTGGTTCTACTTCAAGTAGAGCTTCATTGTTTGGTGGTTGTTATCAGTTAGTGAGTGTGAAGAATGCTTTGTTGTCCATTGTTGGCCATGGATCTGCAACCAGAGGTACTCTTAATTATTTAGTTGTGTGA ATGCAAACTACTCCAAACTATGACCAAATTTCTCAAAAATCTTTCCAAACTACCAAACATGAAGATAGATTCTTCACTAGAGCTCTATCTAAAGAGGCTAATTCCTCCATCAACTCCTCTTTTCGAGTCTATTACGGCGGTGCTACCGGTGCGATTCCGTTCCGATGGGAGTCTCGACCCGGAACTCCAAAGCATACTTTTTCAGAAACTTCAATCCCTCCTCTTACTCCTCCTCCTTCTTACTATTCCTCTTCACATTCTACTTCAAAGGCTTCTTCCAAAGCAACCCTTTTGAGCTCGATTTTTCCTCGGTTCACGCCGAGGAAATCTCGAACAACTTCCCCATCTTTTTCTTCCTTCTCTGGCTCCTCCTCCTCGTCATCTTCCTTAGCATCCTGGTCATCCTCTCGCTCATCGTCCTCCTCGTCTCCCTCAGCTTTCGTTAGACCTAAATTCTTCAAACGTCGTCGTCGCTTCTCGGATTCTCCAAGCTTACCGTTCGAGTATAGCTTCGACGACAACGACGGGGACGAGGTGGGGGTTGGGAGTCGTCCCAATTCTCCTACATCAACTTTGTGCTTTGGTGGTTCTACTTCAAGTAGAGCTTCATTGTTTGGTGGTTGTTATCAGTTAGTGAGTGTGAAGAATGCTTTGTTGTCCATTGTTGGCCATGGATCTGCAACCAGAGGTACTCTTAATTATTTAGTTGTGTGA MQTTPNYDQISQKSFQTTKHEDRFFTRALSKEANSSINSSFRVYYGGATGAIPFRWESRPGTPKHTFSETSIPPLTPPPSYYSSSHSTSKASSKATLLSSIFPRFTPRKSRTTSPSFSSFSGSSSSSSSLASWSSSRSSSSSSPSAFVRPKFFKRRRRFSDSPSLPFEYSFDDNDGDEVGVGSRPNSPTSTLCFGGSTSSRASLFGGCYQLVSVKNALLSIVGHGSATRGTLNYLVV Homology
BLAST of HG10018378 vs. NCBI nr
Match: XP_011656432.1 (putative protein TPRXL [Cucumis sativus]) HSP 1 Score: 373.2 bits (957), Expect = 1.6e-99 Identity = 205/230 (89.13%), Postives = 212/230 (92.17%), Query Frame = 0
BLAST of HG10018378 vs. NCBI nr
Match: XP_038885974.1 (putative protein TPRXL [Benincasa hispida]) HSP 1 Score: 370.2 bits (949), Expect = 1.4e-98 Identity = 206/230 (89.57%), Postives = 214/230 (93.04%), Query Frame = 0
BLAST of HG10018378 vs. NCBI nr
Match: KAE8646577.1 (hypothetical protein Csa_005771 [Cucumis sativus]) HSP 1 Score: 367.5 bits (942), Expect = 8.9e-98 Identity = 202/227 (88.99%), Postives = 209/227 (92.07%), Query Frame = 0
BLAST of HG10018378 vs. NCBI nr
Match: XP_016901982.1 (PREDICTED: putative uncharacterized protein DDB_G0277255 [Cucumis melo] >KAA0052017.1 putative serine-rich protein [Cucumis melo var. makuwa]) HSP 1 Score: 364.4 bits (934), Expect = 7.5e-97 Identity = 204/231 (88.31%), Postives = 209/231 (90.48%), Query Frame = 0
BLAST of HG10018378 vs. NCBI nr
Match: XP_022134140.1 (putative protein TPRXL [Momordica charantia]) HSP 1 Score: 292.7 bits (748), Expect = 2.8e-75 Identity = 172/231 (74.46%), Postives = 187/231 (80.95%), Query Frame = 0
BLAST of HG10018378 vs. ExPASy TrEMBL
Match: A0A0A0K7T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 7.8e-100 Identity = 205/230 (89.13%), Postives = 212/230 (92.17%), Query Frame = 0
BLAST of HG10018378 vs. ExPASy TrEMBL
Match: A0A5A7UC51 (Putative serine-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005080 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 3.6e-97 Identity = 204/231 (88.31%), Postives = 209/231 (90.48%), Query Frame = 0
BLAST of HG10018378 vs. ExPASy TrEMBL
Match: A0A1S4E178 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 3.6e-97 Identity = 204/231 (88.31%), Postives = 209/231 (90.48%), Query Frame = 0
BLAST of HG10018378 vs. ExPASy TrEMBL
Match: A0A6J1BX95 (Uncharacterized protein OS=Momordica charantia OX=3673 GN=LOC111006479 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 1.3e-75 Identity = 172/231 (74.46%), Postives = 187/231 (80.95%), Query Frame = 0
BLAST of HG10018378 vs. ExPASy TrEMBL
Match: A0A6J1K022 (uncharacterized serine-rich protein C215.13-like OS=Cucurbita maxima OX=3661 GN=LOC111489820 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.7e-68 Identity = 162/202 (80.20%), Postives = 171/202 (84.65%), Query Frame = 0
BLAST of HG10018378 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). ) HSP 1 Score: 86.3 bits (212), Expect = 3.7e-17 Identity = 82/198 (41.41%), Postives = 109/198 (55.05%), Query Frame = 0
BLAST of HG10018378 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 5.1e-11 Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 0
BLAST of HG10018378 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 62.0 bits (149), Expect = 7.4e-10 Identity = 78/192 (40.62%), Postives = 95/192 (49.48%), Query Frame = 0
BLAST of HG10018378 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 2.9e-06 Identity = 59/165 (35.76%), Postives = 84/165 (50.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|