HG10018232 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018232
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 2047368 .. 2047958 (+)
RNA-Seq Expression	HG10018232
Synteny	HG10018232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACAGGGTATATGTTTCGTCAGTGGCATTAAAATGTGAATGGATTTTGAATTATGCAAAGGATTTCAGTGTGATTACGACATATTATAATTGCTCTTCTTTGGAGTGCTCCCCGCCTTCTGTTTTGGGAGGGGCAAAGTTGAATATTATTCACGTGGATGCGGCTTGTAGTGTTGGTTTGCCTCTGGTTGGGTTTGAGTGTGTGATGGGATCATCTTCTGGCTCTATTCTTGCTTCTCTTTTCGGTTGTAAAGAGATAGGGCTTATTCCTATTTGTGTTGAGGCTTTGGTTGTATTTGAAAATCTTCAGTTAGCAGATCGAATGGACCTCCAACGTCTACTTGTTCTGTCTGATTCATTAGCGGTAGATGTAGTAAACTTGATTGCTGACATAAAGAAGTTGGTTGCTTCTTTTTCATTGGTGATTTTTCAACATGTGTCTCGTTCTCATAATTCTGCGGCTCATTCGCTGGCTAGGTTGGGATTTACGGGATTGAATGGTTTGATTCTTGAGGGTGCTCCTGCAGGGGTATCTCAGTTGTATCTTAATGATTTCTCTATTGTGAGTGACCGATTGGTCTTGTAG

mRNA sequence

ATGAATAACAGGGTATATGTTTCGTCAGTGGCATTAAAATGTGAATGGATTTTGAATTATGCAAAGGATTTCAGTGTGATTACGACATATTATAATTGCTCTTCTTTGGAGTGCTCCCCGCCTTCTGTTTTGGGAGGGGCAAAGTTGAATATTATTCACGTGGATGCGGCTTGTAGTGTTGGTTTGCCTCTGGTTGGGTTTGAGTGTGTGATGGGATCATCTTCTGGCTCTATTCTTGCTTCTCTTTTCGGTTGTAAAGAGATAGGGCTTATTCCTATTTGTGTTGAGGCTTTGGTTGTATTTGAAAATCTTCAGTTAGCAGATCGAATGGACCTCCAACGTCTACTTGTTCTGTCTGATTCATTAGCGGTAGATGTAGTAAACTTGATTGCTGACATAAAGAAGTTGGTTGCTTCTTTTTCATTGGTGATTTTTCAACATGTGTCTCGTTCTCATAATTCTGCGGCTCATTCGCTGGCTAGGTTGGGATTTACGGGATTGAATGGTTTGATTCTTGAGGGTGCTCCTGCAGGGGTATCTCAGTTGTATCTTAATGATTTCTCTATTGTGAGTGACCGATTGGTCTTGTAG

Coding sequence (CDS)

ATGAATAACAGGGTATATGTTTCGTCAGTGGCATTAAAATGTGAATGGATTTTGAATTATGCAAAGGATTTCAGTGTGATTACGACATATTATAATTGCTCTTCTTTGGAGTGCTCCCCGCCTTCTGTTTTGGGAGGGGCAAAGTTGAATATTATTCACGTGGATGCGGCTTGTAGTGTTGGTTTGCCTCTGGTTGGGTTTGAGTGTGTGATGGGATCATCTTCTGGCTCTATTCTTGCTTCTCTTTTCGGTTGTAAAGAGATAGGGCTTATTCCTATTTGTGTTGAGGCTTTGGTTGTATTTGAAAATCTTCAGTTAGCAGATCGAATGGACCTCCAACGTCTACTTGTTCTGTCTGATTCATTAGCGGTAGATGTAGTAAACTTGATTGCTGACATAAAGAAGTTGGTTGCTTCTTTTTCATTGGTGATTTTTCAACATGTGTCTCGTTCTCATAATTCTGCGGCTCATTCGCTGGCTAGGTTGGGATTTACGGGATTGAATGGTTTGATTCTTGAGGGTGCTCCTGCAGGGGTATCTCAGTTGTATCTTAATGATTTCTCTATTGTGAGTGACCGATTGGTCTTGTAG

Protein sequence

MNNRVYVSSVALKCEWILNYAKDFSVITTYYNCSSLECSPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEALVVFENLQLADRMDLQRLLVLSDSLAVDVVNLIADIKKLVASFSLVIFQHVSRSHNSAAHSLARLGFTGLNGLILEGAPAGVSQLYLNDFSIVSDRLVL

Homology

[Close]

BLAST of HG10018232 vs. NCBI nr
Match: XP_042988698.1 (uncharacterized protein LOC122316231 [Carya illinoinensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-06
Identity = 55/163 (33.74%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 39  SPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEAL 98
           SPPS  G  KLN   VD A S    + G   ++  S G ++ S    +   +I + VEAL
Sbjct: 558 SPPS--GVFKLN---VDGAFSSNGSVAGTGAIVRDSKGEVIMSATKKEVSIMIVVEVEAL 617

Query: 99  VVFENLQLADRMDLQRLLVLSDSLAV------------DVVNLIADIKKLVASFSLVIFQ 158
            +   LQ    + +  L++ SDSL V               N+I + K+L+  F +   Q
Sbjct: 618 AILRGLQFCIHLGIHNLIIESDSLLVVREFNMQGSSKATFGNVIREAKELMTRFGICEVQ 677

Query: 159 HVSRSHNSAAHSLARLGFTGLNGLILEGA-PAGVSQLYLNDFS 189
           HVSRS+N AAHSLA+ G +  N  +  GA P+ +S +  +D S
Sbjct: 678 HVSRSYNKAAHSLAKFGLSVQNINLWWGAYPSVISNILWSDSS 715

[Close]

BLAST of HG10018232 vs. NCBI nr
Match: XP_042974660.1 (uncharacterized protein LOC122306292 [Carya illinoinensis])

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-05
Identity = 52/149 (34.90%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 39  SPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEAL 98
           SPPS  G  KLN   VD A S    + G   ++ +S G ++ S    +   +  + VEAL
Sbjct: 44  SPPS--GVFKLN---VDGAFSSNGSVSGIGVIVRNSKGEVIMSAAKKELSVMTAVEVEAL 103

Query: 99  VVFENLQLADRMDLQRLLVLSDSLAV------------DVVNLIADIKKLVASFSLVIFQ 158
            +   LQL   +++Q L++ SDSL V               N+I + K+LV  F     Q
Sbjct: 104 AIIRGLQLCIDLEIQNLVIESDSLLVVKEFNKQGSSKATFGNVIREAKELVTRFGTCEVQ 163

Query: 159 HVSRSHNSAAHSLARLGFTGLNGLILEGA 176
           HV+RS N AAHSLA+ G +  N  +  GA
Sbjct: 164 HVNRSCNEAAHSLAKFGLSVQNISLWWGA 187

The following BLAST results are available for this feature:

BLAST of HG10018232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042988698.1	3.0e-06	33.74	uncharacterized protein LOC122316231 [Carya illinoinensis]	[more]
XP_042974660.1	7.3e-05	34.90	uncharacterized protein LOC122306292 [Carya illinoinensis]	[more]

BLAST of HG10018232 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018232 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018232 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 127..162 e-value: 2.7E-5 score: 23.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 50..165 e-value: 1.9E-5 score: 26.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018232.1	HG10018232.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity