HG10018351 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018351
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L10-like
Location	Chr04: 3386073 .. 3387186 (+)
RNA-Seq Expression	HG10018351
Synteny	HG10018351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGTTCGCTGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCACCCTTTCCATGTTCTGCGAATTAATAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTTGGCAAACCACAAGGAACCTGTGCAAGAGTTGCCATTGGTCAGGTTCTTCTTTCTGTTCGGTGCAAGGATAGTAACAGCCAACATGCACAGGAGGCCCTCCGTCGTGCTAAGTTCAAATTCCCTGGTCGCCAGAAGATCATTGTTAGCAGGAAGTGGTATGCCTTAAGAGATCTTTGCTTTTTTTTTTTTTTTTTTTTTTAGTTTCTTCTTGTTCAGCTAAATGCGCTTGTGGGTCAAATGTGTTGTTTTAGTGCCTCTGTTTCTTGTGGAGTAATTAAATCTTAAATGTTACTCATGCTAGTCTTATTGATTGAATGATGAATGCTTCAAATTTCCTTTTCAGGGGATTCACTAAATTCAGTCGGGCTGATTATCTGGCTTACAAGGCAGAGAACAAAATTCTTCCAGATGGTGTAAACGCCAAGGTAAGCTATATTACATTCAGCCACATACTTTGCCTTCCTGTTATTATAAACTGTTCAAACGTCTTGGATTTTTTCCATTTTGTAAGCACAAGAATGGATGTAGGGTTAGCTATGACAACGAGATATGCTACTTCTCTCTTTCTATTATATGAATTCAGACTCATTAAAAAGCAACCGAAGAGTATTGATATTCCTTGGATGCATGCTATAAAAAGGTTGTTTGGTTCGGATGGTGGGTCGTAGGTCATGTTTCCCGGAGCATTTCTCGAAATCTGTTGGTCTAATTGCATGCATCCTTTTGTAGTTACGGTCTTTCTTCTCTTATATCTTAGTGGGTTAGGACCCTGCTCTTCTGTAATCATTTCACATCTACACTGTTTTACGAATTGTTTCATGGTTAATTTGCTTATTTGTTTCGTGTACTTGAAGTTGCTCTATCTTATTACTTCCTATTTGGTAACTGATGGGGTCACAACTGAACTTTTCAGCTTCTTGGATGCCATGGACCTTTAGCAAATCGTCAACCTGGAAGAGCATTTCTACCTCAAACTGCCTAA

mRNA sequence

ATGGCTAAGTTCGCTGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCACCCTTTCCATGTTCTGCGAATTAATAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTTGGCAAACCACAAGGAACCTGTGCAAGAGTTGCCATTGGTCAGGTTCTTCTTTCTGTTCGGTGCAAGGATAGTAACAGCCAACATGCACAGGAGGCCCTCCGTCGTGCTAAGTTCAAATTCCCTGGTCGCCAGAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGTCGGGCTGATTATCTGGCTTACAAGGCAGAGAACAAAATTCTTCCAGATGGTGTAAACGCCAAGCTTCTTGGATGCCATGGACCTTTAGCAAATCGTCAACCTGGAAGAGCATTTCTACCTCAAACTGCCTAA

Coding sequence (CDS)

ATGGCTAAGTTCGCTGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCACCCTTTCCATGTTCTGCGAATTAATAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTTGGCAAACCACAAGGAACCTGTGCAAGAGTTGCCATTGGTCAGGTTCTTCTTTCTGTTCGGTGCAAGGATAGTAACAGCCAACATGCACAGGAGGCCCTCCGTCGTGCTAAGTTCAAATTCCCTGGTCGCCAGAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGTCGGGCTGATTATCTGGCTTACAAGGCAGAGAACAAAATTCTTCCAGATGGTGTAAACGCCAAGCTTCTTGGATGCCATGGACCTTTAGCAAATCGTCAACCTGGAAGAGCATTTCTACCTCAAACTGCCTAA

Protein sequence

MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLPQTA

Homology

[Close]

BLAST of HG10018351 vs. NCBI nr
Match: XP_008459481.1 (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 4.8e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 101 MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 160

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV
Sbjct: 161 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 220

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 221 NAKLLGCHGPLANRQPGRAFLPQTA 245

[Close]

BLAST of HG10018351 vs. NCBI nr
Match: XP_038891235.1 (60S ribosomal protein L10-like [Benincasa hispida])

HSP 1 Score: 299.3 bits (765), Expect = 1.8e-77
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQ A
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQAA 220

[Close]

BLAST of HG10018351 vs. NCBI nr
Match: XP_022142890.1 (60S ribosomal protein L10-like [Momordica charantia] >XP_022142891.1 60S ribosomal protein L10-like [Momordica charantia])

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-77
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL YKAENKILPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLNYKAENKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10018351 vs. NCBI nr
Match: XP_022148973.1 (60S ribosomal protein L10-like [Momordica charantia])

HSP 1 Score: 298.1 bits (762), Expect = 4.0e-77
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL+YK+ENKI+PDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLSYKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10018351 vs. NCBI nr
Match: KAG6578494.1 (60S ribosomal protein L10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.7 bits (761), Expect = 5.3e-77
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKA+NKILPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKADNKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLP+TA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPETA 220

[Close]

BLAST of HG10018351 vs. ExPASy Swiss-Prot
Match: Q9SPB3 (60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVL
Sbjct: 76  MTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKD NS HAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY+ +K++N+ILPDGV
Sbjct: 136 LSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           NAKLLGCHGPLANRQPG+AF+
Sbjct: 196 NAKLLGCHGPLANRQPGKAFI 216

[Close]

BLAST of HG10018351 vs. ExPASy Swiss-Prot
Match: P93847 (60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-71
Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVL
Sbjct: 76  MTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKD NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL YK+EN+I+PDGV
Sbjct: 136 LSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           NAKLLG HGPLA RQPGRAFL
Sbjct: 196 NAKLLGNHGPLAARQPGRAFL 216

[Close]

BLAST of HG10018351 vs. ExPASy Swiss-Prot
Match: Q9M5M7 (60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.8e-70
Identity = 127/145 (87.59%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVL
Sbjct: 76  MTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKD+NS +AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY   K+EN+ILPDGV
Sbjct: 136 LSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHG LANR+PGRAF+   A
Sbjct: 196 NAKLLGCHGRLANRKPGRAFIDAVA 220

[Close]

BLAST of HG10018351 vs. ExPASy Swiss-Prot
Match: Q40592 (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-69
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 5   AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR 64
           AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVR
Sbjct: 9   AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVR 68

Query: 65  CKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKL 124
           CKD N+ HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL YK+EN+I+PDGVNAKL
Sbjct: 69  CKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKL 128

Query: 125 LGCHGPLANRQPGRAFL 142
           LGCHG LA RQPGRAFL
Sbjct: 129 LGCHGRLAARQPGRAFL 145

[Close]

BLAST of HG10018351 vs. ExPASy Swiss-Prot
Match: O22431 (60S ribosomal protein L10 OS=Pinus taeda OX=3352 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.0e-67
Identity = 119/141 (84.40%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M KFAGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVR +D++S HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL +K EN+I+PDGV
Sbjct: 136 LSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           N KLLGC GPL+NR+PG+AFL
Sbjct: 196 NPKLLGCRGPLSNRKPGQAFL 216

[Close]

BLAST of HG10018351 vs. ExPASy TrEMBL
Match: A0A1S3CAD5 (60S ribosomal protein L10-like OS=Cucumis melo OX=3656 GN=LOC103498603 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.3e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 101 MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 160

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV
Sbjct: 161 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 220

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 221 NAKLLGCHGPLANRQPGRAFLPQTA 245

[Close]

BLAST of HG10018351 vs. ExPASy TrEMBL
Match: A0A6J1CM71 (60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111012895 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.1e-77
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL YKAENKILPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLNYKAENKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10018351 vs. ExPASy TrEMBL
Match: A0A6J1D5K0 (60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111017508 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL+YK+ENKI+PDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLSYKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10018351 vs. ExPASy TrEMBL
Match: A0A5A7TFE6 (60S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00450 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.7e-77
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10018351 vs. ExPASy TrEMBL
Match: A0A6J1FEG0 (60S ribosomal protein L10-like OS=Cucurbita moschata OX=3662 GN=LOC111444980 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.7e-77
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKDSNSQH+QEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKA+NKILPDGV
Sbjct: 136 LSVRCKDSNSQHSQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKADNKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLP TA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPDTA 220

[Close]

BLAST of HG10018351 vs. TAIR 10
Match: AT1G14320.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-68
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVL
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+   + E +++PDGV
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLP 143
           NAK L CHGPLANRQPG AFLP
Sbjct: 196 NAKFLSCHGPLANRQPGSAFLP 217

[Close]

BLAST of HG10018351 vs. TAIR 10
Match: AT1G26910.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-67
Identity = 120/141 (85.11%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVL
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY   + E +I+PDGV
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           NAK L CHGPLANRQPG AFL
Sbjct: 196 NAKFLSCHGPLANRQPGSAFL 216

[Close]

BLAST of HG10018351 vs. TAIR 10
Match: AT1G66580.1 (senescence associated gene 24 )

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-65
Identity = 118/145 (81.38%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVL
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 120
           LSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y   +A  +I+PDGV
Sbjct: 136 LSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAK L  HGPLANRQPG AF+  T+
Sbjct: 196 NAKFLSNHGPLANRQPGSAFISATS 220

[Close]

BLAST of HG10018351 vs. TAIR 10
Match: AT1G14320.2 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 52  ARVAIGQ--VLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAY 111
           AR+A  +  VLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+   
Sbjct: 68  ARIACNKYMVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKL 127

Query: 112 KAENKILPDGVNAKLLGCHGPLANRQPGRAFLP 143
           + E +++PDGVNAK L CHGPLANRQPG AFLP
Sbjct: 128 RQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLP 160

The following BLAST results are available for this feature:

BLAST of HG10018351 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459481.1	4.8e-78	100.00	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]
XP_038891235.1	1.8e-77	99.31	60S ribosomal protein L10-like [Benincasa hispida]	[more]
XP_022142890.1	2.4e-77	99.31	60S ribosomal protein L10-like [Momordica charantia] >XP_022142891.1 60S ribosom...	[more]
XP_022148973.1	4.0e-77	97.93	60S ribosomal protein L10-like [Momordica charantia]	[more]
KAG6578494.1	5.3e-77	97.93	60S ribosomal protein L10, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10018351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SPB3	1.2e-71	88.65	60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1	[more]
P93847	5.9e-71	91.49	60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1	[more]
Q9M5M7	3.8e-70	87.59	60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1	[more]
Q40592	4.2e-69	91.24	60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 ...	[more]
O22431	3.0e-67	84.40	60S ribosomal protein L10 OS=Pinus taeda OX=3352 GN=RPL10 PE=2 SV=1	[more]

BLAST of HG10018351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAD5	2.3e-78	100.00	60S ribosomal protein L10-like OS=Cucumis melo OX=3656 GN=LOC103498603 PE=3 SV=1	[more]
A0A6J1CM71	1.1e-77	99.31	60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111012895 PE...	[more]
A0A6J1D5K0	2.0e-77	97.93	60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111017508 PE...	[more]
A0A5A7TFE6	9.7e-77	97.24	60S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1FEG0	9.7e-77	97.24	60S ribosomal protein L10-like OS=Cucurbita moschata OX=3662 GN=LOC111444980 PE=...	[more]

BLAST of HG10018351 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14320.1	6.2e-68	83.80	Ribosomal protein L16p/L10e family protein	[more]
AT1G26910.1	1.1e-67	85.11	Ribosomal protein L16p/L10e family protein	[more]
AT1G66580.1	1.0e-65	81.38	senescence associated gene 24	[more]
AT1G14320.2	1.1e-35	74.19	Ribosomal protein L16p/L10e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.60.300		coord: 104..139 e-value: 4.1E-15 score: 56.9
None	No IPR available	PANTHER	PTHR11726:SF42	60S RIBOSOMAL PROTEIN L10-LIKE	coord: 1..142
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 4..91 e-value: 1.6E-20 score: 73.5
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 1..91 e-value: 1.37742E-30 score: 104.496
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..103 e-value: 1.0E-59 score: 202.7
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..101
IPR001197	Ribosomal protein L10e	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 1..142
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 33..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018351.1	HG10018351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome