HG10018332 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018332
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mental retardation GTPase activating protein
Location	Chr04: 3149810 .. 3151170 (-)
RNA-Seq Expression	HG10018332
Synteny	HG10018332

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGCTTTAGGGAAGATGGCAGATCCTTTAGATCAAACATAACCATCTCCAGCACTGCTTCTTCCCCAGGCTACTCCATGAGAGGTACTTAAAAAAAATACCTCTCTGTTTTCTGCTTCAAGTCAGTTTTTCCTGTCATGGGTTTCTCTCATCTCATCGTTTATTTCTTGATTTCTTTTGCAGATGAAATTGACCCATCAACCTATTCTTTCACTACTGCTCTCAAAGGTAAGACATTTTTGCAAACACCCTAAGGAACCACTCGGTTTTTAACCTTGGTTTCAGCTGAGAAAAGCAAATAAGAAAATGGAGTTGTCTTTCAATAGTAAAGTGGGTAGTGGGTTTTTGTGCAGCATTGCAAGCCAGGTCAAGTTATAATAGCTGGGAAAGCTTGTCACCAGAGGGATTTGTTTTGAACTCAAAGTGGTATGAAGCAGAGAAATATATTTGCAATCCTCTTTCAGGGGAGGTTCCAATGGAGTTTTTATCTGCTAAAACACTAAATGCAAGGTCATTCAGAAATTTTAGAACCAGAATCACCATGTCTGCTCCTTTAGTTTATTCCACAAATTCCAGACAACTCCAAGATAGGCCAATTAATTTTCCACAGGAGGAAGCAGTTCATCAGTATCCAATTCCAGGTACCATCACTTTTCTTTTTCCACTCATTTTCTTATAACAAGATTTGCAAGGTTTCTTTGAAGTTGAATTCAATATCAAACAAGTTCATTGTTTGAGTTGTAGAAAAGAGAGTGGAAGGGATGACGACCAAGGATGTGGGAACTCAAAGCACACCACCTGACAGAAGTTCAACAAGTCCTAGCCCTGCTTCGACACCTCCCATTAACGAGAGATCGTTAAAGGCATGTGGGAAAGAACAAACTGGTTCACCAAATTCTTATTCCATTCCTAAAAAGAAACCAGAGAAAGCGGTATGTACATTCTATGATCTTTCGAGTGATAATAATGATTTAAGTAGAAGGAAGATTCAAAGGGGTTTGAAATGACAAGATTAACACAAACCCAACTAATTAAGAAATCTAGGAAGAAATTTTAGGCTGATTAACCCATTCCCCGAAACATGAGAGTGCAAACAGTCATAATTTGGATGGTTCAGTCTCTTCCTCGTTGATTGTGCATTTCTACAAATGGGGCCGTCAAGATTAGGCTTGACTGATTCAGATCAATTATCTAACAAAATGGAGAAGTGTAAGAGTAAAAATGGGACCACGCTCTTCACATATTCCTATAGGCTATAGCTTACAGACCTATGATTTTCTCCCATGGTTGTCTGCTTCCCAACAACTCATACAGTTGTGGTTGTCTCTGTTTGTGGGAAGCATTTTCCGGACAGTAG

mRNA sequence

ATGCGAAGCTTTAGGGAAGATGGCAGATCCTTTAGATCAAACATAACCATCTCCAGCACTGCTTCTTCCCCAGGCTACTCCATGAGAGATGAAATTGACCCATCAACCTATTCTTTCACTACTGCTCTCAAAGAAAAGAGAGTGGAAGGGATGACGACCAAGGATGTGGGAACTCAAAGCACACCACCTGACAGAAGTTCAACAAGTCCTAGCCCTGCTTCGACACCTCCCATTAACGAGAGATCGTTAAAGGCATGTGGGAAAGAACAAACTGGTTCACCAAATTCTTATTCCATTCCTAAAAAGAAACCAGAGAAAGCGGCTATAGCTTACAGACCTATGATTTTCTCCCATGGTTGTCTGCTTCCCAACAACTCATACAGTTGTGGTTGTCTCTGTTTGTGGGAAGCATTTTCCGGACAGTAG

Coding sequence (CDS)

ATGCGAAGCTTTAGGGAAGATGGCAGATCCTTTAGATCAAACATAACCATCTCCAGCACTGCTTCTTCCCCAGGCTACTCCATGAGAGATGAAATTGACCCATCAACCTATTCTTTCACTACTGCTCTCAAAGAAAAGAGAGTGGAAGGGATGACGACCAAGGATGTGGGAACTCAAAGCACACCACCTGACAGAAGTTCAACAAGTCCTAGCCCTGCTTCGACACCTCCCATTAACGAGAGATCGTTAAAGGCATGTGGGAAAGAACAAACTGGTTCACCAAATTCTTATTCCATTCCTAAAAAGAAACCAGAGAAAGCGGCTATAGCTTACAGACCTATGATTTTCTCCCATGGTTGTCTGCTTCCCAACAACTCATACAGTTGTGGTTGTCTCTGTTTGTGGGAAGCATTTTCCGGACAGTAG

Protein sequence

MRSFREDGRSFRSNITISSTASSPGYSMRDEIDPSTYSFTTALKEKRVEGMTTKDVGTQSTPPDRSSTSPSPASTPPINERSLKACGKEQTGSPNSYSIPKKKPEKAAIAYRPMIFSHGCLLPNNSYSCGCLCLWEAFSGQ

Homology

[Close]

BLAST of HG10018332 vs. NCBI nr
Match: XP_038889564.1 (uncharacterized protein LOC120079450 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 2.3e-32
Identity = 102/204 (50.00%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK--------------- 60
           +RSFREDGRSFRSNITISSTASSPG YSMRDEIDPSTYSFTTALK               
Sbjct: 43  IRSFREDGRSFRSNITISSTASSPGCYSMRDEIDPSTYSFTTALKALQARTSYNSWESLS 102

Query: 61  ------------------------------------------------------------ 108
                                                                       
Sbjct: 103 PEGFALNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSR 162

[Close]

BLAST of HG10018332 vs. NCBI nr
Match: XP_008459461.1 (PREDICTED: uncharacterized protein LOC103498590 isoform X2 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-29
Identity = 96/203 (47.29%), Postives = 101/203 (49.75%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK--------------- 60
           +RSFREDGRSFRSN+TISSTASSPG YSMRDEIDPSTYSFTTALK               
Sbjct: 43  IRSFREDGRSFRSNLTISSTASSPGCYSMRDEIDPSTYSFTTALKALQARSSYNSWESLS 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 PEGFALNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSR 162

[Close]

BLAST of HG10018332 vs. NCBI nr
Match: XP_004141499.1 (uncharacterized protein LOC101213588 isoform X1 [Cucumis sativus] >KGN52573.1 hypothetical protein Csa_008692 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-28
Identity = 95/203 (46.80%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK--------------- 60
           +RSF EDGRSFRSN+TISSTASSPG YSMRDEIDPSTYSFTTALK               
Sbjct: 43  IRSFGEDGRSFRSNLTISSTASSPGCYSMRDEIDPSTYSFTTALKALQARSSYNSWESLS 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 PEGFALNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSR 162

[Close]

BLAST of HG10018332 vs. NCBI nr
Match: XP_031741937.1 (uncharacterized protein LOC101213588 isoform X2 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-28
Identity = 95/203 (46.80%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK--------------- 60
           +RSF EDGRSFRSN+TISSTASSPG YSMRDEIDPSTYSFTTALK               
Sbjct: 43  IRSFGEDGRSFRSNLTISSTASSPGCYSMRDEIDPSTYSFTTALKALQARSSYNSWESLS 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 PEGFALNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSR 162

[Close]

BLAST of HG10018332 vs. NCBI nr
Match: XP_022939095.1 (uncharacterized protein LOC111445097 isoform X2 [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 4.4e-28
Identity = 97/197 (49.24%), Postives = 101/197 (51.27%), Query Frame = 0


Query: 1   MRSFR-EDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK-------------- 60
           +RSFR EDGRSFRSNITISSTASSPG YSMRDEIDPSTYSFTTALK              
Sbjct: 43  LRSFREEDGRSFRSNITISSTASSPGYYSMRDEIDPSTYSFTTALKALQSRSNYNSWESL 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 SPPEGLALNSKWYEAEKYICNPLSGEVPMECLSAKSLSARSFRNSRTRITMSAPLVYSTN 162

[Close]

BLAST of HG10018332 vs. ExPASy TrEMBL
Match: A0A1S3CBG4 (uncharacterized protein LOC103498590 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498590 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 96/203 (47.29%), Postives = 101/203 (49.75%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK--------------- 60
           +RSFREDGRSFRSN+TISSTASSPG YSMRDEIDPSTYSFTTALK               
Sbjct: 43  IRSFREDGRSFRSNLTISSTASSPGCYSMRDEIDPSTYSFTTALKALQARSSYNSWESLS 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 PEGFALNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSR 162

[Close]

BLAST of HG10018332 vs. ExPASy TrEMBL
Match: A0A0A0KSN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644010 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 95/203 (46.80%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK--------------- 60
           +RSF EDGRSFRSN+TISSTASSPG YSMRDEIDPSTYSFTTALK               
Sbjct: 43  IRSFGEDGRSFRSNLTISSTASSPGCYSMRDEIDPSTYSFTTALKALQARSSYNSWESLS 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 PEGFALNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSR 162

[Close]

BLAST of HG10018332 vs. ExPASy TrEMBL
Match: A0A6J1FLP3 (uncharacterized protein LOC111445097 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445097 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 97/197 (49.24%), Postives = 101/197 (51.27%), Query Frame = 0


Query: 1   MRSFR-EDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK-------------- 60
           +RSFR EDGRSFRSNITISSTASSPG YSMRDEIDPSTYSFTTALK              
Sbjct: 43  LRSFREEDGRSFRSNITISSTASSPGYYSMRDEIDPSTYSFTTALKALQSRSNYNSWESL 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 SPPEGLALNSKWYEAEKYICNPLSGEVPMECLSAKSLSARSFRNSRTRITMSAPLVYSTN 162

[Close]

BLAST of HG10018332 vs. ExPASy TrEMBL
Match: A0A6J1C127 (uncharacterized protein LOC111006452 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006452 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 94/208 (45.19%), Postives = 100/208 (48.08%), Query Frame = 0


Query: 1   MRSFREDGRSFRSNITISSTASSPGYSMRDEIDPSTYSFTTALK---------------- 60
           +RSFREDGRSFRSNITISSTASSPGYSMR+EIDPSTYSFT ALK                
Sbjct: 45  IRSFREDGRSFRSNITISSTASSPGYSMREEIDPSTYSFTAALKALQARSSYNSWESLSP 104

Query: 61  ------------------------------------------------------------ 113
                                                                       
Sbjct: 105 DGFSLNSKWYEAEKYICNPLSGEVPMECLSAKTLSARSFRNFRTRITMSAPLVYSTNSRL 164

[Close]

BLAST of HG10018332 vs. ExPASy TrEMBL
Match: A0A6J1FG35 (uncharacterized protein LOC111445097 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445097 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 97/199 (48.74%), Postives = 101/199 (50.75%), Query Frame = 0


Query: 1   MRSFR-EDGRSFRSNITISSTASSPG-YSMRDEIDPSTYSFTTALK-------------- 60
           +RSFR EDGRSFRSNITISSTASSPG YSMRDEIDPSTYSFTTALK              
Sbjct: 43  LRSFREEDGRSFRSNITISSTASSPGYYSMRDEIDPSTYSFTTALKALQSRSNYNSWESL 102

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 103 SPPEGLALNSKWYEAEKYICNPLSGEVPMECLSAKSLSARSFRNSRTRITMSAPLVYSTN 162

[Close]

BLAST of HG10018332 vs. TAIR 10
Match: AT3G02500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits to 49 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MRSFREDGRSFRSNITISSTASSPGYSMRDEIDPSTYSFTTALKEKRVEGMTTKD 56
          +RSFRED +S  +N+TISSTASSPGYS++DEIDPS YSF++ALK  + + +  K+
Sbjct: 36 IRSFREDHKSCTTNVTISSTASSPGYSLKDEIDPSNYSFSSALKALQAKSVYKKN 90

[Close]

BLAST of HG10018332 vs. TAIR 10
Match: AT5G16030.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 3  SFREDGR--SFRSN--ITISSTASSPGYSMRDEIDPSTYSFTTALKEKRVEGM 52
          SFRED    SFR+     ISSTASSPGY++++EIDPSTYSFT ALK  + + M
Sbjct: 39 SFREDHHKSSFRTTNFNNISSTASSPGYTLKEEIDPSTYSFTNALKALQAKTM 91

[Close]

BLAST of HG10018332 vs. TAIR 10
Match: AT5G16030.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 3  SFREDGR--SFRSN--ITISSTASSPGYSMRDEIDPSTYSFTTALKEKRVEGM 52
          SFRED    SFR+     ISSTASSPGY++++EIDPSTYSFT ALK  + + M
Sbjct: 39 SFREDHHKSSFRTTNFNNISSTASSPGYTLKEEIDPSTYSFTNALKALQAKTM 91

[Close]

BLAST of HG10018332 vs. TAIR 10
Match: AT5G16030.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 33116 Blast hits to 13831 proteins in 816 species: Archae - 63; Bacteria - 1163; Metazoa - 13507; Fungi - 3213; Plants - 1270; Viruses - 1083; Other Eukaryotes - 12817 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 3  SFREDGR--SFRSN--ITISSTASSPGYSMRDEIDPSTYSFTTALK 45
          SFRED    SFR+     ISSTASSPGY++++EIDPSTYSFT ALK
Sbjct: 39 SFREDHHKSSFRTTNFNNISSTASSPGYTLKEEIDPSTYSFTNALK 84

HSP 2 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 42  ALKEKRVEGMTTKDVGTQSTPP-DRSSTSPSPASTPPINERSLK 85
           AL EK+V GM  +DVG QST   D SS SPSPA TPPI ERSLK
Sbjct: 189 ALAEKKVVGM-KRDVGIQSTTSVDLSSGSPSPAKTPPIMERSLK 231

The following BLAST results are available for this feature:

BLAST of HG10018332 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889564.1	2.3e-32	50.00	uncharacterized protein LOC120079450 [Benincasa hispida]	[more]
XP_008459461.1	2.3e-29	47.29	PREDICTED: uncharacterized protein LOC103498590 isoform X2 [Cucumis melo]	[more]
XP_004141499.1	3.4e-28	46.80	uncharacterized protein LOC101213588 isoform X1 [Cucumis sativus] >KGN52573.1 hy...	[more]
XP_031741937.1	3.4e-28	46.80	uncharacterized protein LOC101213588 isoform X2 [Cucumis sativus]	[more]
XP_022939095.1	4.4e-28	49.24	uncharacterized protein LOC111445097 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10018332 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018332 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBG4	1.1e-29	47.29	uncharacterized protein LOC103498590 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KSN4	1.6e-28	46.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644010 PE=4 SV=1	[more]
A0A6J1FLP3	2.1e-28	49.24	uncharacterized protein LOC111445097 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1C127	3.6e-28	45.19	uncharacterized protein LOC111006452 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FG35	3.6e-28	48.74	uncharacterized protein LOC111445097 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of HG10018332 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02500.1	1.4e-11	60.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G16030.1	1.2e-07	60.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G16030.3	1.2e-07	60.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G16030.2	2.1e-07	67.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	PANTHER	PTHR36748:SF3	MENTAL RETARDATION GTPASE ACTIVATING PROTEIN	coord: 1..44 coord: 45..102
None	No IPR available	PANTHER	PTHR36748	MENTAL RETARDATION GTPASE ACTIVATING PROTEIN	coord: 1..44
None	No IPR available	PANTHER	PTHR36748	MENTAL RETARDATION GTPASE ACTIVATING PROTEIN	coord: 45..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018332.1	HG10018332.1	mRNA