HG10018369 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018369
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-H2 finger protein ATL74-like
Location	Chr04: 3527042 .. 3527650 (-)
RNA-Seq Expression	HG10018369
Synteny	HG10018369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGAGTCCAATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGAGACGACGGCGGCACCGTCGAATGGAAGCAGCAGAACGCGAAATTCATATAGCACCGAAGCCAATTTTGACACGAACATGGTGATAATTCTTGCTGCCTTACTCTGCGCGTTGATTTGCGCTCTAGGACTAAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCACCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTCGCCGTATACGGTTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCACCGCCGGAGAGAAAATCAAAGTACTCCCTAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCATGTCCGACGTGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCTGAATCAGCTGCAGCTGAAGCCGGAAATCGACCCGCCGGAAATTCATCGGCTAGCGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTACCTGA

mRNA sequence

ATGGCGATGGAGTCCAATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGAGACGACGGCGGCACCGTCGAATGGAAGCAGCAGAACGCGAAATTCATATAGCACCGAAGCCAATTTTGACACGAACATGGTGATAATTCTTGCTGCCTTACTCTGCGCGTTGATTTGCGCTCTAGGACTAAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCACCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTCGCCGTATACGGTTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCACCGCCGGAGAGAAAATCAAAGTACTCCCTAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCATGTCCGACGTGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCTGAATCAGCTGCAGCTGAAGCCGGAAATCGACCCGCCGGAAATTCATCGGCTAGCGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTACCTGA

Coding sequence (CDS)

ATGGCGATGGAGTCCAATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGAGACGACGGCGGCACCGTCGAATGGAAGCAGCAGAACGCGAAATTCATATAGCACCGAAGCCAATTTTGACACGAACATGGTGATAATTCTTGCTGCCTTACTCTGCGCGTTGATTTGCGCTCTAGGACTAAACTCGATTGTCCGGTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACAGGCGGCGGAACAGCCTCGCGCCTCACCGCTACAGGGTTAAAGAAAAGCGCATTACGCCAAATTCCAGTCGCCGTATACGGTTCGGAATCGGGTCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCACCGCCGGAGAGAAAATCAAAGTACTCCCTAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCATGTCCGACGTGTCGTCAATCACTGCTCGAACAACAGTCGGCTTCTGAATCAGCTGCAGCTGAAGCCGGAAATCGACCCGCCGGAAATTCATCGGCTAGCGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTACCTGA

Protein sequence

MAMESNHHRPRPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNRPAGNSSASGQGEISITVDEIT

Homology

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BLAST of HG10018369 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa])

HSP 1 Score: 364.4 bits (934), Expect = 6.4e-97
Identity = 189/201 (94.03%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 3   MESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALG 62
           MESNHHRPR HRLLLD +TTAAPSNG SRTRNSY+ EANFDTNMVIILAALLCALICALG
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNG-SRTRNSYNNEANFDTNMVIILAALLCALICALG 60

Query: 63  LNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPI 122
           LNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSE+GLEIRETDCPI
Sbjct: 61  LNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPI 120

Query: 123 CLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNR 182
           CLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGNR
Sbjct: 121 CLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNR 180

Query: 183 PAGNSSASGQGEISITVDEIT 203
           PAGNSSASGQGEISITVDEIT
Sbjct: 181 PAGNSSASGQGEISITVDEIT 200

[Close]

BLAST of HG10018369 vs. NCBI nr
Match: KAG7016045.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 180/203 (88.67%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHRPRPHRLLLD  TT APSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNG-SRTRNSYTNEANFDTNMVIILAALLCALICA 102

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSESGL IRETDC
Sbjct: 103 LGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDC 162

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQSASES  A+AG
Sbjct: 163 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAG 222

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGNSSASGQGEISI +D+I+
Sbjct: 223 NRPAGNSSASGQGEISIPIDQIS 244

[Close]

BLAST of HG10018369 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 180/203 (88.67%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHRPRPHRLLLD  TT APSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNG-SRTRNSYTNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSESGL IRETDC
Sbjct: 61  LGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQSASES  A+AG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAG 180

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGNSSASGQGEISI +D+I+
Sbjct: 181 NRPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of HG10018369 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 4.7e-92
Identity = 179/203 (88.18%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHRPRPHRLLLD  TT APSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNG-SRTRNSYTNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCA RCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSESGL IRETDC
Sbjct: 61  LGLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQSASES  A+AG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAG 180

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGNSSASGQGEISI +D+I+
Sbjct: 181 NRPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of HG10018369 vs. NCBI nr
Match: KAG6578482.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.8 bits (891), Expect = 6.2e-92
Identity = 179/203 (88.18%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHRP PHRLLLD  TT APSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 1   MAMVSDHHRPHPHRLLLDANTTEAPSNG-SRTRNSYTNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSESGL IRETDC
Sbjct: 61  LGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQSASES  A+AG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAG 180

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGNSSASGQGEISI +D+I+
Sbjct: 181 NRPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of HG10018369 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-44
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 14  RLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    AP+N + + +   + +  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANAPANANPKPKGGIN-DTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 133
           RRF  +     AS           ATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 134 FTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of HG10018369 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-41
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 39  ANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSAL 98
           A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF         +   A G+KK AL
Sbjct: 35  ASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRAL 94

Query: 99  RQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCP 158
           + IPV  Y  E  L+++ T+C ICLGDF  GE ++VLPKCNHGFHV+CIDTWL SHSSCP
Sbjct: 95  KVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCP 154

Query: 159 TCRQSLLEQQSASESA 175
           TCRQSLLE Q+ +  +
Sbjct: 155 TCRQSLLEHQTPANGS 168

[Close]

BLAST of HG10018369 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.7e-40
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 13  HRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL+          S   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKI 132
               +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of HG10018369 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 35  YSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGT-ASRLTATGL 94
           Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E GG     RLT TG+
Sbjct: 46  YVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGV 105

Query: 95  KKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLAS 154
           K+ AL+      Y +E  L   +T+C ICL +F A E++K+LP C+HGFHVRCID WL+S
Sbjct: 106 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 165

Query: 155 HSSCPTCRQSLLE 167
           HSSCPTCR  L++
Sbjct: 166 HSSCPTCRHCLIQ 178

[Close]

BLAST of HG10018369 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-30
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 38  EANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GLK 97
           E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+K
Sbjct: 51  ENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIK 110

Query: 98  KSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASH 157
           K ALR  PV  Y  E  L   + +C ICL DF +GE++++LPKCNHGFHVRCID WL  H
Sbjct: 111 KKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 170

Query: 158 SSCPTCRQSLLE 167
            +CP CR  L+E
Sbjct: 171 LTCPKCRNCLVE 182

[Close]

BLAST of HG10018369 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 189/201 (94.03%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 3   MESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALG 62
           MESNHHRPR HRLLLD +TTAAPSNG SRTRNSY+ EANFDTNMVIILAALLCALICALG
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNG-SRTRNSYNNEANFDTNMVIILAALLCALICALG 60

Query: 63  LNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPI 122
           LNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSE+GLEIRETDCPI
Sbjct: 61  LNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPI 120

Query: 123 CLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGNR 182
           CLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGNR
Sbjct: 121 CLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNR 180

Query: 183 PAGNSSASGQGEISITVDEIT 203
           PAGNSSASGQGEISITVDEIT
Sbjct: 181 PAGNSSASGQGEISITVDEIT 200

[Close]

BLAST of HG10018369 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.2e-95
Identity = 183/202 (90.59%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD  T AP +  SRTRNSY+ EANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAGN 180
           ICLGDF AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 203
           R AGNSSASGQGEISITVD IT
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of HG10018369 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.3e-92
Identity = 179/203 (88.18%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHRPRPHRLLLD  TT APSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNG-SRTRNSYTNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCA RCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSESGL IRETDC
Sbjct: 61  LGLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQSASES  A+AG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAG 180

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGNSSASGQGEISI +D+I+
Sbjct: 181 NRPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of HG10018369 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.0e-92
Identity = 179/203 (88.18%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHRPRPHRLLLD  TT APSNG SRTRNSY+ EANFDTNMVIILAALLCALICA
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNG-SRTRNSYTNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSESGL IRETDC
Sbjct: 61  LGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQSASES  A+AG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAG 180

Query: 181 NRPAGNSSASGQGEISITVDEIT 203
           NRPAGN SASGQGEISI +D+I+
Sbjct: 181 NRPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of HG10018369 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.8e-87
Identity = 172/193 (89.12%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MAMESNHHRPRPHRLLLD-ETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICA 60
           MAM S+HHR RPHR LLD + TA PSNG +RTR+SYS EANFDTNMVIILAALLCALICA
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNG-NRTRSSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDC 120
           LGLNSIVRCALRCSRRFAFET GGT++RL ATGLKKSALRQIPVAVYGSESGLEIRETDC
Sbjct: 61  LGLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDC 120

Query: 121 PICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAAAEAG 180
           PICLGDF AGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESA AEAG
Sbjct: 121 PICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAG 180

Query: 181 NRPAGNSSASGQG 193
           NRPAGNSSA GQG
Sbjct: 181 NRPAGNSSAGGQG 192

[Close]

BLAST of HG10018369 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-45
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 14  RLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+    AP+N + + +   + +  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANAPANANPKPKGGIN-DTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 133
           RRF  +     AS           ATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 134 FTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of HG10018369 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 9.7e-43
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 39  ANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSAL 98
           A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF         +   A G+KK AL
Sbjct: 35  ASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRAL 94

Query: 99  RQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASHSSCP 158
           + IPV  Y  E  L+++ T+C ICLGDF  GE ++VLPKCNHGFHV+CIDTWL SHSSCP
Sbjct: 95  KVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCP 154

Query: 159 TCRQSLLEQQSASESA 175
           TCRQSLLE Q+ +  +
Sbjct: 155 TCRQSLLEHQTPANGS 168

[Close]

BLAST of HG10018369 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 4.1e-41
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 13  HRLLLDETTAAPSNGSSRTRNSYSTEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL+          S   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKI 132
               +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of HG10018369 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 35  YSTEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGT-ASRLTATGL 94
           Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E GG     RLT TG+
Sbjct: 46  YVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGV 105

Query: 95  KKSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLAS 154
           K+ AL+      Y +E  L   +T+C ICL +F A E++K+LP C+HGFHVRCID WL+S
Sbjct: 106 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 165

Query: 155 HSSCPTCRQSLLE 167
           HSSCPTCR  L++
Sbjct: 166 HSSCPTCRHCLIQ 178

[Close]

BLAST of HG10018369 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-31
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 38  EANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GLK 97
           E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+K
Sbjct: 51  ENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIK 110

Query: 98  KSALRQIPVAVYGSESGLEIRETDCPICLGDFTAGEKIKVLPKCNHGFHVRCIDTWLASH 157
           K ALR  PV  Y  E  L   + +C ICL DF +GE++++LPKCNHGFHVRCID WL  H
Sbjct: 111 KKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 170

Query: 158 SSCPTCRQSLLE 167
            +CP CR  L+E
Sbjct: 171 LTCPKCRNCLVE 182

The following BLAST results are available for this feature:

BLAST of HG10018369 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052006.1	6.4e-97	94.03	RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 fing...	[more]
KAG7016045.1	1.6e-92	88.67	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023550807.1	1.6e-92	88.67	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
XP_022938777.1	4.7e-92	88.18	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]
KAG6578482.1	6.2e-92	88.18	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10018369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	1.7e-44	58.90	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.4e-41	61.76	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	5.7e-40	54.55	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	2.0e-37	54.89	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	7.0e-30	47.73	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of HG10018369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXT6	3.1e-97	94.03	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KAH2	2.2e-95	90.59	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A6J1FF16	2.3e-92	88.18	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	3.0e-92	88.18	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A6J1BZW4	3.8e-87	89.12	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of HG10018369 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	1.2e-45	58.90	RING/U-box superfamily protein	[more]
AT5G05280.1	9.7e-43	61.76	RING/U-box superfamily protein	[more]
AT5G01880.1	4.1e-41	54.55	RING/U-box superfamily protein	[more]
AT1G49230.1	1.4e-38	54.89	RING/U-box superfamily protein	[more]
AT1G49220.1	5.0e-31	47.73	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 5.4E-8 score: 42.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 6.1E-14 score: 52.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.282736
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..166 e-value: 4.8E-23 score: 82.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 13..196
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 13..196
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 118..161 e-value: 1.95596E-17 score: 70.4085
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018369.1	HG10018369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane