HG10018367 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018367
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 3512644 .. 3513548 (-)
RNA-Seq ExpressionHG10018367
SyntenyHG10018367
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGTGATTTGGCCTTCGTATTCGTCTTCTTCCTTTTGATTATCTTCTCTCCTGGATCCGATGCTTCTTTCCATGACCGTATTTGGAATCTTCATCTCCGGTTCGCGCTTTTGAAGGGTTCCCCTCAGGTTCGTTTCCTTCGGATTCTTGATTTTTTATGCAACTTTTGGATTGCGGTTGACTTTTAAATTTATATTTCGCCCTTTCGCTTTTTAGAGCGTAGCTCCAGCTCCTTGTCCGAGCTCTGTTATCAATGATAAATTGAGTGGGGGCGCCCCAAAAAGTTCTCCAACTCCCGCAATTCCGCCGATTCCCAGTTCAATTGATGGTTTTACTACAGAGAAGTGTGACTCGTCATACAAGACTTGCCATGACCTTAAGAATATGACTGCTTGCCTTCTGTTCGCAGAACAAGGTAATTGCGTTTTTTCTTCCTTTATGCTTGAGATGTTTTCTTCTGGGAGTAATTTAAGCTTGTGATTTTGCGAGGACTGTACCTCTTTTTAATATAGAAATGAACACTCTTCCCATGATGCTCTCTGCTTATTTGTTACTGAAGTTGGTTTTTCATTGCGGATTTCTACTTGCTATATATCCTTTTGTTGTATTTCCAAAATGGTTAAATGCATCTCCATCGACCAACTTATTATGTAGTTATTTTGCTGATATTAGTGCCCCTTACTCTTAGTAACCCTGCCAATTTCTAGACGCTGCTATCAATGCACAGTACGTTGATTCAGTAGCGGGTTTTGTAGAAGAGAGGATGTTATTTATGGAGAATCTGCTGGTTGGAATTAGTCAATCTCTCGACACCATGCTACAATCCTTTCACTTACTGGATGTCAGTGTCTGTGGTGGCAGAGGAGAGGACAGCCACCTTCTCTTCCCCTACGCAAACTGA

mRNA sequence

ATGAATCGTGATTTGGCCTTCGTATTCGTCTTCTTCCTTTTGATTATCTTCTCTCCTGGATCCGATGCTTCTTTCCATGACCGTATTTGGAATCTTCATCTCCGGTTCGCGCTTTTGAAGGGTTCCCCTCAGAGCGTAGCTCCAGCTCCTTGTCCGAGCTCTGTTATCAATGATAAATTGAGTGGGGGCGCCCCAAAAAGTTCTCCAACTCCCGCAATTCCGCCGATTCCCAGTTCAATTGATGGTTTTACTACAGAGAAGTGTGACTCGTCATACAAGACTTGCCATGACCTTAAGAATATGACTGCTTGCCTTCTGTTCGCAGAACAAGACGCTGCTATCAATGCACAGTACGTTGATTCAGTAGCGGGTTTTGTAGAAGAGAGGATGTTATTTATGGAGAATCTGCTGGTTGGAATTAGTCAATCTCTCGACACCATGCTACAATCCTTTCACTTACTGGATGTCAGTGTCTGTGGTGGCAGAGGAGAGGACAGCCACCTTCTCTTCCCCTACGCAAACTGA

Coding sequence (CDS)

ATGAATCGTGATTTGGCCTTCGTATTCGTCTTCTTCCTTTTGATTATCTTCTCTCCTGGATCCGATGCTTCTTTCCATGACCGTATTTGGAATCTTCATCTCCGGTTCGCGCTTTTGAAGGGTTCCCCTCAGAGCGTAGCTCCAGCTCCTTGTCCGAGCTCTGTTATCAATGATAAATTGAGTGGGGGCGCCCCAAAAAGTTCTCCAACTCCCGCAATTCCGCCGATTCCCAGTTCAATTGATGGTTTTACTACAGAGAAGTGTGACTCGTCATACAAGACTTGCCATGACCTTAAGAATATGACTGCTTGCCTTCTGTTCGCAGAACAAGACGCTGCTATCAATGCACAGTACGTTGATTCAGTAGCGGGTTTTGTAGAAGAGAGGATGTTATTTATGGAGAATCTGCTGGTTGGAATTAGTCAATCTCTCGACACCATGCTACAATCCTTTCACTTACTGGATGTCAGTGTCTGTGGTGGCAGAGGAGAGGACAGCCACCTTCTCTTCCCCTACGCAAACTGA

Protein sequence

MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKLSGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQYVDSVAGFVEERMLFMENLLVGISQSLDTMLQSFHLLDVSVCGGRGEDSHLLFPYAN
Homology
BLAST of HG10018367 vs. NCBI nr
Match: XP_038886197.1 (uncharacterized protein LOC120076442 [Benincasa hispida])

HSP 1 Score: 179.1 bits (453), Expect = 3.3e-41
Identity = 94/120 (78.33%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDA-SFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDK 60
           MNRDLA VF+FFL I+ SPGSDA SF  RIWNLH RFAL K  PQSVAPAP PSSVIN K
Sbjct: 1   MNRDLALVFIFFLFILLSPGSDASSFPYRIWNLHRRFALSKDPPQSVAPAPGPSSVINGK 60

Query: 61  LSGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQYV 120
           LS GAPKSSPTP IPP PSS DGFTTEKCDSS KTCHDLKNMTACLL AEQ  A+  QY+
Sbjct: 61  LSRGAPKSSPTPVIPPFPSSTDGFTTEKCDSSSKTCHDLKNMTACLLLAEQ--AVMEQYL 118

BLAST of HG10018367 vs. NCBI nr
Match: XP_004138551.1 (uncharacterized protein LOC101213740 isoform X1 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-38
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDL F+F+FFL I+ SPGSDASF +R WNLHLRFA+ K S QSVAP P P+SV+N KL
Sbjct: 1   MNRDLIFLFLFFLFILLSPGSDASFPNRFWNLHLRFAVSKDSLQSVAPTPGPNSVVNGKL 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQ 111
           S GAP +SPTPAIPP P S DGFTTEKCDSSYKTCHDLK++ ACLL AEQ
Sbjct: 61  SRGAPTNSPTPAIPPFPKSTDGFTTEKCDSSYKTCHDLKDLIACLLSAEQ 110

BLAST of HG10018367 vs. NCBI nr
Match: KAG6578483.1 (hypothetical protein SDJN03_22931, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-38
Identity = 87/119 (73.11%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDL  VFVFF+LI+ SPGSDAS  DRIWNLHLRF+L K SP+ +APAP PSSVIN KL
Sbjct: 295 MNRDLVLVFVFFVLILVSPGSDASLSDRIWNLHLRFSLSKDSPERIAPAPGPSSVINGKL 354

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQYV 120
            GG P SSPTPAIPP PSS DGFT EKCD + KTCHDLK MTACL FAEQ  A+  QY+
Sbjct: 355 IGGVPISSPTPAIPPFPSSTDGFTLEKCDRN-KTCHDLKKMTACLQFAEQ--AMVEQYL 410

BLAST of HG10018367 vs. NCBI nr
Match: XP_022938773.1 (uncharacterized protein LOC111444889 [Cucurbita moschata] >KAG7016047.1 hypothetical protein SDJN02_21151 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-38
Identity = 87/119 (73.11%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDL  VFVFF+LI+ SPGSDAS  DRIWNLHLRF+L K SP+ +APAP PSSVIN KL
Sbjct: 1   MNRDLVLVFVFFVLILVSPGSDASLSDRIWNLHLRFSLSKDSPERIAPAPGPSSVINGKL 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQYV 120
            GG P SSPTPAIPP PSS DGFT EKCD + KTCHDLK MTACL FAEQ  A+  QY+
Sbjct: 61  IGGVPISSPTPAIPPFPSSTDGFTLEKCDRN-KTCHDLKKMTACLQFAEQ--AMVEQYL 116

BLAST of HG10018367 vs. NCBI nr
Match: XP_023549795.1 (uncharacterized protein LOC111808188 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-37
Identity = 86/119 (72.27%), Postives = 94/119 (78.99%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRD   V VFF+LI+ SPGSDAS  DRIWNLHLRF+LLK SP+ +APAP PSSVIN KL
Sbjct: 1   MNRDFVLVIVFFVLILVSPGSDASLTDRIWNLHLRFSLLKDSPERIAPAPGPSSVINGKL 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQYV 120
            GG P SSPTPAIPP PSS DGFT EKCD + KTCHDLK MTACL FAEQ  A+  QY+
Sbjct: 61  IGGVPISSPTPAIPPFPSSTDGFTLEKCDRN-KTCHDLKKMTACLQFAEQ--AMVEQYL 116

BLAST of HG10018367 vs. ExPASy TrEMBL
Match: A0A6J1FJV4 (uncharacterized protein LOC111444889 OS=Cucurbita moschata OX=3662 GN=LOC111444889 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 87/119 (73.11%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDL  VFVFF+LI+ SPGSDAS  DRIWNLHLRF+L K SP+ +APAP PSSVIN KL
Sbjct: 1   MNRDLVLVFVFFVLILVSPGSDASLSDRIWNLHLRFSLSKDSPERIAPAPGPSSVINGKL 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQYV 120
            GG P SSPTPAIPP PSS DGFT EKCD + KTCHDLK MTACL FAEQ  A+  QY+
Sbjct: 61  IGGVPISSPTPAIPPFPSSTDGFTLEKCDRN-KTCHDLKKMTACLQFAEQ--AMVEQYL 116

BLAST of HG10018367 vs. ExPASy TrEMBL
Match: A0A1S3C4Q3 (uncharacterized protein LOC103496622 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496622 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 8.2e-38
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDLAF+F+F LLI+FSPGSDASF +  WNLHLRFA+ K S QSVAP P P+SV+N KL
Sbjct: 1   MNRDLAFLFLFSLLILFSPGSDASFPNHFWNLHLRFAVSKDSLQSVAPTPGPNSVVNGKL 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQ 111
           S GA  SS TPAIPP P+S DGFTTEKCDSSYKTCHDLK+++ACLL AEQ
Sbjct: 61  SRGATTSSATPAIPPSPNSTDGFTTEKCDSSYKTCHDLKDLSACLLSAEQ 110

BLAST of HG10018367 vs. ExPASy TrEMBL
Match: A0A6J1JUX9 (uncharacterized protein LOC111489115 OS=Cucurbita maxima OX=3661 GN=LOC111489115 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 9.0e-37
Identity = 82/110 (74.55%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDL  VFVFF+LI+ SPGS AS  DRIWNL LRF+L K SP+ +APAP PSSVIN KL
Sbjct: 1   MNRDLVLVFVFFVLILVSPGSGASLSDRIWNLRLRFSLSKDSPERIAPAPGPSSVINGKL 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQ 111
            GG P SSPTPAIPP PSS DGFT+EKCD + KTCHDLK MTACL FAEQ
Sbjct: 61  IGGVPISSPTPAIPPFPSSTDGFTSEKCDRN-KTCHDLKKMTACLQFAEQ 109

BLAST of HG10018367 vs. ExPASy TrEMBL
Match: A0A6J1HET4 (uncharacterized protein LOC111463332 OS=Cucurbita moschata OX=3662 GN=LOC111463332 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 9.7e-31
Identity = 73/110 (66.36%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPAPCPSSVINDKL 60
           MNRDLA VFVFF+L + S GS+ASF DRIWNLHLRFAL K SPQS+APAP P+       
Sbjct: 1   MNRDLALVFVFFVLNLASRGSNASFSDRIWNLHLRFALSKDSPQSIAPAPAPAP------ 60

Query: 61  SGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQ 111
             G    SPTPAIPP PSS DG + +KC  SY TCHDL+NMTACLLFAE+
Sbjct: 61  --GPSSVSPTPAIPPFPSSTDGSSMKKCSPSYNTCHDLENMTACLLFAEK 102

BLAST of HG10018367 vs. ExPASy TrEMBL
Match: A0A6J1C206 (uncharacterized protein LOC111006692 OS=Momordica charantia OX=3673 GN=LOC111006692 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.1e-29
Identity = 80/121 (66.12%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 1   MNRDLAFVFVFFLLIIFSPGSDASFHDRIWNLHLRFALLKGSPQSVAPA--PCPSSVIND 60
           MN  L  +F FFLLI    GSDASF D     H RFAL + SPQS APA  P PSSV N 
Sbjct: 1   MNPHLPLLFAFFLLI---RGSDASFPDD----HFRFALSEVSPQSKAPAPGPGPSSVTNR 60

Query: 61  KLSGGAPKSSPTPAIPPIPSSIDGFTTEKCDSSYKTCHDLKNMTACLLFAEQDAAINAQY 120
           K SGGAPKSSPTPAIPP  S +DGFTTEKC+SSY TCHDL+NMTACLLFAE   A+  QY
Sbjct: 61  KFSGGAPKSSPTPAIPPFTSLVDGFTTEKCNSSYNTCHDLENMTACLLFAEH--AVVEQY 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886197.13.3e-4178.33uncharacterized protein LOC120076442 [Benincasa hispida][more]
XP_004138551.11.2e-3874.55uncharacterized protein LOC101213740 isoform X1 [Cucumis sativus][more]
KAG6578483.14.4e-3873.11hypothetical protein SDJN03_22931, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022938773.14.4e-3873.11uncharacterized protein LOC111444889 [Cucurbita moschata] >KAG7016047.1 hypothet... [more]
XP_023549795.11.7e-3772.27uncharacterized protein LOC111808188 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FJV42.2e-3873.11uncharacterized protein LOC111444889 OS=Cucurbita moschata OX=3662 GN=LOC1114448... [more]
A0A1S3C4Q38.2e-3874.55uncharacterized protein LOC103496622 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1JUX99.0e-3774.55uncharacterized protein LOC111489115 OS=Cucurbita maxima OX=3661 GN=LOC111489115... [more]
A0A6J1HET49.7e-3166.36uncharacterized protein LOC111463332 OS=Cucurbita moschata OX=3662 GN=LOC1114633... [more]
A0A6J1C2063.1e-2966.12uncharacterized protein LOC111006692 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018367.1HG10018367.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane