HG10018358 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018358
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 3450992 .. 3451339 (+)
RNA-Seq ExpressionHG10018358
SyntenyHG10018358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATTGCTCTCGCCCACCATTGCTCTCGCTCACTCTGCTCTCGCCCACCATTGCTGTCACTTTTGCTCTCGCTCTTTCTCACTCTCGCTCACCGGAGTGA

mRNA sequence

ATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATTGCTCTCGCCCACCATTGCTCTCGCTCACTCTGCTCTCGCCCACCATTGCTGTCACTTTTGCTCTCGCTCTTTCTCACTCTCGCTCACCGGAGTGA

Coding sequence (CDS)

ATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATGGCTCTCGCTCACTTTCACCACCATTGCTCTCGCCCACCATTGCTCTCGCTCACTCTGCTCTCGCCCACCATTGCTGTCACTTTTGCTCTCGCTCTTTCTCACTCTCGCTCACCGGAGTGA

Protein sequence

MALAHFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTFTTMALAHFHHHCSRPPLLSLTLLSPTIAVTFALALSHSRSPE
Homology
BLAST of HG10018358 vs. NCBI nr
Match: GIL79169.1 (hypothetical protein Vretifemale_8542, partial [Volvox reticuliferus])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 41/102 (40.20%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 5   HFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTF-TTMALAHFHHHGSRS 64
           H HHH S S  PP  S+  TT    H HHH    L PP +  T  TT    H HHH   S
Sbjct: 102 HHHHHPSSSPPPPPPSIITTT---THHHHHHHHHLPPPSIITTITTTTTFHHHHHHHPSS 161

Query: 65  LSPPWLSLTFTTMALAHFHHHCSRPPLLSLTLLSPTIAVTFA 106
            SPP + +  TT    H HH  S PP  S+ + + T    FA
Sbjct: 162 SSPPPIIIITTTHHHHHHHHPSSSPPPPSIIITTTTTTTPFA 200

BLAST of HG10018358 vs. NCBI nr
Match: GIL79166.1 (hypothetical protein Vretifemale_8542, partial [Volvox reticuliferus])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 41/102 (40.20%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 5   HFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTF-TTMALAHFHHHGSRS 64
           H HHH S S  PP  S+  TT    H HHH    L PP +  T  TT    H HHH   S
Sbjct: 73  HHHHHPSSSPPPPPPSIITTT---THHHHHHHHHLPPPSIITTITTTTTFHHHHHHHPSS 132

Query: 65  LSPPWLSLTFTTMALAHFHHHCSRPPLLSLTLLSPTIAVTFA 106
            SPP + +  TT    H HH  S PP  S+ + + T    FA
Sbjct: 133 SSPPPIIIITTTHHHHHHHHPSSSPPPPSIIITTTTTTTPFA 171

BLAST of HG10018358 vs. NCBI nr
Match: GIL79168.1 (hypothetical protein Vretifemale_8542, partial [Volvox reticuliferus])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 41/102 (40.20%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 5   HFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTF-TTMALAHFHHHGSRS 64
           H HHH S S  PP  S+  TT    H HHH    L PP +  T  TT    H HHH   S
Sbjct: 69  HHHHHPSSSPPPPPPSIITTT---THHHHHHHHHLPPPSIITTITTTTTFHHHHHHHPSS 128

Query: 65  LSPPWLSLTFTTMALAHFHHHCSRPPLLSLTLLSPTIAVTFA 106
            SPP + +  TT    H HH  S PP  S+ + + T    FA
Sbjct: 129 SSPPPIIIITTTHHHHHHHHPSSSPPPPSIIITTTTTTTPFA 167

BLAST of HG10018358 vs. NCBI nr
Match: GFR60643.1 (hypothetical protein ElyMa_005412600 [Elysia marginata])

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-06
Identity = 30/71 (42.25%), Postives = 34/71 (47.89%), Query Frame = 0

Query: 7   HHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSP 66
           HHH     + PWL   + TMA    HHHG R  + PWL   + TMA    HHHG    S 
Sbjct: 56  HHHHYTVSTSPWLQSQYITMATLAVHHHGYRVSTSPWLQSQYITMATLAVHHHGYTGSSS 115

Query: 67  P-----WLSLT 73
           P     WLS T
Sbjct: 116 PSLHTFWLSST 126

BLAST of HG10018358 vs. NCBI nr
Match: CAB1311697.1 (unnamed protein product [Coregonus sp. 'balchen'])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-05
Identity = 46/118 (38.98%), Postives = 58/118 (49.15%), Query Frame = 0

Query: 11   SRSLSPPWLSLTFTTMALAHFH----HHG--SRSLSPPWLSLTFTTMALAHFHHHG---- 70
            S++L+  WLS T     LA FH    ++G  S SL+ PWLS T     LA FH       
Sbjct: 2556 SQNLNQTWLSFTEPQPTLAVFHRASTNYGCLSLSLNQPWLSFTEPQPTLAVFHSTSTNPG 2615

Query: 71   --SRSLSPPWLSLTFTTMALAHFHHHCSRPPLLSLTLLSPTIAVTF---ALALSHSRS 114
              S+ L+ PWLS T     LA FH   + P  LSL+L  P ++ T     LAL H  S
Sbjct: 2616 CLSQHLNQPWLSFTEPQPTLAVFHRASTNPGCLSLSLNQPWLSFTEPQPTLALFHRAS 2673

BLAST of HG10018358 vs. ExPASy TrEMBL
Match: A0A6F8ZL86 (Uncharacterized protein OS=Coregonus sp. 'balchen' OX=861768 GN=CSTEINMANNI_LOCUS40 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 46/118 (38.98%), Postives = 58/118 (49.15%), Query Frame = 0

Query: 11   SRSLSPPWLSLTFTTMALAHFH----HHG--SRSLSPPWLSLTFTTMALAHFHHHG---- 70
            S++L+  WLS T     LA FH    ++G  S SL+ PWLS T     LA FH       
Sbjct: 2556 SQNLNQTWLSFTEPQPTLAVFHRASTNYGCLSLSLNQPWLSFTEPQPTLAVFHSTSTNPG 2615

Query: 71   --SRSLSPPWLSLTFTTMALAHFHHHCSRPPLLSLTLLSPTIAVTF---ALALSHSRS 114
              S+ L+ PWLS T     LA FH   + P  LSL+L  P ++ T     LAL H  S
Sbjct: 2616 CLSQHLNQPWLSFTEPQPTLAVFHRASTNPGCLSLSLNQPWLSFTEPQPTLALFHRAS 2673

BLAST of HG10018358 vs. ExPASy TrEMBL
Match: A0A3R7QB40 (Uncharacterized protein OS=Penaeus vannamei OX=6689 GN=C7M84_019890 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 1    MALAHFHHHGSRSLSPPWLSLTFTTMALAHFHHHGSRSLSPPWLSLTFTTMALAHFHHHG 60
            + ++ F HH    LSPP  S +F+T+ ++ F HH    L P   S +F+T+ ++ F HH 
Sbjct: 956  IVISVFLHHRHLRLSPPSSSPSFSTIVISVFLHHRHLRLFPS-ASPSFSTIVISVFLHHL 1015

Query: 61   SRSLSPPWLSLTFTTMALAHFHHH 85
               LSPP  S +F+T+ ++ F HH
Sbjct: 1016 HFRLSPPSSSPSFSTIVISVFLHH 1038

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GIL79169.12.4e-0840.20hypothetical protein Vretifemale_8542, partial [Volvox reticuliferus][more]
GIL79166.12.4e-0840.20hypothetical protein Vretifemale_8542, partial [Volvox reticuliferus][more]
GIL79168.12.4e-0840.20hypothetical protein Vretifemale_8542, partial [Volvox reticuliferus][more]
GFR60643.18.6e-0642.25hypothetical protein ElyMa_005412600 [Elysia marginata][more]
CAB1311697.15.6e-0538.98unnamed protein product [Coregonus sp. 'balchen'][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6F8ZL862.7e-0538.98Uncharacterized protein OS=Coregonus sp. 'balchen' OX=861768 GN=CSTEINMANNI_LOCU... [more]
A0A3R7QB403.0e-0436.90Uncharacterized protein OS=Penaeus vannamei OX=6689 GN=C7M84_019890 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018358.1HG10018358.1mRNA